Wall clock time and date at job start Tue Mar 31 2020 06:11:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50700 * 109.47339 * 2 1 4 4 C 1.38235 * 119.99665 * 269.73192 * 3 2 1 5 5 C 1.38234 * 119.99598 * 179.76424 * 4 3 2 6 6 C 1.38229 * 120.00102 * 0.48154 * 5 4 3 7 7 C 1.50701 * 120.00365 * 179.76796 * 6 5 4 8 8 C 1.50702 * 109.47288 * 270.02576 * 7 6 5 9 9 O 1.21285 * 119.99785 * 357.74346 * 8 7 6 10 10 N 1.34774 * 120.00282 * 177.74810 * 8 7 6 11 11 C 1.46500 * 119.99739 * 5.30636 * 10 8 7 12 12 C 1.50694 * 109.47219 * 90.00629 * 11 10 8 13 13 H 1.07999 * 120.00265 * 359.97438 * 12 11 10 14 14 C 1.37879 * 119.99969 * 180.02562 * 12 11 10 15 15 N 1.31512 * 120.00142 * 359.97438 * 14 12 11 16 16 Si 1.86809 * 119.99931 * 179.97438 * 14 12 11 17 17 H 1.48493 * 109.46890 * 89.99551 * 16 14 12 18 18 H 1.48498 * 109.46920 * 209.99686 * 16 14 12 19 19 H 1.48504 * 109.46793 * 329.99546 * 16 14 12 20 20 C 1.46498 * 120.00072 * 185.30847 * 10 8 7 21 21 C 1.53001 * 109.47269 * 299.20683 * 20 10 8 22 22 C 1.52999 * 109.47101 * 59.20757 * 20 10 8 23 23 C 1.38238 * 120.00171 * 359.78972 * 6 5 4 24 24 C 1.38229 * 120.00068 * 89.99493 * 3 2 1 25 25 H 1.09001 * 109.46756 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.46849 * 60.00262 * 1 2 3 27 27 H 1.08996 * 109.46761 * 299.99926 * 1 2 3 28 28 H 1.09006 * 109.47114 * 120.00361 * 2 1 3 29 29 H 1.09008 * 109.46770 * 239.99632 * 2 1 3 30 30 H 1.07998 * 120.00399 * 359.97438 * 4 3 2 31 31 H 1.08005 * 120.00040 * 180.24407 * 5 4 3 32 32 H 1.09003 * 109.46796 * 30.02166 * 7 6 5 33 33 H 1.08992 * 109.47578 * 150.01918 * 7 6 5 34 34 H 1.09007 * 109.46737 * 210.00038 * 11 10 8 35 35 H 1.09003 * 109.47318 * 329.99835 * 11 10 8 36 36 H 0.97003 * 120.00151 * 179.97438 * 15 14 12 37 37 H 1.09007 * 109.47323 * 179.20577 * 20 10 8 38 38 H 1.09002 * 109.46811 * 66.61911 * 21 20 10 39 39 H 1.08995 * 109.47080 * 186.61969 * 21 20 10 40 40 H 1.08997 * 109.46998 * 306.62033 * 21 20 10 41 41 H 1.09001 * 109.47118 * 53.89164 * 22 20 10 42 42 H 1.09005 * 109.47158 * 173.88978 * 22 20 10 43 43 H 1.08998 * 109.47311 * 293.88566 * 22 20 10 44 44 H 1.08000 * 120.00135 * 179.97438 * 23 6 5 45 45 H 1.07998 * 120.00164 * 0.02562 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0325 1.4208 0.0000 4 6 2.2681 2.0705 -1.1972 5 6 2.7243 3.3754 -1.1972 6 6 2.9543 4.0272 -0.0001 7 6 3.4566 5.4480 -0.0001 8 6 4.9636 5.4481 -0.0002 9 8 5.5701 4.3986 0.0411 10 7 5.6375 6.6144 -0.0460 11 6 4.9097 7.8840 0.0216 12 6 4.7741 8.3093 1.4609 13 1 5.1883 7.6951 2.2468 14 6 4.1204 9.4820 1.7747 15 7 3.6156 10.2297 0.8178 16 14 3.9517 10.0088 3.5590 17 1 5.1167 10.8472 3.9397 18 1 2.7017 10.7924 3.7276 19 1 3.9027 8.8054 4.4278 20 6 7.0978 6.6125 -0.1635 21 6 7.7058 5.8990 1.0456 22 6 7.5054 5.8823 -1.4447 23 6 2.7240 3.3756 1.1971 24 6 2.2628 2.0725 1.1971 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5139 0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 2.0926 1.5598 -2.1325 31 1 2.9047 3.8844 -2.1325 32 1 3.0932 5.9619 -0.8901 33 1 3.0933 5.9619 0.8898 34 1 5.4571 8.6466 -0.5325 35 1 3.9189 7.7586 -0.4151 36 1 3.1553 11.0546 1.0385 37 1 7.4607 7.6397 -0.1996 38 1 7.4379 4.8428 1.0168 39 1 8.7908 5.9995 1.0190 40 1 7.3219 6.3463 1.9624 41 1 6.9861 6.3238 -2.2954 42 1 8.5820 5.9743 -1.5886 43 1 7.2385 4.8287 -1.3630 44 1 2.9040 3.8847 2.1324 45 1 2.0831 1.5633 2.1324 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000525060308.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:04 Heat of formation + Delta-G solvation = -47.662522 kcal Electronic energy + Delta-G solvation = -23229.308185 eV Core-core repulsion = 20017.229995 eV Total energy + Delta-G solvation = -3212.078190 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.19895 -40.03791 -37.03953 -35.59969 -34.94328 -33.42336 -31.78031 -31.70450 -28.96028 -28.02136 -27.95098 -24.89639 -24.27291 -23.59343 -22.84103 -21.37607 -19.61820 -18.63267 -17.66453 -17.34953 -16.72563 -16.63385 -16.27262 -15.88121 -15.72978 -15.05995 -14.59772 -14.55157 -14.45121 -14.36673 -14.13758 -13.99586 -13.68032 -13.53929 -13.22955 -13.13453 -12.88907 -12.72472 -12.70652 -12.61394 -12.48529 -12.18056 -12.10785 -12.00555 -11.78776 -11.66835 -11.61652 -11.59911 -10.63545 -10.38609 -9.76367 -9.40800 -9.33759 -8.20373 -6.34823 0.45610 0.56187 1.39661 1.41982 1.51038 1.83907 2.32201 2.45159 2.92630 3.09501 3.81080 3.85119 3.91949 4.01561 4.17663 4.21652 4.24566 4.28949 4.41197 4.49772 4.55469 4.62272 4.69663 4.73339 4.78059 4.78894 4.82958 4.95913 5.01292 5.05061 5.08672 5.11300 5.15910 5.23393 5.26573 5.31567 5.42088 5.42760 5.55513 5.68245 5.75815 5.77673 5.97584 6.07499 6.17805 6.61507 6.85810 7.33949 7.48177 8.84757 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.014841 B = 0.004484 C = 0.003803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1886.187817 B = 6242.678108 C = 7361.317544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.080 4.080 3 C -0.092 4.092 4 C -0.121 4.121 5 C -0.118 4.118 6 C -0.075 4.075 7 C -0.095 4.095 8 C 0.520 3.480 9 O -0.574 6.574 10 N -0.599 5.599 11 C 0.251 3.749 12 C -0.544 4.544 13 H 0.050 0.950 14 C 0.023 3.977 15 N -0.919 5.919 16 Si 0.953 3.047 17 H -0.275 1.275 18 H -0.279 1.279 19 H -0.273 1.273 20 C 0.137 3.863 21 C -0.152 4.152 22 C -0.151 4.151 23 C -0.121 4.121 24 C -0.123 4.123 25 H 0.073 0.927 26 H 0.052 0.948 27 H 0.049 0.951 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.142 0.858 31 H 0.124 0.876 32 H 0.101 0.899 33 H 0.094 0.906 34 H 0.020 0.980 35 H 0.031 0.969 36 H 0.268 0.732 37 H 0.081 0.919 38 H 0.057 0.943 39 H 0.080 0.920 40 H 0.035 0.965 41 H 0.049 0.951 42 H 0.084 0.916 43 H 0.055 0.945 44 H 0.112 0.888 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.537 -14.897 -3.238 15.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.118 4.118 3 C -0.092 4.092 4 C -0.139 4.139 5 C -0.136 4.136 6 C -0.076 4.076 7 C -0.135 4.135 8 C 0.309 3.691 9 O -0.456 6.456 10 N -0.330 5.330 11 C 0.130 3.870 12 C -0.583 4.583 13 H 0.068 0.932 14 C -0.177 4.177 15 N -0.558 5.558 16 Si 0.778 3.222 17 H -0.200 1.200 18 H -0.205 1.205 19 H -0.198 1.198 20 C 0.034 3.966 21 C -0.210 4.210 22 C -0.209 4.209 23 C -0.140 4.140 24 C -0.141 4.141 25 H 0.092 0.908 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.096 0.904 29 H 0.099 0.901 30 H 0.160 0.840 31 H 0.142 0.858 32 H 0.119 0.881 33 H 0.112 0.888 34 H 0.038 0.962 35 H 0.049 0.951 36 H 0.077 0.923 37 H 0.099 0.901 38 H 0.077 0.923 39 H 0.098 0.902 40 H 0.055 0.945 41 H 0.068 0.932 42 H 0.102 0.898 43 H 0.074 0.926 44 H 0.130 0.870 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -2.309 -15.238 -3.261 15.753 hybrid contribution -0.069 1.198 1.016 1.573 sum -2.378 -14.040 -2.244 14.416 Atomic orbital electron populations 1.21730 0.94029 1.02444 1.01867 1.20568 0.96646 0.90938 1.03603 1.20190 0.98873 0.97433 0.92700 1.21210 0.99866 0.94170 0.98625 1.21128 0.99582 0.95713 0.97152 1.19472 0.99082 0.94648 0.94360 1.20606 0.92382 0.95292 1.05195 1.20527 0.90093 0.83002 0.75437 1.90537 1.70673 1.32048 1.52336 1.48348 1.07074 1.06926 1.70639 1.19111 0.91887 0.80019 0.95962 1.21676 1.36537 1.06819 0.93252 0.93202 1.25610 0.94781 0.96193 1.01124 1.69999 1.37615 1.14508 1.33712 0.85631 0.77792 0.78300 0.80431 1.20027 1.20465 1.19753 1.21060 0.79569 1.00005 0.95941 1.22058 1.00903 1.01142 0.96900 1.22059 1.02111 1.00909 0.95843 1.21107 0.99719 0.95854 0.97285 1.21168 1.00064 0.94102 0.98729 0.90840 0.92854 0.93142 0.90409 0.90070 0.84028 0.85838 0.88113 0.88776 0.96239 0.95064 0.92309 0.90064 0.92349 0.90163 0.94544 0.93170 0.89756 0.92616 0.87002 0.84582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 9.90 71.98 0.71 -1.46 16 2 C -0.08 -1.39 6.07 29.85 0.18 -1.21 16 3 C -0.09 -2.26 5.13 -19.87 -0.10 -2.36 16 4 C -0.12 -3.12 9.70 22.27 0.22 -2.90 16 5 C -0.12 -3.60 9.70 22.27 0.22 -3.38 16 6 C -0.08 -2.61 4.37 -19.87 -0.09 -2.69 16 7 C -0.10 -3.63 4.32 29.10 0.13 -3.50 16 8 C 0.52 21.85 7.07 87.66 0.62 22.47 16 9 O -0.57 -25.45 12.42 -3.05 -0.04 -25.49 16 10 N -0.60 -25.48 2.41 -802.13 -1.93 -27.41 16 11 C 0.25 12.05 4.99 85.63 0.43 12.48 16 12 C -0.54 -28.49 9.39 25.60 0.24 -28.25 16 13 H 0.05 2.68 7.81 -2.91 -0.02 2.66 16 14 C 0.02 1.23 5.46 84.66 0.46 1.69 16 15 N -0.92 -50.55 13.29 21.45 0.28 -50.27 16 16 Si 0.95 42.06 29.54 68.60 2.03 44.08 16 17 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 18 H -0.28 -12.02 7.11 99.48 0.71 -11.32 16 19 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 20 C 0.14 5.13 3.28 44.99 0.15 5.27 16 21 C -0.15 -5.46 9.01 71.98 0.65 -4.81 16 22 C -0.15 -4.86 9.01 71.98 0.65 -4.21 16 23 C -0.12 -4.00 9.70 22.27 0.22 -3.79 16 24 C -0.12 -3.36 9.70 22.27 0.22 -3.15 16 25 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.08 1.23 8.09 -2.38 -0.02 1.21 16 29 H 0.08 1.23 8.08 -2.38 -0.02 1.21 16 30 H 0.14 2.83 8.06 -2.91 -0.02 2.80 16 31 H 0.12 3.47 8.06 -2.91 -0.02 3.45 16 32 H 0.10 3.63 7.42 -2.39 -0.02 3.61 16 33 H 0.09 3.84 8.04 -2.39 -0.02 3.82 16 34 H 0.02 0.99 7.91 -2.38 -0.02 0.97 16 35 H 0.03 1.54 6.38 -2.39 -0.02 1.52 16 36 H 0.27 13.96 8.31 -92.71 -0.77 13.19 16 37 H 0.08 3.01 7.79 -2.38 -0.02 2.99 16 38 H 0.06 2.27 6.27 -2.39 -0.01 2.25 16 39 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 40 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.08 2.18 8.14 -2.38 -0.02 2.16 16 43 H 0.05 1.98 6.47 -2.39 -0.02 1.96 16 44 H 0.11 3.71 8.06 -2.91 -0.02 3.68 16 45 H 0.14 3.05 8.06 -2.91 -0.02 3.03 16 Total: -1.00 -60.50 367.59 6.17 -54.33 By element: Atomic # 1 Polarization: 23.61 SS G_CDS: 0.94 Total: 24.55 kcal Atomic # 6 Polarization: -24.69 SS G_CDS: 4.89 Total: -19.80 kcal Atomic # 7 Polarization: -76.03 SS G_CDS: -1.65 Total: -77.67 kcal Atomic # 8 Polarization: -25.45 SS G_CDS: -0.04 Total: -25.49 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.08 kcal Total: -60.50 6.17 -54.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000525060308.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.669 kcal (2) G-P(sol) polarization free energy of solvation -60.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds