Wall clock time and date at job start Tue Mar 31 2020 06:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50700 * 109.47339 * 2 1 4 4 C 1.38235 * 119.99665 * 269.73192 * 3 2 1 5 5 C 1.38234 * 119.99598 * 179.76424 * 4 3 2 6 6 C 1.38229 * 120.00102 * 0.48154 * 5 4 3 7 7 C 1.50701 * 120.00365 * 179.76796 * 6 5 4 8 8 C 1.50702 * 109.47288 * 270.02576 * 7 6 5 9 9 O 1.21285 * 119.99785 * 357.74346 * 8 7 6 10 10 N 1.34774 * 120.00282 * 177.74810 * 8 7 6 11 11 C 1.46500 * 119.99739 * 5.30636 * 10 8 7 12 12 C 1.50694 * 109.47219 * 90.00629 * 11 10 8 13 13 H 1.07999 * 120.00265 * 359.97438 * 12 11 10 14 14 C 1.37879 * 119.99969 * 180.02562 * 12 11 10 15 15 N 1.31512 * 120.00142 * 359.97438 * 14 12 11 16 16 Si 1.86809 * 119.99931 * 179.97438 * 14 12 11 17 17 H 1.48493 * 109.46890 * 89.99551 * 16 14 12 18 18 H 1.48498 * 109.46920 * 209.99686 * 16 14 12 19 19 H 1.48504 * 109.46793 * 329.99546 * 16 14 12 20 20 C 1.46498 * 120.00072 * 185.30847 * 10 8 7 21 21 C 1.53001 * 109.47269 * 299.20683 * 20 10 8 22 22 C 1.52999 * 109.47101 * 59.20757 * 20 10 8 23 23 C 1.38238 * 120.00171 * 359.78972 * 6 5 4 24 24 C 1.38229 * 120.00068 * 89.99493 * 3 2 1 25 25 H 1.09001 * 109.46756 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.46849 * 60.00262 * 1 2 3 27 27 H 1.08996 * 109.46761 * 299.99926 * 1 2 3 28 28 H 1.09006 * 109.47114 * 120.00361 * 2 1 3 29 29 H 1.09008 * 109.46770 * 239.99632 * 2 1 3 30 30 H 1.07998 * 120.00399 * 359.97438 * 4 3 2 31 31 H 1.08005 * 120.00040 * 180.24407 * 5 4 3 32 32 H 1.09003 * 109.46796 * 30.02166 * 7 6 5 33 33 H 1.08992 * 109.47578 * 150.01918 * 7 6 5 34 34 H 1.09007 * 109.46737 * 210.00038 * 11 10 8 35 35 H 1.09003 * 109.47318 * 329.99835 * 11 10 8 36 36 H 0.97003 * 120.00151 * 179.97438 * 15 14 12 37 37 H 1.09007 * 109.47323 * 179.20577 * 20 10 8 38 38 H 1.09002 * 109.46811 * 66.61911 * 21 20 10 39 39 H 1.08995 * 109.47080 * 186.61969 * 21 20 10 40 40 H 1.08997 * 109.46998 * 306.62033 * 21 20 10 41 41 H 1.09001 * 109.47118 * 53.89164 * 22 20 10 42 42 H 1.09005 * 109.47158 * 173.88978 * 22 20 10 43 43 H 1.08998 * 109.47311 * 293.88566 * 22 20 10 44 44 H 1.08000 * 120.00135 * 179.97438 * 23 6 5 45 45 H 1.07998 * 120.00164 * 0.02562 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0325 1.4208 0.0000 4 6 2.2681 2.0705 -1.1972 5 6 2.7243 3.3754 -1.1972 6 6 2.9543 4.0272 -0.0001 7 6 3.4566 5.4480 -0.0001 8 6 4.9636 5.4481 -0.0002 9 8 5.5701 4.3986 0.0411 10 7 5.6375 6.6144 -0.0460 11 6 4.9097 7.8840 0.0216 12 6 4.7741 8.3093 1.4609 13 1 5.1883 7.6951 2.2468 14 6 4.1204 9.4820 1.7747 15 7 3.6156 10.2297 0.8178 16 14 3.9517 10.0088 3.5590 17 1 5.1167 10.8472 3.9397 18 1 2.7017 10.7924 3.7276 19 1 3.9027 8.8054 4.4278 20 6 7.0978 6.6125 -0.1635 21 6 7.7058 5.8990 1.0456 22 6 7.5054 5.8823 -1.4447 23 6 2.7240 3.3756 1.1971 24 6 2.2628 2.0725 1.1971 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5139 0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 2.0926 1.5598 -2.1325 31 1 2.9047 3.8844 -2.1325 32 1 3.0932 5.9619 -0.8901 33 1 3.0933 5.9619 0.8898 34 1 5.4571 8.6466 -0.5325 35 1 3.9189 7.7586 -0.4151 36 1 3.1553 11.0546 1.0385 37 1 7.4607 7.6397 -0.1996 38 1 7.4379 4.8428 1.0168 39 1 8.7908 5.9995 1.0190 40 1 7.3219 6.3463 1.9624 41 1 6.9861 6.3238 -2.2954 42 1 8.5820 5.9743 -1.5886 43 1 7.2385 4.8287 -1.3630 44 1 2.9040 3.8847 2.1324 45 1 2.0831 1.5633 2.1324 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000525060308.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:05 Heat of formation + Delta-G solvation = -35.763426 kcal Electronic energy + Delta-G solvation = -23228.792201 eV Core-core repulsion = 20017.229995 eV Total energy + Delta-G solvation = -3211.562206 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.72964 -38.74711 -35.44390 -34.38991 -33.19175 -31.79656 -30.64110 -30.47480 -27.18354 -26.63768 -26.56175 -23.42024 -22.78756 -22.45207 -21.47433 -20.23528 -18.00826 -16.65167 -16.02958 -15.94133 -15.49764 -15.35343 -14.66305 -14.43175 -14.24526 -13.67986 -13.60694 -13.52217 -13.11618 -12.97571 -12.68873 -12.55439 -12.26356 -11.94209 -11.74578 -11.68427 -11.53493 -11.43698 -11.31271 -11.06438 -10.94637 -10.88584 -10.65464 -10.62812 -10.54032 -10.37206 -10.06610 -9.70334 -8.82816 -8.61089 -8.57021 -8.15747 -7.65462 -6.18933 -4.26350 1.62046 1.71733 3.21888 3.29297 3.32058 3.49386 3.85687 4.18234 4.34687 4.81976 4.90736 5.13650 5.20396 5.23206 5.24815 5.33550 5.38764 5.52732 5.64382 5.70966 5.73247 5.74296 5.83675 5.90671 5.91846 6.02885 6.09097 6.10468 6.18379 6.24466 6.36816 6.37837 6.43936 6.49321 6.68909 6.76809 6.83346 6.83496 6.89744 6.99624 7.18809 7.30986 7.62990 7.77508 8.06186 8.41446 8.80878 9.10934 9.42145 10.87540 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.014841 B = 0.004484 C = 0.003803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1886.187817 B = 6242.678108 C = 7361.317544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.082 4.082 3 C -0.095 4.095 4 C -0.119 4.119 5 C -0.106 4.106 6 C -0.051 4.051 7 C -0.103 4.103 8 C 0.523 3.477 9 O -0.562 6.562 10 N -0.595 5.595 11 C 0.236 3.764 12 C -0.536 4.536 13 H 0.061 0.939 14 C 0.065 3.935 15 N -0.892 5.892 16 Si 0.895 3.105 17 H -0.279 1.279 18 H -0.285 1.285 19 H -0.273 1.273 20 C 0.149 3.851 21 C -0.162 4.162 22 C -0.164 4.164 23 C -0.101 4.101 24 C -0.118 4.118 25 H 0.053 0.947 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.115 0.885 31 H 0.117 0.883 32 H 0.096 0.904 33 H 0.111 0.889 34 H 0.034 0.966 35 H 0.039 0.961 36 H 0.265 0.735 37 H 0.081 0.919 38 H 0.073 0.927 39 H 0.048 0.952 40 H 0.056 0.944 41 H 0.049 0.951 42 H 0.053 0.947 43 H 0.071 0.929 44 H 0.120 0.880 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.464 -13.359 -3.184 13.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.119 4.119 3 C -0.095 4.095 4 C -0.137 4.137 5 C -0.124 4.124 6 C -0.051 4.051 7 C -0.142 4.142 8 C 0.311 3.689 9 O -0.443 6.443 10 N -0.326 5.326 11 C 0.116 3.884 12 C -0.575 4.575 13 H 0.079 0.921 14 C -0.138 4.138 15 N -0.530 5.530 16 Si 0.722 3.278 17 H -0.205 1.205 18 H -0.210 1.210 19 H -0.198 1.198 20 C 0.045 3.955 21 C -0.220 4.220 22 C -0.222 4.222 23 C -0.119 4.119 24 C -0.136 4.136 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.133 0.867 31 H 0.135 0.865 32 H 0.114 0.886 33 H 0.129 0.871 34 H 0.052 0.948 35 H 0.056 0.944 36 H 0.075 0.925 37 H 0.099 0.901 38 H 0.092 0.908 39 H 0.067 0.933 40 H 0.075 0.925 41 H 0.068 0.932 42 H 0.072 0.928 43 H 0.090 0.910 44 H 0.138 0.862 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -2.246 -13.691 -3.204 14.240 hybrid contribution -0.105 0.783 1.020 1.290 sum -2.351 -12.909 -2.184 13.301 Atomic orbital electron populations 1.21748 0.95039 1.01272 1.02248 1.20494 0.95907 0.93088 1.02429 1.19761 1.00439 0.95952 0.93343 1.20868 1.00871 0.94841 0.97138 1.20947 0.99263 0.94723 0.97485 1.19495 0.97205 0.95226 0.93222 1.20709 0.93810 0.93868 1.05859 1.20198 0.89245 0.83412 0.76005 1.90557 1.70161 1.31794 1.51791 1.48329 1.06071 1.07689 1.70493 1.19459 0.92203 0.79359 0.97354 1.21518 1.36687 1.06807 0.92494 0.92084 1.24940 0.95090 0.96165 0.97588 1.69919 1.36979 1.14093 1.32021 0.86540 0.77652 0.78786 0.84787 1.20537 1.21047 1.19772 1.20799 0.80717 0.99499 0.94443 1.22165 0.99030 1.02629 0.98224 1.22180 1.00221 1.02542 0.97251 1.21006 0.98532 0.94652 0.97756 1.20895 1.00671 0.94869 0.97176 0.92762 0.92603 0.92577 0.91368 0.91392 0.86684 0.86512 0.88614 0.87133 0.94813 0.94356 0.92533 0.90058 0.90848 0.93303 0.92499 0.93180 0.92756 0.91011 0.86230 0.86634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.90 37.16 0.37 -0.94 16 2 C -0.08 -0.83 6.07 -27.88 -0.17 -1.00 16 3 C -0.09 -1.26 5.13 -104.63 -0.54 -1.79 16 4 C -0.12 -1.64 9.70 -39.58 -0.38 -2.02 16 5 C -0.11 -1.64 9.70 -39.59 -0.38 -2.02 16 6 C -0.05 -0.87 4.37 -104.63 -0.46 -1.32 16 7 C -0.10 -1.89 4.32 -29.03 -0.13 -2.01 16 8 C 0.52 10.72 7.07 -10.99 -0.08 10.64 16 9 O -0.56 -12.27 12.42 5.55 0.07 -12.20 16 10 N -0.59 -12.39 2.41 -167.47 -0.40 -12.79 16 11 C 0.24 5.52 4.99 -5.20 -0.03 5.49 16 12 C -0.54 -13.77 9.39 -34.44 -0.32 -14.09 16 13 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 14 C 0.07 1.70 5.46 -17.82 -0.10 1.61 16 15 N -0.89 -24.31 13.29 55.43 0.74 -23.58 16 16 Si 0.89 20.44 29.54 -169.99 -5.02 15.42 16 17 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 18 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 19 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 20 C 0.15 2.80 3.28 -67.93 -0.22 2.58 16 21 C -0.16 -2.95 9.01 37.16 0.33 -2.61 16 22 C -0.16 -2.72 9.01 37.16 0.33 -2.38 16 23 C -0.10 -1.64 9.70 -39.58 -0.38 -2.03 16 24 C -0.12 -1.67 9.70 -39.59 -0.38 -2.06 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.07 0.64 8.09 -51.93 -0.42 0.22 16 29 H 0.07 0.63 8.08 -51.92 -0.42 0.21 16 30 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 31 H 0.12 1.65 8.06 -52.48 -0.42 1.23 16 32 H 0.10 1.65 7.42 -51.93 -0.39 1.26 16 33 H 0.11 2.13 8.04 -51.93 -0.42 1.71 16 34 H 0.03 0.83 7.91 -51.92 -0.41 0.42 16 35 H 0.04 0.91 6.38 -51.93 -0.33 0.58 16 36 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 37 H 0.08 1.52 7.79 -51.93 -0.40 1.11 16 38 H 0.07 1.43 6.27 -51.93 -0.33 1.10 16 39 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 41 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 43 H 0.07 1.30 6.47 -51.93 -0.34 0.97 16 44 H 0.12 1.89 8.06 -52.49 -0.42 1.46 16 45 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 LS Contribution 367.59 15.07 5.54 5.54 Total: -1.00 -28.37 367.59 -9.26 -37.63 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -7.65 Total: 3.96 kcal Atomic # 6 Polarization: -11.44 SS G_CDS: -2.53 Total: -13.97 kcal Atomic # 7 Polarization: -36.71 SS G_CDS: 0.33 Total: -36.37 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: 0.07 Total: -12.20 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -28.37 -9.26 -37.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000525060308.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.863 kcal (2) G-P(sol) polarization free energy of solvation -28.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds