Wall clock time and date at job start Tue Mar 31 2020 06:11:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50701 * 109.46674 * 2 1 4 4 C 1.38260 * 120.00106 * 265.02244 * 3 2 1 5 5 C 1.38212 * 120.00041 * 179.97438 * 4 3 2 6 6 C 1.38258 * 120.00085 * 359.73665 * 5 4 3 7 7 C 1.38211 * 119.99784 * 0.52159 * 6 5 4 8 8 C 1.38214 * 120.00231 * 84.99924 * 3 2 1 9 9 C 1.50703 * 119.99514 * 0.02562 * 8 3 2 10 10 C 1.50697 * 109.47165 * 85.02274 * 9 8 3 11 11 O 1.21275 * 120.00324 * 359.97438 * 10 9 8 12 12 N 1.34778 * 119.99478 * 179.97438 * 10 9 8 13 13 C 1.46498 * 119.99613 * 179.97438 * 12 10 9 14 14 C 1.50699 * 109.46946 * 90.00377 * 13 12 10 15 15 H 1.07997 * 120.00324 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99942 * 179.97438 * 14 13 12 17 17 N 1.31512 * 120.00102 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99884 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47452 * 60.00085 * 18 16 14 20 20 H 1.48504 * 109.47372 * 180.02562 * 18 16 14 21 21 H 1.48507 * 109.47073 * 299.99837 * 18 16 14 22 22 C 1.46493 * 120.00451 * 0.02562 * 12 10 9 23 23 C 1.53003 * 109.47525 * 119.99730 * 22 12 10 24 24 C 1.53003 * 109.47505 * 239.99813 * 22 12 10 25 25 H 1.09005 * 109.46724 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47450 * 299.99868 * 1 2 3 27 27 H 1.08997 * 109.47200 * 60.00398 * 1 2 3 28 28 H 1.09001 * 109.47450 * 240.00132 * 2 1 3 29 29 H 1.08997 * 109.47200 * 119.99602 * 2 1 3 30 30 H 1.08001 * 119.99581 * 359.97438 * 4 3 2 31 31 H 1.08004 * 119.99477 * 180.02562 * 5 4 3 32 32 H 1.07998 * 119.99823 * 180.27809 * 6 5 4 33 33 H 1.08002 * 120.00200 * 179.76459 * 7 6 5 34 34 H 1.09007 * 109.46568 * 205.02353 * 9 8 3 35 35 H 1.09002 * 109.47211 * 325.01705 * 9 8 3 36 36 H 1.09000 * 109.47643 * 210.00365 * 13 12 10 37 37 H 1.08998 * 109.47488 * 330.00504 * 13 12 10 38 38 H 0.97000 * 120.00107 * 179.97438 * 17 16 14 39 39 H 1.09002 * 109.47512 * 359.97438 * 22 12 10 40 40 H 1.08998 * 109.47243 * 59.99998 * 23 22 12 41 41 H 1.09002 * 109.47490 * 180.02562 * 23 22 12 42 42 H 1.09008 * 109.47010 * 300.00512 * 23 22 12 43 43 H 1.09001 * 109.46616 * 59.99612 * 24 22 12 44 44 H 1.08994 * 109.47505 * 180.02562 * 24 22 12 45 45 H 1.09006 * 109.46707 * 299.99989 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.3606 2.0380 -1.1928 5 6 2.8207 3.3413 -1.1929 6 6 2.9474 4.0297 -0.0006 7 6 2.6243 3.4110 1.1923 8 6 2.1642 2.1072 1.1924 9 6 1.8064 1.4345 2.4926 10 6 2.9862 0.6384 2.9876 11 8 4.0161 0.6188 2.3475 12 7 2.8968 -0.0519 4.1418 13 6 4.0436 -0.8262 4.6228 14 6 4.9035 0.0437 5.5030 15 1 4.6236 1.0706 5.6861 16 6 6.0472 -0.4716 6.0753 17 7 6.3873 -1.7225 5.8535 18 14 7.1127 0.6066 7.1670 19 1 6.3140 1.0805 8.3256 20 1 8.2753 -0.1783 7.6545 21 1 7.5964 1.7748 6.3881 22 6 1.6526 -0.0287 4.9147 23 6 1.1085 -1.4524 5.0483 24 6 1.9272 0.5450 6.3063 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 2.2575 1.5017 -2.1246 31 1 3.0768 3.8235 -2.1248 32 1 3.3027 5.0496 -0.0011 33 1 2.7269 3.9474 2.1241 34 1 1.5420 2.1905 3.2320 35 1 0.9584 0.7679 2.3354 36 1 3.6890 -1.6837 5.1947 37 1 4.6296 -1.1742 3.7722 38 1 7.1921 -2.0849 6.2559 39 1 0.9188 0.5946 4.4036 40 1 1.8423 -2.0753 5.5597 41 1 0.1825 -1.4351 5.6231 42 1 0.9128 -1.8611 4.0569 43 1 2.3149 1.5593 6.2111 44 1 1.0016 0.5618 6.8816 45 1 2.6611 -0.0780 6.8177 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000525949854.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:07 Heat of formation + Delta-G solvation = -29.098938 kcal Electronic energy + Delta-G solvation = -23830.175042 eV Core-core repulsion = 20618.901830 eV Total energy + Delta-G solvation = -3211.273212 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.94980 -38.55914 -35.88489 -34.17642 -32.89896 -32.20540 -30.78640 -29.41254 -28.28843 -26.77171 -26.32632 -23.76416 -22.93284 -21.78628 -21.17883 -20.31958 -17.98228 -16.64714 -16.44410 -16.23719 -15.81731 -15.18079 -14.76688 -14.26736 -14.07267 -13.70256 -13.51359 -13.44267 -13.25789 -12.89171 -12.72360 -12.64751 -12.30380 -11.96092 -11.72863 -11.64444 -11.58282 -11.50465 -11.26433 -11.08261 -10.90146 -10.84612 -10.66829 -10.56594 -10.45908 -10.34526 -9.98856 -9.52293 -8.94775 -8.55705 -8.38984 -8.31223 -7.59806 -6.00258 -4.03314 1.55600 1.60961 3.33042 3.37948 3.39966 3.50094 3.82054 4.13285 4.47965 4.83882 4.90288 5.07075 5.12012 5.20914 5.24497 5.30819 5.35157 5.38832 5.46516 5.55394 5.61077 5.65134 5.68911 5.72307 5.80758 5.95223 6.01288 6.02469 6.13941 6.18379 6.25021 6.31503 6.36373 6.38012 6.61218 6.66840 6.68922 6.88281 6.97533 7.14406 7.22971 7.51121 7.62212 7.96889 8.29504 8.50123 8.95731 9.17366 9.60710 11.07867 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.016336 B = 0.005020 C = 0.004390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.609817 B = 5576.005019 C = 6376.211538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.089 4.089 3 C -0.064 4.064 4 C -0.120 4.120 5 C -0.124 4.124 6 C -0.126 4.126 7 C -0.105 4.105 8 C -0.051 4.051 9 C -0.110 4.110 10 C 0.508 3.492 11 O -0.532 6.532 12 N -0.595 5.595 13 C 0.247 3.753 14 C -0.518 4.518 15 H 0.057 0.943 16 C 0.060 3.940 17 N -0.896 5.896 18 Si 0.894 3.106 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 C 0.133 3.867 23 C -0.162 4.162 24 C -0.157 4.157 25 H 0.057 0.943 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.117 0.883 31 H 0.116 0.884 32 H 0.117 0.883 33 H 0.119 0.881 34 H 0.093 0.907 35 H 0.096 0.904 36 H 0.033 0.967 37 H 0.040 0.960 38 H 0.262 0.738 39 H 0.074 0.926 40 H 0.068 0.932 41 H 0.058 0.942 42 H 0.051 0.949 43 H 0.053 0.947 44 H 0.048 0.952 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.697 5.874 -8.520 17.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.127 4.127 3 C -0.064 4.064 4 C -0.138 4.138 5 C -0.142 4.142 6 C -0.144 4.144 7 C -0.123 4.123 8 C -0.052 4.052 9 C -0.150 4.150 10 C 0.294 3.706 11 O -0.408 6.408 12 N -0.327 5.327 13 C 0.128 3.872 14 C -0.557 4.557 15 H 0.075 0.925 16 C -0.141 4.141 17 N -0.535 5.535 18 Si 0.722 3.278 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.203 1.203 22 C 0.028 3.972 23 C -0.220 4.220 24 C -0.215 4.215 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.088 0.912 29 H 0.094 0.906 30 H 0.135 0.865 31 H 0.134 0.866 32 H 0.136 0.864 33 H 0.137 0.863 34 H 0.111 0.889 35 H 0.114 0.886 36 H 0.051 0.949 37 H 0.058 0.942 38 H 0.072 0.928 39 H 0.092 0.908 40 H 0.087 0.913 41 H 0.077 0.923 42 H 0.070 0.930 43 H 0.072 0.928 44 H 0.067 0.933 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -13.992 5.695 -8.796 17.481 hybrid contribution 0.785 0.625 0.768 1.264 sum -13.206 6.320 -8.028 16.698 Atomic orbital electron populations 1.21760 0.94945 1.01604 1.01927 1.20562 0.95692 0.93066 1.03330 1.19641 0.98582 0.95600 0.92606 1.20925 1.00519 0.95188 0.97205 1.21024 1.00466 0.94909 0.97825 1.21016 1.00954 0.99813 0.92606 1.20980 0.98625 0.94646 0.98059 1.19217 0.98799 0.93771 0.93381 1.20854 0.98717 1.00030 0.95372 1.20122 0.88699 0.80381 0.81434 1.90696 1.30970 1.62564 1.56595 1.48334 1.14503 1.48807 1.21080 1.19206 0.82126 0.90663 0.95196 1.21400 1.07714 0.97944 1.28600 0.92513 1.24917 0.97322 0.95049 0.96842 1.69919 1.25469 1.13519 1.44640 0.86630 0.79985 0.80565 0.80664 1.20295 1.21260 1.20290 1.20992 0.86357 0.96534 0.93325 1.22161 1.00883 0.97259 1.01687 1.22142 1.01268 1.02025 0.96073 0.92419 0.92558 0.92695 0.91166 0.90646 0.86491 0.86551 0.86450 0.86335 0.88868 0.88592 0.94865 0.94184 0.92786 0.90831 0.91296 0.92311 0.92951 0.92800 0.93309 0.90063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.72 37.16 0.36 -1.14 16 2 C -0.09 -1.18 5.38 -27.88 -0.15 -1.33 16 3 C -0.06 -0.95 5.13 -104.62 -0.54 -1.49 16 4 C -0.12 -1.62 9.68 -39.58 -0.38 -2.01 16 5 C -0.12 -1.60 10.05 -39.58 -0.40 -2.00 16 6 C -0.13 -1.70 10.05 -39.58 -0.40 -2.09 16 7 C -0.11 -1.58 9.68 -39.58 -0.38 -1.97 16 8 C -0.05 -0.81 4.37 -104.62 -0.46 -1.27 16 9 C -0.11 -1.69 3.47 -29.04 -0.10 -1.79 16 10 C 0.51 10.55 6.87 -10.99 -0.08 10.47 16 11 O -0.53 -13.59 15.61 5.56 0.09 -13.50 16 12 N -0.59 -12.36 2.39 -167.48 -0.40 -12.76 16 13 C 0.25 6.37 4.59 -5.20 -0.02 6.34 16 14 C -0.52 -14.42 7.83 -34.44 -0.27 -14.69 16 15 H 0.06 1.58 7.63 -52.49 -0.40 1.18 16 16 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 17 N -0.90 -26.62 13.29 55.43 0.74 -25.88 16 18 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 21 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 22 C 0.13 2.13 3.17 -67.93 -0.22 1.91 16 23 C -0.16 -2.33 9.17 37.16 0.34 -1.99 16 24 C -0.16 -2.57 8.48 37.16 0.32 -2.25 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.57 6.80 -51.93 -0.35 0.21 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.07 0.87 8.05 -51.93 -0.42 0.45 16 29 H 0.07 1.16 6.42 -51.93 -0.33 0.83 16 30 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 31 H 0.12 1.19 8.06 -52.48 -0.42 0.76 16 32 H 0.12 1.30 8.06 -52.49 -0.42 0.87 16 33 H 0.12 1.65 8.06 -52.49 -0.42 1.23 16 34 H 0.09 1.26 7.70 -51.93 -0.40 0.86 16 35 H 0.10 1.25 5.27 -51.93 -0.27 0.98 16 36 H 0.03 0.86 6.42 -51.93 -0.33 0.53 16 37 H 0.04 1.19 7.42 -51.93 -0.39 0.80 16 38 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 39 H 0.07 0.97 5.77 -51.93 -0.30 0.67 16 40 H 0.07 1.14 6.66 -51.93 -0.35 0.80 16 41 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.05 0.72 8.14 -51.92 -0.42 0.30 16 43 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 44 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.08 1.58 6.93 -51.93 -0.36 1.22 16 LS Contribution 359.72 15.07 5.42 5.42 Total: -1.00 -32.96 359.72 -8.91 -41.87 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -7.27 Total: 1.58 kcal Atomic # 6 Polarization: -11.19 SS G_CDS: -2.47 Total: -13.66 kcal Atomic # 7 Polarization: -38.98 SS G_CDS: 0.34 Total: -38.64 kcal Atomic # 8 Polarization: -13.59 SS G_CDS: 0.09 Total: -13.50 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.96 -8.91 -41.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000525949854.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.771 kcal (2) G-P(sol) polarization free energy of solvation -32.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds