Wall clock time and date at job start Tue Mar 31 2020 06:24:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47062 * 2 1 4 4 C 1.50696 * 109.47383 * 119.99852 * 2 1 3 5 5 C 1.38238 * 119.99728 * 120.00184 * 4 2 1 6 6 C 1.38235 * 120.00108 * 180.02562 * 5 4 2 7 7 C 1.38243 * 119.99617 * 0.02562 * 6 5 4 8 8 C 1.50706 * 119.99586 * 179.97438 * 7 6 5 9 9 C 1.53000 * 109.47116 * 89.99867 * 8 7 6 10 10 N 1.46496 * 109.47378 * 179.97438 * 9 8 7 11 11 C 1.34776 * 120.00347 * 179.97438 * 10 9 8 12 12 O 1.21281 * 119.99879 * 0.02562 * 11 10 9 13 13 C 1.50696 * 120.00079 * 180.02562 * 11 10 9 14 14 C 1.53000 * 109.47110 * 180.02562 * 13 11 10 15 15 C 1.50696 * 109.47114 * 180.02562 * 14 13 11 16 16 H 1.08002 * 120.00473 * 359.97438 * 15 14 13 17 17 C 1.37882 * 120.00200 * 180.02562 * 15 14 13 18 18 N 1.31514 * 120.00390 * 180.02562 * 17 15 14 19 19 Si 1.86802 * 119.99826 * 359.97438 * 17 15 14 20 20 H 1.48498 * 109.47331 * 89.99980 * 19 17 15 21 21 H 1.48498 * 109.47145 * 210.00274 * 19 17 15 22 22 H 1.48499 * 109.46942 * 330.00531 * 19 17 15 23 23 C 1.38233 * 120.00248 * 0.25361 * 7 6 5 24 24 C 1.38234 * 120.00209 * 300.02591 * 4 2 1 25 25 H 1.09001 * 109.46954 * 299.99809 * 1 2 3 26 26 H 1.09001 * 109.47412 * 59.99879 * 1 2 3 27 27 H 1.09003 * 109.46938 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46954 * 240.00191 * 2 1 3 29 29 H 1.09001 * 109.47105 * 300.00308 * 3 2 1 30 30 H 1.09001 * 109.47080 * 60.00267 * 3 2 1 31 31 H 1.09001 * 109.47293 * 180.02562 * 3 2 1 32 32 H 1.08000 * 120.00578 * 359.97438 * 5 4 2 33 33 H 1.07999 * 120.00165 * 179.97438 * 6 5 4 34 34 H 1.09000 * 109.46646 * 209.99280 * 8 7 6 35 35 H 1.09000 * 109.47248 * 329.99998 * 8 7 6 36 36 H 1.09000 * 109.47214 * 300.00167 * 9 8 7 37 37 H 1.09008 * 109.47142 * 59.99333 * 9 8 7 38 38 H 0.97001 * 119.99484 * 0.02562 * 10 9 8 39 39 H 1.09000 * 109.47543 * 300.00434 * 13 11 10 40 40 H 1.09000 * 109.46926 * 60.00402 * 13 11 10 41 41 H 1.09005 * 109.47322 * 299.99831 * 14 13 11 42 42 H 1.08991 * 109.47114 * 60.00075 * 14 13 11 43 43 H 0.96995 * 119.99923 * 179.97438 * 18 17 15 44 44 H 1.08004 * 119.99934 * 179.72684 * 23 7 6 45 45 H 1.07999 * 120.00005 * 359.97438 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 1.2304 5 6 2.8272 -1.8342 1.1035 6 6 3.2876 -2.4862 2.2321 7 6 2.9528 -2.0145 3.4877 8 6 3.4543 -2.7257 4.7182 9 6 4.8018 -2.1336 5.1358 10 7 5.2891 -2.8244 6.3322 11 6 6.4666 -2.4688 6.8832 12 8 7.1226 -1.5766 6.3887 13 6 6.9681 -3.1799 8.1136 14 6 8.3155 -2.5877 8.5313 15 6 8.8173 -3.2992 9.7613 16 1 8.2334 -4.0940 10.2014 17 6 10.0215 -2.9348 10.3255 18 7 10.4596 -3.5560 11.3987 19 14 11.0313 -1.5597 9.5647 20 1 10.6379 -0.2626 10.1715 21 1 12.4736 -1.8069 9.8169 22 1 10.7849 -1.5162 8.1010 23 6 2.1532 -0.8940 3.6146 24 6 1.6980 -0.2384 2.4860 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1300 1.4425 -0.0005 32 1 3.0878 -2.2035 0.1226 33 1 3.9082 -3.3645 2.1330 34 1 2.7358 -2.6006 5.5283 35 1 3.5755 -3.7868 4.5005 36 1 5.5203 -2.2585 4.3257 37 1 4.6807 -1.0723 5.3534 38 1 4.7646 -3.5382 6.7274 39 1 6.2497 -3.0547 8.9238 40 1 7.0890 -4.2411 7.8960 41 1 9.0342 -2.7126 7.7212 42 1 8.1943 -1.5266 8.7489 43 1 11.3069 -3.2999 11.7953 44 1 1.8881 -0.5282 4.5956 45 1 1.0771 0.6397 2.5851 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000514766045.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:46 Heat of formation + Delta-G solvation = -70.569252 kcal Electronic energy + Delta-G solvation = -21468.083526 eV Core-core repulsion = 18255.012026 eV Total energy + Delta-G solvation = -3213.071500 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.85552 -40.43642 -37.26071 -35.82849 -35.49501 -33.44387 -32.65804 -31.79962 -29.34793 -27.98589 -27.70323 -24.89386 -23.74416 -23.00285 -22.48135 -21.20758 -20.71530 -19.20507 -17.68233 -17.22569 -17.01853 -16.82217 -16.38495 -16.20791 -15.86163 -15.32767 -14.91816 -14.75996 -14.61872 -14.55095 -14.40746 -14.24488 -13.96988 -13.56787 -13.40008 -13.08728 -12.92052 -12.82706 -12.59665 -12.47948 -12.10067 -11.99277 -11.97877 -11.96336 -11.76819 -11.56617 -11.48605 -11.39808 -10.78390 -10.78203 -10.08898 -9.79539 -9.41462 -8.31615 -6.34281 0.40333 0.52323 1.32754 1.34694 1.49996 1.69396 2.26366 2.34847 2.84748 3.03963 3.73680 3.83484 3.93720 4.03747 4.05742 4.14032 4.18293 4.29576 4.32376 4.42212 4.50562 4.53489 4.58690 4.61169 4.63459 4.79956 4.92460 4.96957 4.97395 4.98917 5.05708 5.11962 5.21123 5.23496 5.33328 5.34642 5.37817 5.45052 5.48730 5.56641 5.61509 5.72349 5.77041 6.13637 6.23608 6.61148 6.72155 7.31018 7.32819 8.83915 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.035961 B = 0.002196 C = 0.002127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.424293 B =12745.186401 C =13159.257841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.057 4.057 3 C -0.144 4.144 4 C -0.085 4.085 5 C -0.129 4.129 6 C -0.121 4.121 7 C -0.097 4.097 8 C -0.078 4.078 9 C 0.127 3.873 10 N -0.718 5.718 11 C 0.512 3.488 12 O -0.590 6.590 13 C -0.117 4.117 14 C 0.004 3.996 15 C -0.529 4.529 16 H 0.052 0.948 17 C 0.013 3.987 18 N -0.943 5.943 19 Si 0.938 3.062 20 H -0.269 1.269 21 H -0.277 1.277 22 H -0.263 1.263 23 C -0.122 4.122 24 C -0.123 4.123 25 H 0.056 0.944 26 H 0.068 0.932 27 H 0.052 0.948 28 H 0.081 0.919 29 H 0.069 0.931 30 H 0.056 0.944 31 H 0.047 0.953 32 H 0.133 0.867 33 H 0.131 0.869 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.051 0.949 37 H 0.051 0.949 38 H 0.418 0.582 39 H 0.104 0.896 40 H 0.104 0.896 41 H 0.008 0.992 42 H 0.007 0.993 43 H 0.267 0.733 44 H 0.131 0.869 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.566 4.562 -24.443 34.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.076 4.076 3 C -0.201 4.201 4 C -0.085 4.085 5 C -0.147 4.147 6 C -0.139 4.139 7 C -0.097 4.097 8 C -0.115 4.115 9 C 0.004 3.996 10 N -0.372 5.372 11 C 0.301 3.699 12 O -0.470 6.470 13 C -0.156 4.156 14 C -0.034 4.034 15 C -0.567 4.567 16 H 0.070 0.930 17 C -0.184 4.184 18 N -0.583 5.583 19 Si 0.762 3.238 20 H -0.194 1.194 21 H -0.203 1.203 22 H -0.187 1.187 23 C -0.140 4.140 24 C -0.141 4.141 25 H 0.076 0.924 26 H 0.087 0.913 27 H 0.071 0.929 28 H 0.100 0.900 29 H 0.088 0.912 30 H 0.075 0.925 31 H 0.066 0.934 32 H 0.151 0.849 33 H 0.149 0.851 34 H 0.113 0.887 35 H 0.113 0.887 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.256 0.744 39 H 0.123 0.877 40 H 0.122 0.878 41 H 0.027 0.973 42 H 0.026 0.974 43 H 0.076 0.924 44 H 0.149 0.851 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -23.979 5.185 -24.681 34.800 hybrid contribution 0.700 0.196 0.312 0.791 sum -23.279 5.381 -24.370 34.129 Atomic orbital electron populations 1.21836 0.93590 1.01941 1.02483 1.20173 0.96522 0.96068 0.94811 1.21856 1.00748 0.95021 1.02496 1.20125 0.97419 0.95674 0.95329 1.21294 0.98318 0.95889 0.99161 1.21281 0.99922 1.00623 0.92110 1.19795 0.98592 0.96692 0.94664 1.20695 0.94668 1.00321 0.95825 1.21266 0.95417 0.96315 0.86637 1.45904 1.21520 1.39803 1.29949 1.21242 0.80672 0.82566 0.85466 1.90642 1.58296 1.33265 1.64829 1.21501 0.98561 1.01088 0.94476 1.19231 0.93793 0.95611 0.94809 1.21439 1.05271 1.19101 1.10864 0.92996 1.25801 0.98824 0.98738 0.95085 1.70018 1.22056 1.43615 1.22622 0.85840 0.78057 0.80001 0.79879 1.19373 1.20286 1.18742 1.21284 0.97917 0.95348 0.99416 1.21154 1.00623 1.00322 0.91954 0.92448 0.91307 0.92885 0.90039 0.91197 0.92499 0.93422 0.84897 0.85095 0.88709 0.88727 0.93075 0.93051 0.74430 0.87744 0.87769 0.97310 0.97414 0.92380 0.85097 0.85079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 9.01 71.98 0.65 -0.71 16 2 C -0.06 -0.66 3.09 -11.54 -0.04 -0.70 16 3 C -0.14 -1.60 9.01 71.98 0.65 -0.96 16 4 C -0.09 -1.31 4.78 -19.87 -0.09 -1.41 16 5 C -0.13 -2.05 9.67 22.27 0.22 -1.83 16 6 C -0.12 -2.04 9.70 22.27 0.22 -1.82 16 7 C -0.10 -1.65 5.13 -19.86 -0.10 -1.75 16 8 C -0.08 -1.15 5.46 29.85 0.16 -0.99 16 9 C 0.13 2.88 5.66 86.38 0.49 3.37 16 10 N -0.72 -17.58 5.56 -463.07 -2.57 -20.15 16 11 C 0.51 18.32 7.83 87.66 0.69 19.00 16 12 O -0.59 -26.79 15.98 -3.03 -0.05 -26.84 16 13 C -0.12 -4.39 5.64 29.85 0.17 -4.22 16 14 C 0.00 0.18 3.33 29.85 0.10 0.28 16 15 C -0.53 -30.71 9.66 25.60 0.25 -30.46 16 16 H 0.05 3.15 7.99 -2.91 -0.02 3.13 16 17 C 0.01 0.79 5.47 84.66 0.46 1.26 16 18 N -0.94 -59.27 13.96 21.45 0.30 -58.97 16 19 Si 0.94 47.29 27.47 68.60 1.88 49.18 16 20 H -0.27 -13.11 7.11 99.48 0.71 -12.40 16 21 H -0.28 -13.39 7.11 99.48 0.71 -12.69 16 22 H -0.26 -13.26 6.54 99.48 0.65 -12.61 16 23 C -0.12 -2.03 9.70 22.27 0.22 -1.82 16 24 C -0.12 -1.93 8.71 22.27 0.19 -1.74 16 25 H 0.06 0.55 7.39 -2.39 -0.02 0.53 16 26 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 27 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 28 H 0.08 0.85 7.88 -2.39 -0.02 0.83 16 29 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.06 0.64 7.39 -2.39 -0.02 0.62 16 31 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.13 1.65 7.95 -2.91 -0.02 1.63 16 33 H 0.13 1.86 8.06 -2.91 -0.02 1.84 16 34 H 0.09 1.14 8.08 -2.39 -0.02 1.12 16 35 H 0.09 1.14 8.09 -2.39 -0.02 1.12 16 36 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.05 1.33 8.14 -2.38 -0.02 1.31 16 38 H 0.42 7.07 8.47 -92.71 -0.79 6.28 16 39 H 0.10 3.53 8.14 -2.39 -0.02 3.52 16 40 H 0.10 3.54 8.14 -2.39 -0.02 3.52 16 41 H 0.01 0.45 7.16 -2.38 -0.02 0.44 16 42 H 0.01 0.39 7.53 -2.39 -0.02 0.37 16 43 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 44 H 0.13 1.85 8.06 -2.91 -0.02 1.82 16 45 H 0.13 1.67 7.10 -2.91 -0.02 1.64 16 Total: -1.00 -74.73 370.15 3.90 -70.84 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: 0.11 Total: 10.45 kcal Atomic # 6 Polarization: -28.73 SS G_CDS: 4.22 Total: -24.51 kcal Atomic # 7 Polarization: -76.85 SS G_CDS: -2.27 Total: -79.12 kcal Atomic # 8 Polarization: -26.79 SS G_CDS: -0.05 Total: -26.84 kcal Atomic # 14 Polarization: 47.29 SS G_CDS: 1.88 Total: 49.18 kcal Total: -74.73 3.90 -70.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000514766045.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.268 kcal (2) G-P(sol) polarization free energy of solvation -74.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds