Wall clock time and date at job start Tue Mar 31 2020 06:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35908 * 116.99903 * 2 1 4 4 C 1.38747 * 120.05703 * 0.02562 * 3 2 1 5 5 C 1.38119 * 119.94617 * 180.02562 * 4 3 2 6 6 C 1.38288 * 120.05798 * 0.02562 * 5 4 3 7 7 C 1.38247 * 120.10497 * 359.96214 * 6 5 4 8 8 C 1.50703 * 119.96582 * 179.97438 * 7 6 5 9 9 H 1.08996 * 110.29126 * 346.30764 * 8 7 6 10 10 C 1.54377 * 110.40913 * 224.11863 * 8 7 6 11 11 N 1.48562 * 104.60029 * 217.20900 * 10 8 7 12 12 C 1.46892 * 111.00263 * 159.03936 * 11 10 8 13 13 C 1.50702 * 109.47379 * 54.58277 * 12 11 10 14 14 H 1.08003 * 119.99601 * 359.72299 * 13 12 11 15 15 C 1.37870 * 120.00330 * 179.97438 * 13 12 11 16 16 N 1.31521 * 119.99836 * 359.72605 * 15 13 12 17 17 Si 1.86804 * 120.00337 * 179.72726 * 15 13 12 18 18 H 1.48492 * 109.46883 * 59.99766 * 17 15 13 19 19 H 1.48497 * 109.47373 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.46705 * 300.00111 * 17 15 13 21 21 C 1.48563 * 104.21698 * 39.48036 * 11 10 8 22 22 C 1.54265 * 110.32216 * 108.43533 * 8 7 6 23 23 C 1.53000 * 110.32367 * 0.09779 * 22 8 7 24 24 C 1.52997 * 110.40638 * 237.93381 * 22 8 7 25 25 C 1.38163 * 120.06152 * 0.26878 * 7 6 5 26 26 H 1.09003 * 109.46885 * 300.00206 * 1 2 3 27 27 H 1.09002 * 109.47063 * 59.99384 * 1 2 3 28 28 H 1.08992 * 109.46852 * 180.02562 * 1 2 3 29 29 H 1.08006 * 120.02697 * 359.97438 * 4 3 2 30 30 H 1.08001 * 119.97005 * 179.97438 * 5 4 3 31 31 H 1.08000 * 119.94662 * 179.97438 * 6 5 4 32 32 H 1.08996 * 110.41280 * 98.42687 * 10 8 7 33 33 H 1.09008 * 110.41404 * 335.98717 * 10 8 7 34 34 H 1.09008 * 109.47560 * 294.58532 * 12 11 10 35 35 H 1.08995 * 109.47374 * 174.58408 * 12 11 10 36 36 H 0.97002 * 119.99822 * 180.02562 * 16 15 13 37 37 H 1.09004 * 110.40796 * 79.29994 * 21 11 10 38 38 H 1.08997 * 110.40943 * 201.61823 * 21 11 10 39 39 H 1.08999 * 109.46606 * 183.56873 * 23 22 8 40 40 H 1.08996 * 109.47009 * 303.56543 * 23 22 8 41 41 H 1.09004 * 109.46946 * 63.56838 * 23 22 8 42 42 H 1.09002 * 109.47556 * 302.85711 * 24 22 8 43 43 H 1.09002 * 109.47060 * 62.86145 * 24 22 8 44 44 H 1.09007 * 109.46958 * 182.85654 * 24 22 8 45 45 H 1.07997 * 120.02923 * 179.74104 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2915 2.3753 0.0005 5 6 1.9209 3.6048 0.0000 6 6 3.3019 3.6759 -0.0016 7 6 4.0559 2.5172 -0.0019 8 6 5.5608 2.5983 -0.0042 9 1 5.8843 3.6103 -0.2475 10 6 6.1527 1.5894 -1.0116 11 7 7.3864 1.0850 -0.3553 12 6 7.7954 -0.2060 -0.9245 13 6 7.9355 -0.0742 -2.4192 14 1 7.7360 0.8727 -2.8989 15 6 8.3135 -1.1637 -3.1749 16 7 8.5570 -2.3166 -2.5907 17 14 8.4798 -1.0023 -5.0285 18 1 9.5023 0.0266 -5.3460 19 1 8.8945 -2.3070 -5.6038 20 1 7.1741 -0.5984 -5.6093 21 6 7.0066 0.9405 1.0736 22 6 6.1225 2.1714 1.3676 23 6 4.9818 1.7925 2.3143 24 6 6.9632 3.2969 1.9736 25 6 3.4311 1.2849 -0.0062 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 0.2128 2.3204 0.0005 30 1 1.3339 4.5114 0.0000 31 1 3.7922 4.6382 -0.0024 32 1 6.3977 2.0878 -1.9495 33 1 5.4535 0.7715 -1.1861 34 1 7.0416 -0.9593 -0.6953 35 1 8.7512 -0.5060 -0.4951 36 1 8.8232 -3.0830 -3.1224 37 1 6.4409 0.0212 1.2255 38 1 7.8946 0.9483 1.7056 39 1 5.3891 1.5545 3.2969 40 1 4.2887 2.6293 2.4013 41 1 4.4550 0.9239 1.9192 42 1 7.7638 3.5642 1.2838 43 1 6.3312 4.1670 2.1515 44 1 7.3935 2.9614 2.9172 45 1 4.0207 0.3800 -0.0106 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000528617598.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:41 Heat of formation + Delta-G solvation = -31.419309 kcal Electronic energy + Delta-G solvation = -23840.615138 eV Core-core repulsion = 20629.241307 eV Total energy + Delta-G solvation = -3211.373831 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.68142 -40.31208 -38.14140 -35.91271 -34.16239 -32.83769 -31.43294 -29.86760 -28.78123 -28.31498 -27.65704 -25.94680 -24.89104 -23.37300 -22.29695 -21.60852 -19.93898 -18.59506 -18.31527 -17.22246 -16.91649 -16.80886 -16.64858 -16.32085 -15.88901 -15.18512 -15.00930 -14.86729 -14.59021 -14.30813 -14.22791 -14.07981 -13.64169 -13.32058 -13.17483 -13.06103 -12.81415 -12.70762 -12.62576 -12.54334 -12.30679 -12.19996 -12.10651 -11.98211 -11.60449 -11.52857 -11.40963 -11.37200 -11.10678 -10.66074 -9.63882 -9.19088 -9.09082 -8.24879 -6.35479 0.39199 0.54211 1.37022 1.41035 1.48810 2.37120 2.40434 2.81475 3.08192 3.32109 3.60764 3.81972 3.88871 3.93114 4.10946 4.21172 4.29075 4.38241 4.38868 4.42405 4.51056 4.54218 4.58833 4.70123 4.71990 4.75634 4.78008 4.87043 4.93487 5.01425 5.09592 5.11464 5.13943 5.19640 5.27896 5.31794 5.37929 5.40290 5.52066 5.55302 5.60503 5.75112 5.88693 5.93748 6.20643 6.48535 6.51243 6.80135 7.34501 8.87274 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.013643 B = 0.005123 C = 0.004288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.787011 B = 5463.927141 C = 6528.865921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.349 6.349 3 C 0.110 3.890 4 C -0.213 4.213 5 C -0.074 4.074 6 C -0.155 4.155 7 C -0.026 4.026 8 C -0.043 4.043 9 H 0.104 0.896 10 C 0.057 3.943 11 N -0.512 5.512 12 C 0.199 3.801 13 C -0.529 4.529 14 H 0.064 0.936 15 C 0.002 3.998 16 N -0.934 5.934 17 Si 0.969 3.031 18 H -0.264 1.264 19 H -0.280 1.280 20 H -0.269 1.269 21 C 0.036 3.964 22 C -0.049 4.049 23 C -0.132 4.132 24 C -0.124 4.124 25 C -0.164 4.164 26 H 0.070 0.930 27 H 0.065 0.935 28 H 0.111 0.889 29 H 0.151 0.849 30 H 0.158 0.842 31 H 0.146 0.854 32 H 0.064 0.936 33 H 0.020 0.980 34 H -0.042 1.042 35 H 0.003 0.997 36 H 0.265 0.735 37 H 0.015 0.985 38 H 0.076 0.924 39 H 0.061 0.939 40 H 0.070 0.930 41 H 0.041 0.959 42 H 0.052 0.948 43 H 0.074 0.926 44 H 0.062 0.938 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.824 13.541 8.755 23.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.264 6.264 3 C 0.065 3.935 4 C -0.231 4.231 5 C -0.092 4.092 6 C -0.173 4.173 7 C -0.026 4.026 8 C -0.062 4.062 9 H 0.122 0.878 10 C -0.071 4.071 11 N -0.236 5.236 12 C 0.072 3.928 13 C -0.567 4.567 14 H 0.082 0.918 15 C -0.196 4.196 16 N -0.574 5.574 17 Si 0.793 3.207 18 H -0.189 1.189 19 H -0.206 1.206 20 H -0.194 1.194 21 C -0.093 4.093 22 C -0.050 4.050 23 C -0.189 4.189 24 C -0.182 4.182 25 C -0.183 4.183 26 H 0.089 0.911 27 H 0.084 0.916 28 H 0.130 0.870 29 H 0.168 0.832 30 H 0.176 0.824 31 H 0.164 0.836 32 H 0.083 0.917 33 H 0.039 0.961 34 H -0.025 1.025 35 H 0.022 0.978 36 H 0.074 0.926 37 H 0.034 0.966 38 H 0.094 0.906 39 H 0.080 0.920 40 H 0.089 0.911 41 H 0.060 0.940 42 H 0.071 0.929 43 H 0.093 0.907 44 H 0.081 0.919 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -16.222 13.510 8.646 22.813 hybrid contribution -0.328 -1.634 -0.939 1.913 sum -16.550 11.876 7.708 21.779 Atomic orbital electron populations 1.23318 0.76377 1.05272 1.02438 1.86073 1.23704 1.27659 1.88923 1.19148 0.91944 0.85115 0.97250 1.21463 1.00937 0.91737 1.09009 1.21271 0.94290 0.97735 0.95907 1.21210 0.94209 0.97834 1.03998 1.19494 0.94609 0.92402 0.96145 1.21100 0.90149 1.00223 0.94690 0.87793 1.22952 0.90375 0.96233 0.97527 1.65355 1.29444 1.26689 1.02077 1.19500 0.93235 0.85225 0.94821 1.21453 1.46173 0.96756 0.92366 0.91780 1.25953 0.94749 0.94682 1.04237 1.70094 1.47617 1.01860 1.37861 0.85435 0.78985 0.77618 0.78622 1.18895 1.20564 1.19417 1.23316 0.98328 0.96581 0.91026 1.21240 0.94873 0.94841 0.94040 1.22004 0.97206 1.01266 0.98449 1.21760 0.99205 0.96869 1.00318 1.20208 0.91953 0.98052 1.08068 0.91128 0.91611 0.87046 0.83171 0.82399 0.83585 0.91736 0.96142 1.02484 0.97842 0.92619 0.96623 0.90574 0.91969 0.91150 0.94023 0.92861 0.90658 0.91901 0.88898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 9.81 113.37 1.11 1.45 16 2 O -0.35 -10.03 10.50 -92.51 -0.97 -11.00 16 3 C 0.11 3.16 6.69 22.51 0.15 3.31 16 4 C -0.21 -4.52 9.04 22.36 0.20 -4.32 16 5 C -0.07 -1.39 10.04 22.25 0.22 -1.16 16 6 C -0.15 -3.38 9.59 22.28 0.21 -3.16 16 7 C -0.03 -0.74 3.27 -19.88 -0.06 -0.81 16 8 C -0.04 -1.33 2.92 -10.64 -0.03 -1.36 16 9 H 0.10 2.85 7.55 -2.39 -0.02 2.83 16 10 C 0.06 2.41 4.95 86.45 0.43 2.84 16 11 N -0.51 -23.79 5.48 -886.05 -4.86 -28.65 16 12 C 0.20 11.40 4.82 85.56 0.41 11.81 16 13 C -0.53 -31.50 8.58 25.60 0.22 -31.28 16 14 H 0.06 3.70 6.63 -2.91 -0.02 3.68 16 15 C 0.00 0.12 5.46 84.65 0.46 0.58 16 16 N -0.93 -58.56 13.29 21.45 0.28 -58.28 16 17 Si 0.97 45.85 29.54 68.60 2.03 47.88 16 18 H -0.26 -11.96 7.11 99.48 0.71 -11.25 16 19 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 20 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 21 C 0.04 1.39 5.58 86.45 0.48 1.87 16 22 C -0.05 -1.46 1.02 -51.29 -0.05 -1.51 16 23 C -0.13 -3.51 7.19 71.98 0.52 -2.99 16 24 C -0.12 -2.98 8.24 71.98 0.59 -2.38 16 25 C -0.16 -5.40 6.44 22.37 0.14 -5.25 16 26 H 0.07 0.92 7.66 -2.39 -0.02 0.90 16 27 H 0.07 0.93 7.66 -2.39 -0.02 0.92 16 28 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.15 2.26 6.30 -2.91 -0.02 2.24 16 30 H 0.16 1.79 8.06 -2.91 -0.02 1.77 16 31 H 0.15 2.45 8.01 -2.91 -0.02 2.43 16 32 H 0.06 2.81 7.21 -2.39 -0.02 2.79 16 33 H 0.02 0.96 5.86 -2.38 -0.01 0.95 16 34 H -0.04 -2.66 7.88 -2.38 -0.02 -2.68 16 35 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 36 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 37 H 0.02 0.66 7.45 -2.39 -0.02 0.64 16 38 H 0.08 2.82 7.86 -2.39 -0.02 2.80 16 39 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.07 1.66 7.28 -2.39 -0.02 1.64 16 41 H 0.04 1.28 5.56 -2.39 -0.01 1.27 16 42 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 43 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 44 H 0.06 1.37 8.14 -2.38 -0.02 1.36 16 45 H 0.09 3.70 6.52 -2.91 -0.02 3.68 16 Total: -1.00 -71.90 348.40 2.46 -69.45 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: 0.96 Total: 12.97 kcal Atomic # 6 Polarization: -37.38 SS G_CDS: 5.01 Total: -32.36 kcal Atomic # 7 Polarization: -82.36 SS G_CDS: -4.57 Total: -86.93 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: -0.97 Total: -11.00 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.88 kcal Total: -71.90 2.46 -69.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528617598.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.028 kcal (2) G-P(sol) polarization free energy of solvation -71.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds