Wall clock time and date at job start Tue Mar 31 2020 06:24:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47062 * 2 1 4 4 C 1.50696 * 109.47383 * 119.99852 * 2 1 3 5 5 C 1.38238 * 119.99728 * 120.00184 * 4 2 1 6 6 C 1.38235 * 120.00108 * 180.02562 * 5 4 2 7 7 C 1.38243 * 119.99617 * 0.02562 * 6 5 4 8 8 C 1.50706 * 119.99586 * 179.97438 * 7 6 5 9 9 C 1.53000 * 109.47116 * 89.99867 * 8 7 6 10 10 N 1.46496 * 109.47378 * 179.97438 * 9 8 7 11 11 C 1.34776 * 120.00347 * 179.97438 * 10 9 8 12 12 O 1.21281 * 119.99879 * 0.02562 * 11 10 9 13 13 C 1.50696 * 120.00079 * 180.02562 * 11 10 9 14 14 C 1.53000 * 109.47110 * 180.02562 * 13 11 10 15 15 C 1.50696 * 109.47114 * 180.02562 * 14 13 11 16 16 H 1.08002 * 120.00473 * 359.97438 * 15 14 13 17 17 C 1.37882 * 120.00200 * 180.02562 * 15 14 13 18 18 N 1.31514 * 120.00390 * 180.02562 * 17 15 14 19 19 Si 1.86802 * 119.99826 * 359.97438 * 17 15 14 20 20 H 1.48498 * 109.47331 * 89.99980 * 19 17 15 21 21 H 1.48498 * 109.47145 * 210.00274 * 19 17 15 22 22 H 1.48499 * 109.46942 * 330.00531 * 19 17 15 23 23 C 1.38233 * 120.00248 * 0.25361 * 7 6 5 24 24 C 1.38234 * 120.00209 * 300.02591 * 4 2 1 25 25 H 1.09001 * 109.46954 * 299.99809 * 1 2 3 26 26 H 1.09001 * 109.47412 * 59.99879 * 1 2 3 27 27 H 1.09003 * 109.46938 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46954 * 240.00191 * 2 1 3 29 29 H 1.09001 * 109.47105 * 300.00308 * 3 2 1 30 30 H 1.09001 * 109.47080 * 60.00267 * 3 2 1 31 31 H 1.09001 * 109.47293 * 180.02562 * 3 2 1 32 32 H 1.08000 * 120.00578 * 359.97438 * 5 4 2 33 33 H 1.07999 * 120.00165 * 179.97438 * 6 5 4 34 34 H 1.09000 * 109.46646 * 209.99280 * 8 7 6 35 35 H 1.09000 * 109.47248 * 329.99998 * 8 7 6 36 36 H 1.09000 * 109.47214 * 300.00167 * 9 8 7 37 37 H 1.09008 * 109.47142 * 59.99333 * 9 8 7 38 38 H 0.97001 * 119.99484 * 0.02562 * 10 9 8 39 39 H 1.09000 * 109.47543 * 300.00434 * 13 11 10 40 40 H 1.09000 * 109.46926 * 60.00402 * 13 11 10 41 41 H 1.09005 * 109.47322 * 299.99831 * 14 13 11 42 42 H 1.08991 * 109.47114 * 60.00075 * 14 13 11 43 43 H 0.96995 * 119.99923 * 179.97438 * 18 17 15 44 44 H 1.08004 * 119.99934 * 179.72684 * 23 7 6 45 45 H 1.07999 * 120.00005 * 359.97438 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 1.2304 5 6 2.8272 -1.8342 1.1035 6 6 3.2876 -2.4862 2.2321 7 6 2.9528 -2.0145 3.4877 8 6 3.4543 -2.7257 4.7182 9 6 4.8018 -2.1336 5.1358 10 7 5.2891 -2.8244 6.3322 11 6 6.4666 -2.4688 6.8832 12 8 7.1226 -1.5766 6.3887 13 6 6.9681 -3.1799 8.1136 14 6 8.3155 -2.5877 8.5313 15 6 8.8173 -3.2992 9.7613 16 1 8.2334 -4.0940 10.2014 17 6 10.0215 -2.9348 10.3255 18 7 10.4596 -3.5560 11.3987 19 14 11.0313 -1.5597 9.5647 20 1 10.6379 -0.2626 10.1715 21 1 12.4736 -1.8069 9.8169 22 1 10.7849 -1.5162 8.1010 23 6 2.1532 -0.8940 3.6146 24 6 1.6980 -0.2384 2.4860 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1300 1.4425 -0.0005 32 1 3.0878 -2.2035 0.1226 33 1 3.9082 -3.3645 2.1330 34 1 2.7358 -2.6006 5.5283 35 1 3.5755 -3.7868 4.5005 36 1 5.5203 -2.2585 4.3257 37 1 4.6807 -1.0723 5.3534 38 1 4.7646 -3.5382 6.7274 39 1 6.2497 -3.0547 8.9238 40 1 7.0890 -4.2411 7.8960 41 1 9.0342 -2.7126 7.7212 42 1 8.1943 -1.5266 8.7489 43 1 11.3069 -3.2999 11.7953 44 1 1.8881 -0.5282 4.5956 45 1 1.0771 0.6397 2.5851 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000514766045.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:47 Heat of formation + Delta-G solvation = -50.210292 kcal Electronic energy + Delta-G solvation = -21467.200695 eV Core-core repulsion = 18255.012026 eV Total energy + Delta-G solvation = -3212.188669 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.05142 -39.18084 -36.50773 -34.79920 -33.45179 -32.05896 -31.21972 -31.10936 -28.32131 -27.53475 -26.05062 -23.91762 -23.05927 -21.86063 -21.14987 -20.23419 -19.59595 -17.22525 -16.69880 -16.12525 -15.82105 -15.77127 -15.25208 -15.17015 -14.41844 -14.10290 -13.97950 -13.95299 -13.93893 -13.48712 -13.26236 -12.84947 -12.58879 -12.53322 -12.49807 -12.19458 -11.91773 -11.73261 -11.46137 -11.39618 -11.32428 -11.00318 -10.95185 -10.92093 -10.14268 -10.02477 -9.76622 -9.23821 -9.16056 -9.15329 -8.84888 -8.75499 -8.49033 -6.01539 -4.00114 1.05587 1.16793 3.15987 3.37571 3.39428 3.45834 3.57319 3.58649 4.28725 4.39656 4.52597 4.64876 4.68284 4.76020 4.79913 4.90612 4.96554 5.04695 5.19503 5.22554 5.28583 5.33996 5.35687 5.43055 5.48156 5.48522 5.57890 5.71509 5.78285 5.81240 5.83991 5.89051 5.95937 6.10947 6.12448 6.18334 6.37184 6.38838 6.63736 6.72131 6.76224 7.38908 7.45890 7.78129 7.82813 8.51934 8.68919 9.01639 9.61658 11.11250 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.035961 B = 0.002196 C = 0.002127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.424293 B =12745.186401 C =13159.257841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.058 4.058 3 C -0.145 4.145 4 C -0.081 4.081 5 C -0.117 4.117 6 C -0.111 4.111 7 C -0.082 4.082 8 C -0.091 4.091 9 C 0.125 3.875 10 N -0.744 5.744 11 C 0.509 3.491 12 O -0.541 6.541 13 C -0.122 4.122 14 C 0.001 3.999 15 C -0.525 4.525 16 H 0.073 0.927 17 C 0.068 3.932 18 N -0.904 5.904 19 Si 0.877 3.123 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.261 1.261 23 C -0.111 4.111 24 C -0.113 4.113 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.076 0.924 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.120 0.880 33 H 0.122 0.878 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.399 0.601 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.023 0.977 42 H 0.019 0.981 43 H 0.263 0.737 44 H 0.122 0.878 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.086 4.315 -23.104 32.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.076 4.076 3 C -0.202 4.202 4 C -0.081 4.081 5 C -0.135 4.135 6 C -0.129 4.129 7 C -0.083 4.083 8 C -0.129 4.129 9 C 0.001 3.999 10 N -0.398 5.398 11 C 0.297 3.703 12 O -0.417 6.417 13 C -0.162 4.162 14 C -0.037 4.037 15 C -0.563 4.563 16 H 0.091 0.909 17 C -0.133 4.133 18 N -0.543 5.543 19 Si 0.704 3.296 20 H -0.202 1.202 21 H -0.215 1.215 22 H -0.185 1.185 23 C -0.129 4.129 24 C -0.131 4.131 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.095 0.905 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.138 0.862 33 H 0.140 0.860 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.232 0.768 39 H 0.104 0.896 40 H 0.104 0.896 41 H 0.042 0.958 42 H 0.037 0.963 43 H 0.073 0.927 44 H 0.140 0.860 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -22.442 4.973 -23.339 32.758 hybrid contribution 0.323 0.316 -0.082 0.459 sum -22.119 5.289 -23.421 32.646 Atomic orbital electron populations 1.21858 0.94344 1.01984 1.01927 1.20133 0.95934 0.96125 0.95401 1.21865 1.01412 0.95033 1.01923 1.19859 0.97809 0.95736 0.94659 1.21038 0.98235 0.95671 0.98538 1.21063 0.99747 1.00144 0.91910 1.19687 0.98000 0.96232 0.94389 1.20794 0.96677 0.99868 0.95565 1.21210 0.93872 0.96840 0.87960 1.46181 1.23243 1.40104 1.30251 1.21541 0.79625 0.83260 0.85833 1.90655 1.56468 1.31069 1.63501 1.21667 1.01063 1.00393 0.93094 1.19369 0.90998 0.96388 0.96937 1.21122 1.05521 1.19678 1.09939 0.90930 1.24977 0.97402 0.96333 0.94571 1.69911 1.21245 1.41908 1.21204 0.86794 0.79103 0.82644 0.81010 1.20245 1.21450 1.18527 1.21064 0.97823 0.95277 0.98726 1.20939 1.00420 0.99884 0.91893 0.92431 0.92415 0.92557 0.90547 0.92409 0.92404 0.92418 0.86197 0.85961 0.90262 0.90262 0.91739 0.91743 0.76757 0.89629 0.89598 0.95838 0.96287 0.92738 0.85980 0.86211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.81 9.01 37.16 0.33 -0.47 16 2 C -0.06 -0.37 3.09 -91.78 -0.28 -0.66 16 3 C -0.15 -0.90 9.01 37.16 0.33 -0.56 16 4 C -0.08 -0.66 4.78 -104.63 -0.50 -1.16 16 5 C -0.12 -0.99 9.67 -39.58 -0.38 -1.38 16 6 C -0.11 -1.00 9.70 -39.58 -0.38 -1.38 16 7 C -0.08 -0.76 5.13 -104.62 -0.54 -1.30 16 8 C -0.09 -0.79 5.46 -27.88 -0.15 -0.94 16 9 C 0.13 1.51 5.66 -4.04 -0.02 1.49 16 10 N -0.74 -9.92 5.56 -60.30 -0.33 -10.25 16 11 C 0.51 9.43 7.83 -10.99 -0.09 9.35 16 12 O -0.54 -12.35 15.98 5.56 0.09 -12.26 16 13 C -0.12 -2.39 5.64 -27.89 -0.16 -2.55 16 14 C 0.00 0.03 3.33 -27.88 -0.09 -0.07 16 15 C -0.52 -15.17 9.66 -34.44 -0.33 -15.50 16 16 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 17 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 18 N -0.90 -28.20 13.96 55.43 0.77 -27.43 16 19 Si 0.88 22.85 27.47 -169.99 -4.67 18.18 16 20 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 21 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 22 H -0.26 -6.79 6.54 56.52 0.37 -6.42 16 23 C -0.11 -1.00 9.70 -39.58 -0.38 -1.38 16 24 C -0.11 -0.96 8.71 -39.58 -0.34 -1.30 16 25 H 0.06 0.32 7.39 -51.93 -0.38 -0.06 16 26 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.08 0.46 7.88 -51.93 -0.41 0.05 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.36 7.39 -51.93 -0.38 -0.03 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.12 0.82 7.95 -52.49 -0.42 0.40 16 33 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 34 H 0.08 0.60 8.08 -51.93 -0.42 0.18 16 35 H 0.08 0.60 8.09 -51.93 -0.42 0.18 16 36 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.06 0.86 8.14 -51.92 -0.42 0.44 16 38 H 0.40 4.01 8.47 -40.82 -0.35 3.67 16 39 H 0.09 1.54 8.14 -51.93 -0.42 1.11 16 40 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 41 H 0.02 0.62 7.16 -51.93 -0.37 0.25 16 42 H 0.02 0.49 7.53 -51.93 -0.39 0.10 16 43 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 44 H 0.12 0.95 8.06 -52.48 -0.42 0.53 16 45 H 0.12 0.83 7.10 -52.49 -0.37 0.46 16 LS Contribution 370.15 15.07 5.58 5.58 Total: -1.00 -34.63 370.15 -9.38 -44.01 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: -7.73 Total: -1.96 kcal Atomic # 6 Polarization: -12.78 SS G_CDS: -3.09 Total: -15.87 kcal Atomic # 7 Polarization: -38.12 SS G_CDS: 0.44 Total: -37.68 kcal Atomic # 8 Polarization: -12.35 SS G_CDS: 0.09 Total: -12.26 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -4.67 Total: 18.18 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.63 -9.38 -44.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000514766045.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.197 kcal (2) G-P(sol) polarization free energy of solvation -34.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds