Wall clock time and date at job start Tue Mar 31 2020 06:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35908 * 116.99903 * 2 1 4 4 C 1.38747 * 120.05703 * 0.02562 * 3 2 1 5 5 C 1.38119 * 119.94617 * 180.02562 * 4 3 2 6 6 C 1.38288 * 120.05798 * 0.02562 * 5 4 3 7 7 C 1.38247 * 120.10497 * 359.96214 * 6 5 4 8 8 C 1.50703 * 119.96582 * 179.97438 * 7 6 5 9 9 H 1.08996 * 110.29126 * 346.30764 * 8 7 6 10 10 C 1.54377 * 110.40913 * 224.11863 * 8 7 6 11 11 N 1.48562 * 104.60029 * 217.20900 * 10 8 7 12 12 C 1.46892 * 111.00263 * 159.03936 * 11 10 8 13 13 C 1.50702 * 109.47379 * 54.58277 * 12 11 10 14 14 H 1.08003 * 119.99601 * 359.72299 * 13 12 11 15 15 C 1.37870 * 120.00330 * 179.97438 * 13 12 11 16 16 N 1.31521 * 119.99836 * 359.72605 * 15 13 12 17 17 Si 1.86804 * 120.00337 * 179.72726 * 15 13 12 18 18 H 1.48492 * 109.46883 * 59.99766 * 17 15 13 19 19 H 1.48497 * 109.47373 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.46705 * 300.00111 * 17 15 13 21 21 C 1.48563 * 104.21698 * 39.48036 * 11 10 8 22 22 C 1.54265 * 110.32216 * 108.43533 * 8 7 6 23 23 C 1.53000 * 110.32367 * 0.09779 * 22 8 7 24 24 C 1.52997 * 110.40638 * 237.93381 * 22 8 7 25 25 C 1.38163 * 120.06152 * 0.26878 * 7 6 5 26 26 H 1.09003 * 109.46885 * 300.00206 * 1 2 3 27 27 H 1.09002 * 109.47063 * 59.99384 * 1 2 3 28 28 H 1.08992 * 109.46852 * 180.02562 * 1 2 3 29 29 H 1.08006 * 120.02697 * 359.97438 * 4 3 2 30 30 H 1.08001 * 119.97005 * 179.97438 * 5 4 3 31 31 H 1.08000 * 119.94662 * 179.97438 * 6 5 4 32 32 H 1.08996 * 110.41280 * 98.42687 * 10 8 7 33 33 H 1.09008 * 110.41404 * 335.98717 * 10 8 7 34 34 H 1.09008 * 109.47560 * 294.58532 * 12 11 10 35 35 H 1.08995 * 109.47374 * 174.58408 * 12 11 10 36 36 H 0.97002 * 119.99822 * 180.02562 * 16 15 13 37 37 H 1.09004 * 110.40796 * 79.29994 * 21 11 10 38 38 H 1.08997 * 110.40943 * 201.61823 * 21 11 10 39 39 H 1.08999 * 109.46606 * 183.56873 * 23 22 8 40 40 H 1.08996 * 109.47009 * 303.56543 * 23 22 8 41 41 H 1.09004 * 109.46946 * 63.56838 * 23 22 8 42 42 H 1.09002 * 109.47556 * 302.85711 * 24 22 8 43 43 H 1.09002 * 109.47060 * 62.86145 * 24 22 8 44 44 H 1.09007 * 109.46958 * 182.85654 * 24 22 8 45 45 H 1.07997 * 120.02923 * 179.74104 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2915 2.3753 0.0005 5 6 1.9209 3.6048 0.0000 6 6 3.3019 3.6759 -0.0016 7 6 4.0559 2.5172 -0.0019 8 6 5.5608 2.5983 -0.0042 9 1 5.8843 3.6103 -0.2475 10 6 6.1527 1.5894 -1.0116 11 7 7.3864 1.0850 -0.3553 12 6 7.7954 -0.2060 -0.9245 13 6 7.9355 -0.0742 -2.4192 14 1 7.7360 0.8727 -2.8989 15 6 8.3135 -1.1637 -3.1749 16 7 8.5570 -2.3166 -2.5907 17 14 8.4798 -1.0023 -5.0285 18 1 9.5023 0.0266 -5.3460 19 1 8.8945 -2.3070 -5.6038 20 1 7.1741 -0.5984 -5.6093 21 6 7.0066 0.9405 1.0736 22 6 6.1225 2.1714 1.3676 23 6 4.9818 1.7925 2.3143 24 6 6.9632 3.2969 1.9736 25 6 3.4311 1.2849 -0.0062 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 0.2128 2.3204 0.0005 30 1 1.3339 4.5114 0.0000 31 1 3.7922 4.6382 -0.0024 32 1 6.3977 2.0878 -1.9495 33 1 5.4535 0.7715 -1.1861 34 1 7.0416 -0.9593 -0.6953 35 1 8.7512 -0.5060 -0.4951 36 1 8.8232 -3.0830 -3.1224 37 1 6.4409 0.0212 1.2255 38 1 7.8946 0.9483 1.7056 39 1 5.3891 1.5545 3.2969 40 1 4.2887 2.6293 2.4013 41 1 4.4550 0.9239 1.9192 42 1 7.7638 3.5642 1.2838 43 1 6.3312 4.1670 2.1515 44 1 7.3935 2.9614 2.9172 45 1 4.0207 0.3800 -0.0106 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000528617598.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:41 Heat of formation + Delta-G solvation = -12.030897 kcal Electronic energy + Delta-G solvation = -23839.774394 eV Core-core repulsion = 20629.241307 eV Total energy + Delta-G solvation = -3210.533086 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.52640 -39.11006 -37.00424 -34.16425 -32.14427 -31.70827 -30.42618 -28.30512 -27.44397 -27.05006 -26.60011 -24.31052 -23.31720 -22.17237 -21.00993 -19.98860 -18.69825 -17.44722 -16.37662 -16.03074 -15.87202 -15.75087 -15.03849 -14.84103 -14.27467 -13.87498 -13.77636 -13.54122 -13.39359 -13.09095 -12.69713 -12.52385 -12.37663 -12.16554 -11.86107 -11.73249 -11.48506 -11.21394 -11.08722 -11.07791 -10.99215 -10.81078 -10.65454 -10.40744 -10.26043 -10.21643 -10.08355 -9.69882 -9.05609 -8.56162 -8.42420 -8.10174 -7.30420 -6.00486 -4.01902 1.41368 1.54712 3.28088 3.35553 3.39185 3.42271 3.83585 4.45229 4.71317 4.78634 4.94161 5.01879 5.03602 5.06497 5.11147 5.28841 5.34938 5.35358 5.42951 5.46359 5.57376 5.65129 5.79013 5.80040 5.83570 5.90768 6.03797 6.12146 6.20090 6.27607 6.33304 6.37797 6.45859 6.47903 6.53935 6.64174 6.67519 6.79179 6.80359 6.91103 7.24621 7.40497 7.45650 7.76936 8.01829 8.23003 8.53541 9.05276 9.62477 11.10838 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.013643 B = 0.005123 C = 0.004288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.787011 B = 5463.927141 C = 6528.865921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.317 6.317 3 C 0.125 3.875 4 C -0.219 4.219 5 C -0.083 4.083 6 C -0.157 4.157 7 C -0.015 4.015 8 C -0.055 4.055 9 H 0.085 0.915 10 C 0.056 3.944 11 N -0.507 5.507 12 C 0.183 3.817 13 C -0.512 4.512 14 H 0.062 0.938 15 C 0.057 3.943 16 N -0.897 5.897 17 Si 0.896 3.104 18 H -0.276 1.276 19 H -0.288 1.288 20 H -0.277 1.277 21 C 0.039 3.961 22 C -0.057 4.057 23 C -0.141 4.141 24 C -0.130 4.130 25 C -0.140 4.140 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.097 0.903 29 H 0.122 0.878 30 H 0.120 0.880 31 H 0.121 0.879 32 H 0.077 0.923 33 H 0.047 0.953 34 H -0.008 1.008 35 H 0.032 0.968 36 H 0.262 0.738 37 H 0.035 0.965 38 H 0.071 0.929 39 H 0.049 0.951 40 H 0.053 0.947 41 H 0.061 0.939 42 H 0.064 0.936 43 H 0.047 0.953 44 H 0.051 0.949 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.822 10.346 8.745 20.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.230 6.230 3 C 0.080 3.920 4 C -0.238 4.238 5 C -0.101 4.101 6 C -0.175 4.175 7 C -0.016 4.016 8 C -0.074 4.074 9 H 0.103 0.897 10 C -0.072 4.072 11 N -0.231 5.231 12 C 0.057 3.943 13 C -0.550 4.550 14 H 0.080 0.920 15 C -0.144 4.144 16 N -0.537 5.537 17 Si 0.724 3.276 18 H -0.201 1.201 19 H -0.213 1.213 20 H -0.203 1.203 21 C -0.090 4.090 22 C -0.058 4.058 23 C -0.199 4.199 24 C -0.187 4.187 25 C -0.158 4.158 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.116 0.884 29 H 0.140 0.860 30 H 0.138 0.862 31 H 0.139 0.861 32 H 0.095 0.905 33 H 0.065 0.935 34 H 0.010 0.990 35 H 0.051 0.949 36 H 0.071 0.929 37 H 0.054 0.946 38 H 0.089 0.911 39 H 0.068 0.932 40 H 0.072 0.928 41 H 0.080 0.920 42 H 0.083 0.917 43 H 0.066 0.934 44 H 0.070 0.930 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -14.208 10.299 8.620 19.551 hybrid contribution -0.872 -0.584 -0.976 1.433 sum -15.080 9.715 7.644 19.499 Atomic orbital electron populations 1.23007 0.78830 1.03709 1.01043 1.86113 1.21008 1.27122 1.88797 1.18996 0.92255 0.84007 0.96715 1.21116 0.99569 0.92505 1.10592 1.20822 0.94528 0.96669 0.98110 1.20936 0.93543 0.97949 1.05073 1.19620 0.95487 0.91907 0.94549 1.21201 0.89056 1.01119 0.96015 0.89664 1.23007 0.91639 0.95958 0.96597 1.65467 1.27847 1.29745 1.00082 1.19874 0.95685 0.83733 0.95016 1.21148 1.46006 0.96448 0.91448 0.91974 1.24976 0.95458 0.95236 0.98755 1.69953 1.46971 1.01000 1.35745 0.86590 0.78551 0.77170 0.85306 1.20131 1.21332 1.20289 1.23208 0.97502 0.95164 0.93111 1.21256 0.94855 0.95994 0.93698 1.22107 0.97741 1.01484 0.98543 1.21794 0.99519 0.96995 1.00377 1.20376 0.91054 0.98848 1.05540 0.92923 0.92825 0.88437 0.86020 0.86219 0.86105 0.90459 0.93526 0.98978 0.94945 0.92887 0.94633 0.91098 0.93218 0.92753 0.92018 0.91720 0.93354 0.92997 0.84948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.81 101.05 0.99 1.26 16 2 O -0.32 -4.48 10.50 -19.45 -0.20 -4.68 16 3 C 0.13 1.81 6.69 -39.22 -0.26 1.54 16 4 C -0.22 -2.65 9.04 -39.44 -0.36 -3.00 16 5 C -0.08 -0.95 10.04 -39.61 -0.40 -1.35 16 6 C -0.16 -1.98 9.59 -39.56 -0.38 -2.36 16 7 C -0.02 -0.22 3.27 -104.64 -0.34 -0.56 16 8 C -0.05 -0.86 2.92 -90.39 -0.26 -1.13 16 9 H 0.09 1.26 7.55 -51.93 -0.39 0.87 16 10 C 0.06 1.12 4.95 -2.18 -0.01 1.11 16 11 N -0.51 -11.11 5.48 -231.41 -1.27 -12.38 16 12 C 0.18 4.85 4.82 -4.98 -0.02 4.83 16 13 C -0.51 -14.55 8.58 -34.44 -0.30 -14.84 16 14 H 0.06 1.74 6.63 -52.48 -0.35 1.39 16 15 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 16 N -0.90 -27.05 13.29 55.43 0.74 -26.31 16 17 Si 0.90 21.97 29.54 -169.99 -5.02 16.94 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 19 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 C 0.04 0.71 5.58 -2.18 -0.01 0.70 16 22 C -0.06 -0.86 1.02 -153.13 -0.16 -1.02 16 23 C -0.14 -1.93 7.19 37.16 0.27 -1.67 16 24 C -0.13 -1.70 8.24 37.16 0.31 -1.40 16 25 C -0.14 -2.20 6.44 -39.43 -0.25 -2.46 16 26 H 0.05 0.41 7.66 -51.93 -0.40 0.01 16 27 H 0.05 0.44 7.66 -51.93 -0.40 0.04 16 28 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.12 1.17 6.30 -52.48 -0.33 0.84 16 30 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 31 H 0.12 1.31 8.01 -52.49 -0.42 0.89 16 32 H 0.08 1.61 7.21 -51.93 -0.37 1.24 16 33 H 0.05 1.00 5.86 -51.92 -0.30 0.70 16 34 H -0.01 -0.21 7.88 -51.92 -0.41 -0.62 16 35 H 0.03 0.93 8.14 -51.93 -0.42 0.50 16 36 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 37 H 0.04 0.68 7.45 -51.93 -0.39 0.30 16 38 H 0.07 1.26 7.86 -51.93 -0.41 0.85 16 39 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.05 0.71 7.28 -51.93 -0.38 0.33 16 41 H 0.06 0.91 5.56 -51.93 -0.29 0.62 16 42 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 43 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 44 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.13 2.34 6.52 -52.49 -0.34 1.99 16 LS Contribution 348.40 15.07 5.25 5.25 Total: -1.00 -31.00 348.40 -9.07 -40.07 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -7.27 Total: -0.10 kcal Atomic # 6 Polarization: -17.51 SS G_CDS: -1.29 Total: -18.79 kcal Atomic # 7 Polarization: -38.16 SS G_CDS: -0.53 Total: -38.69 kcal Atomic # 8 Polarization: -4.48 SS G_CDS: -0.20 Total: -4.68 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.00 -9.07 -40.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528617598.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.035 kcal (2) G-P(sol) polarization free energy of solvation -30.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds