Wall clock time and date at job start Tue Mar 31 2020 06:11:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50701 * 109.46674 * 2 1 4 4 C 1.38260 * 120.00106 * 265.02244 * 3 2 1 5 5 C 1.38212 * 120.00041 * 179.97438 * 4 3 2 6 6 C 1.38258 * 120.00085 * 359.73665 * 5 4 3 7 7 C 1.38211 * 119.99784 * 0.52159 * 6 5 4 8 8 C 1.38214 * 120.00231 * 84.99924 * 3 2 1 9 9 C 1.50703 * 119.99514 * 0.02562 * 8 3 2 10 10 C 1.50697 * 109.47165 * 85.02274 * 9 8 3 11 11 O 1.21275 * 120.00324 * 359.97438 * 10 9 8 12 12 N 1.34778 * 119.99478 * 179.97438 * 10 9 8 13 13 C 1.46498 * 119.99613 * 179.97438 * 12 10 9 14 14 C 1.50699 * 109.46946 * 90.00377 * 13 12 10 15 15 H 1.07997 * 120.00324 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99942 * 179.97438 * 14 13 12 17 17 N 1.31512 * 120.00102 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99884 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47452 * 60.00085 * 18 16 14 20 20 H 1.48504 * 109.47372 * 180.02562 * 18 16 14 21 21 H 1.48507 * 109.47073 * 299.99837 * 18 16 14 22 22 C 1.46493 * 120.00451 * 0.02562 * 12 10 9 23 23 C 1.53003 * 109.47525 * 119.99730 * 22 12 10 24 24 C 1.53003 * 109.47505 * 239.99813 * 22 12 10 25 25 H 1.09005 * 109.46724 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47450 * 299.99868 * 1 2 3 27 27 H 1.08997 * 109.47200 * 60.00398 * 1 2 3 28 28 H 1.09001 * 109.47450 * 240.00132 * 2 1 3 29 29 H 1.08997 * 109.47200 * 119.99602 * 2 1 3 30 30 H 1.08001 * 119.99581 * 359.97438 * 4 3 2 31 31 H 1.08004 * 119.99477 * 180.02562 * 5 4 3 32 32 H 1.07998 * 119.99823 * 180.27809 * 6 5 4 33 33 H 1.08002 * 120.00200 * 179.76459 * 7 6 5 34 34 H 1.09007 * 109.46568 * 205.02353 * 9 8 3 35 35 H 1.09002 * 109.47211 * 325.01705 * 9 8 3 36 36 H 1.09000 * 109.47643 * 210.00365 * 13 12 10 37 37 H 1.08998 * 109.47488 * 330.00504 * 13 12 10 38 38 H 0.97000 * 120.00107 * 179.97438 * 17 16 14 39 39 H 1.09002 * 109.47512 * 359.97438 * 22 12 10 40 40 H 1.08998 * 109.47243 * 59.99998 * 23 22 12 41 41 H 1.09002 * 109.47490 * 180.02562 * 23 22 12 42 42 H 1.09008 * 109.47010 * 300.00512 * 23 22 12 43 43 H 1.09001 * 109.46616 * 59.99612 * 24 22 12 44 44 H 1.08994 * 109.47505 * 180.02562 * 24 22 12 45 45 H 1.09006 * 109.46707 * 299.99989 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.3606 2.0380 -1.1928 5 6 2.8207 3.3413 -1.1929 6 6 2.9474 4.0297 -0.0006 7 6 2.6243 3.4110 1.1923 8 6 2.1642 2.1072 1.1924 9 6 1.8064 1.4345 2.4926 10 6 2.9862 0.6384 2.9876 11 8 4.0161 0.6188 2.3475 12 7 2.8968 -0.0519 4.1418 13 6 4.0436 -0.8262 4.6228 14 6 4.9035 0.0437 5.5030 15 1 4.6236 1.0706 5.6861 16 6 6.0472 -0.4716 6.0753 17 7 6.3873 -1.7225 5.8535 18 14 7.1127 0.6066 7.1670 19 1 6.3140 1.0805 8.3256 20 1 8.2753 -0.1783 7.6545 21 1 7.5964 1.7748 6.3881 22 6 1.6526 -0.0287 4.9147 23 6 1.1085 -1.4524 5.0483 24 6 1.9272 0.5450 6.3063 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 2.2575 1.5017 -2.1246 31 1 3.0768 3.8235 -2.1248 32 1 3.3027 5.0496 -0.0011 33 1 2.7269 3.9474 2.1241 34 1 1.5420 2.1905 3.2320 35 1 0.9584 0.7679 2.3354 36 1 3.6890 -1.6837 5.1947 37 1 4.6296 -1.1742 3.7722 38 1 7.1921 -2.0849 6.2559 39 1 0.9188 0.5946 4.4036 40 1 1.8423 -2.0753 5.5597 41 1 0.1825 -1.4351 5.6231 42 1 0.9128 -1.8611 4.0569 43 1 2.3149 1.5593 6.2111 44 1 1.0016 0.5618 6.8816 45 1 2.6611 -0.0780 6.8177 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000525949854.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:07 Heat of formation + Delta-G solvation = -47.197951 kcal Electronic energy + Delta-G solvation = -23830.959874 eV Core-core repulsion = 20618.901830 eV Total energy + Delta-G solvation = -3212.058044 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.28672 -39.91056 -37.48902 -35.22249 -34.91477 -33.45263 -32.38953 -30.46336 -29.86804 -28.13310 -27.82234 -25.00809 -24.57400 -23.04421 -22.51108 -21.42375 -19.51501 -18.59566 -18.17704 -17.36403 -16.99643 -16.81117 -16.19174 -15.83600 -15.57695 -14.89972 -14.82564 -14.61051 -14.37115 -14.30412 -14.02031 -13.88385 -13.82287 -13.33151 -13.22163 -13.01259 -12.83202 -12.78945 -12.72270 -12.60594 -12.52488 -12.21801 -12.13346 -12.06690 -11.71514 -11.60233 -11.54735 -11.47810 -10.60920 -10.59289 -9.64733 -9.42484 -9.38403 -8.18905 -6.30671 0.47695 0.54936 1.34679 1.38785 1.45541 1.88751 2.32154 2.46200 2.93394 3.10763 3.70718 3.88374 3.88601 3.99786 4.10308 4.12141 4.30166 4.32368 4.36915 4.43060 4.50248 4.53026 4.66081 4.75410 4.78342 4.86030 4.88673 5.01420 5.05605 5.07153 5.10467 5.13678 5.18773 5.24841 5.28889 5.41974 5.45178 5.58806 5.62605 5.64719 5.66008 5.80029 5.92247 6.12857 6.18917 6.75522 6.87613 7.33000 7.55815 8.88169 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.016336 B = 0.005020 C = 0.004390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.609817 B = 5576.005019 C = 6376.211538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.089 4.089 3 C -0.079 4.079 4 C -0.131 4.131 5 C -0.125 4.125 6 C -0.134 4.134 7 C -0.125 4.125 8 C -0.077 4.077 9 C -0.094 4.094 10 C 0.501 3.499 11 O -0.591 6.591 12 N -0.599 5.599 13 C 0.266 3.734 14 C -0.524 4.524 15 H 0.053 0.947 16 C 0.006 3.994 17 N -0.931 5.931 18 Si 0.959 3.041 19 H -0.260 1.260 20 H -0.280 1.280 21 H -0.281 1.281 22 C 0.124 3.876 23 C -0.156 4.156 24 C -0.152 4.152 25 H 0.069 0.931 26 H 0.060 0.940 27 H 0.065 0.935 28 H 0.073 0.927 29 H 0.047 0.953 30 H 0.138 0.862 31 H 0.145 0.855 32 H 0.140 0.860 33 H 0.123 0.877 34 H 0.116 0.884 35 H 0.122 0.878 36 H 0.025 0.975 37 H -0.012 1.012 38 H 0.265 0.735 39 H 0.115 0.885 40 H 0.037 0.963 41 H 0.097 0.903 42 H 0.057 0.943 43 H 0.043 0.957 44 H 0.090 0.910 45 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.947 7.547 -8.635 20.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.126 4.126 3 C -0.079 4.079 4 C -0.149 4.149 5 C -0.142 4.142 6 C -0.152 4.152 7 C -0.143 4.143 8 C -0.078 4.078 9 C -0.133 4.133 10 C 0.290 3.710 11 O -0.471 6.471 12 N -0.330 5.330 13 C 0.145 3.855 14 C -0.563 4.563 15 H 0.071 0.929 16 C -0.192 4.192 17 N -0.571 5.571 18 Si 0.784 3.216 19 H -0.184 1.184 20 H -0.206 1.206 21 H -0.207 1.207 22 C 0.021 3.979 23 C -0.214 4.214 24 C -0.210 4.210 25 H 0.088 0.912 26 H 0.079 0.921 27 H 0.084 0.916 28 H 0.092 0.908 29 H 0.065 0.935 30 H 0.156 0.844 31 H 0.163 0.837 32 H 0.158 0.842 33 H 0.141 0.859 34 H 0.134 0.866 35 H 0.140 0.860 36 H 0.043 0.957 37 H 0.006 0.994 38 H 0.073 0.927 39 H 0.132 0.868 40 H 0.056 0.944 41 H 0.116 0.884 42 H 0.076 0.924 43 H 0.062 0.938 44 H 0.109 0.891 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -16.299 7.375 -8.888 19.976 hybrid contribution 1.474 0.095 0.734 1.649 sum -14.824 7.470 -8.155 18.495 Atomic orbital electron populations 1.21722 0.92435 1.02656 1.02699 1.20566 0.97852 0.92093 1.02098 1.19929 0.98790 0.96222 0.92997 1.21267 1.00167 0.95778 0.97660 1.21423 0.99221 0.94733 0.98866 1.21353 1.00541 1.00978 0.92348 1.21228 0.99108 0.94871 0.99062 1.19367 1.00337 0.94379 0.93692 1.20789 0.96547 1.00065 0.95884 1.21107 0.89585 0.79788 0.80543 1.90654 1.33735 1.64527 1.58221 1.48373 1.14810 1.48008 1.21800 1.18598 0.83394 0.90903 0.92616 1.21629 1.08252 0.97821 1.28607 0.92909 1.25792 0.98734 0.96353 0.98342 1.70046 1.26073 1.15219 1.45801 0.85595 0.78379 0.78465 0.79152 1.18401 1.20553 1.20657 1.21428 0.84912 0.98501 0.93032 1.22124 1.01561 0.95423 1.02323 1.22085 1.02193 1.00397 0.96333 0.91214 0.92067 0.91601 0.90820 0.93469 0.84436 0.83692 0.84219 0.85950 0.86578 0.85969 0.95715 0.99358 0.92660 0.86757 0.94410 0.88389 0.92409 0.93806 0.89116 0.93885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 9.72 71.98 0.70 -1.84 16 2 C -0.09 -2.29 5.38 29.85 0.16 -2.13 16 3 C -0.08 -2.29 5.13 -19.86 -0.10 -2.39 16 4 C -0.13 -3.33 9.68 22.27 0.22 -3.11 16 5 C -0.12 -2.95 10.05 22.27 0.22 -2.73 16 6 C -0.13 -3.41 10.05 22.27 0.22 -3.19 16 7 C -0.12 -3.66 9.68 22.27 0.22 -3.44 16 8 C -0.08 -2.38 4.37 -19.86 -0.09 -2.47 16 9 C -0.09 -2.76 3.47 29.10 0.10 -2.66 16 10 C 0.50 21.23 6.87 87.66 0.60 21.84 16 11 O -0.59 -31.71 15.61 -3.02 -0.05 -31.76 16 12 N -0.60 -25.41 2.39 -802.16 -1.91 -27.32 16 13 C 0.27 14.48 4.59 85.63 0.39 14.87 16 14 C -0.52 -30.27 7.83 25.60 0.20 -30.07 16 15 H 0.05 3.02 7.63 -2.91 -0.02 3.00 16 16 C 0.01 0.36 5.46 84.66 0.46 0.82 16 17 N -0.93 -57.29 13.29 21.45 0.28 -57.00 16 18 Si 0.96 45.74 29.54 68.60 2.03 47.77 16 19 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 20 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 21 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 22 C 0.12 3.78 3.17 44.99 0.14 3.92 16 23 C -0.16 -4.25 9.17 71.98 0.66 -3.59 16 24 C -0.15 -4.75 8.48 71.98 0.61 -4.14 16 25 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 26 H 0.06 1.06 6.80 -2.39 -0.02 1.04 16 27 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.07 1.79 8.05 -2.39 -0.02 1.77 16 29 H 0.05 1.47 6.42 -2.39 -0.02 1.46 16 30 H 0.14 2.80 8.06 -2.91 -0.02 2.78 16 31 H 0.15 2.51 8.06 -2.91 -0.02 2.49 16 32 H 0.14 2.79 8.06 -2.91 -0.02 2.77 16 33 H 0.12 3.33 8.06 -2.91 -0.02 3.30 16 34 H 0.12 2.86 7.70 -2.38 -0.02 2.84 16 35 H 0.12 2.90 5.27 -2.39 -0.01 2.89 16 36 H 0.02 1.37 6.42 -2.39 -0.02 1.36 16 37 H -0.01 -0.75 7.42 -2.39 -0.02 -0.77 16 38 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 39 H 0.11 2.60 5.77 -2.39 -0.01 2.58 16 40 H 0.04 1.26 6.66 -2.39 -0.02 1.24 16 41 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 42 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 43 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 44 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 45 H 0.04 1.67 6.93 -2.38 -0.02 1.65 16 Total: -1.00 -76.59 359.72 6.03 -70.56 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: 0.96 Total: 18.07 kcal Atomic # 6 Polarization: -25.04 SS G_CDS: 4.72 Total: -20.32 kcal Atomic # 7 Polarization: -82.69 SS G_CDS: -1.63 Total: -84.32 kcal Atomic # 8 Polarization: -31.71 SS G_CDS: -0.05 Total: -31.76 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.77 kcal Total: -76.59 6.03 -70.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000525949854.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.362 kcal (2) G-P(sol) polarization free energy of solvation -76.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds