Wall clock time and date at job start Tue Mar 31 2020 06:00:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35903 * 116.99970 * 2 1 4 4 C 1.38758 * 120.05167 * 0.02562 * 3 2 1 5 5 C 1.38125 * 119.93976 * 180.02562 * 4 3 2 6 6 C 1.38287 * 120.05710 * 359.97359 * 5 4 3 7 7 C 1.38243 * 120.11363 * 0.02562 * 6 5 4 8 8 C 1.50702 * 119.97303 * 179.97438 * 7 6 5 9 9 H 1.09000 * 110.36511 * 193.84366 * 8 7 6 10 10 C 1.54376 * 110.32325 * 316.02264 * 8 7 6 11 11 N 1.48562 * 104.59464 * 142.74953 * 10 8 7 12 12 C 1.46891 * 111.00120 * 200.96088 * 11 10 8 13 13 C 1.50700 * 109.47235 * 175.55673 * 12 11 10 14 14 H 1.08002 * 120.00018 * 355.62521 * 13 12 11 15 15 C 1.37877 * 120.00208 * 175.61706 * 13 12 11 16 16 N 1.31511 * 119.99939 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00012 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47243 * 180.02562 * 17 15 13 19 19 H 1.48500 * 109.47267 * 300.00164 * 17 15 13 20 20 H 1.48499 * 109.47120 * 60.00113 * 17 15 13 21 21 C 1.48559 * 104.22044 * 320.51940 * 11 10 8 22 22 C 1.54258 * 110.32356 * 71.66701 * 8 7 6 23 23 C 1.53001 * 110.32706 * 359.97438 * 22 8 7 24 24 C 1.52996 * 110.32926 * 122.10552 * 22 8 7 25 25 C 1.38166 * 120.05220 * 0.27099 * 7 6 5 26 26 H 1.09001 * 109.47050 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47658 * 299.99919 * 1 2 3 28 28 H 1.09003 * 109.47003 * 59.99726 * 1 2 3 29 29 H 1.07995 * 120.03038 * 0.04150 * 4 3 2 30 30 H 1.07998 * 119.97029 * 179.97438 * 5 4 3 31 31 H 1.08004 * 119.94827 * 180.02562 * 6 5 4 32 32 H 1.09004 * 110.40895 * 23.97397 * 10 8 7 33 33 H 1.09000 * 110.51112 * 261.57926 * 10 8 7 34 34 H 1.09006 * 109.47180 * 55.55888 * 12 11 10 35 35 H 1.08993 * 109.47502 * 295.55699 * 12 11 10 36 36 H 0.97002 * 119.99959 * 179.97438 * 16 15 13 37 37 H 1.09004 * 110.41121 * 158.26059 * 21 11 10 38 38 H 1.08998 * 110.41432 * 280.69873 * 21 11 10 39 39 H 1.08996 * 109.46979 * 53.32163 * 23 22 8 40 40 H 1.08996 * 109.46867 * 173.32745 * 23 22 8 41 41 H 1.09004 * 109.46741 * 293.33005 * 23 22 8 42 42 H 1.09008 * 109.47073 * 59.99484 * 24 22 8 43 43 H 1.08993 * 109.47578 * 179.97438 * 24 22 8 44 44 H 1.09002 * 109.46927 * 300.00029 * 24 22 8 45 45 H 1.08007 * 120.02526 * 179.74716 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2913 2.3753 0.0005 5 6 1.9207 3.6048 0.0000 6 6 3.3018 3.6758 -0.0005 7 6 4.0559 2.5172 -0.0010 8 6 5.5607 2.5984 -0.0022 9 1 5.9927 1.6280 -0.2470 10 6 6.0393 3.6674 -1.0078 11 7 7.2105 4.3023 -0.3503 12 6 7.4763 5.6310 -0.9173 13 6 8.5984 6.2872 -0.1547 14 1 9.0195 5.7999 0.7122 15 6 9.0874 7.5097 -0.5639 16 7 8.5743 8.1033 -1.6193 17 14 10.4787 8.3228 0.3810 18 1 10.8183 9.6201 -0.2568 19 1 10.0530 8.5580 1.7841 20 1 11.6704 7.4368 0.3671 21 6 6.8169 4.4022 1.0787 22 6 6.0723 3.0816 1.3705 23 6 4.8970 3.3328 2.3173 24 6 7.0292 2.0515 1.9738 25 6 3.4310 1.2849 -0.0067 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 0.2127 2.3203 0.0016 30 1 1.3338 4.5114 0.0000 31 1 3.7922 4.6381 -0.0005 32 1 5.2550 4.4043 -1.1812 33 1 6.3369 3.2019 -1.9474 34 1 6.5784 6.2445 -0.8420 35 1 7.7599 5.5290 -1.9647 36 1 8.9181 8.9636 -1.9069 37 1 7.7005 4.4881 1.7113 38 1 6.1544 5.2541 1.2320 39 1 4.2681 2.4436 2.3597 40 1 5.2754 3.5582 3.3143 41 1 4.3101 4.1757 1.9522 42 1 7.8797 1.9112 1.3066 43 1 7.3821 2.4067 2.9420 44 1 6.5079 1.1029 2.1024 45 1 4.0207 0.3800 -0.0112 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000528617605.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:44 Heat of formation + Delta-G solvation = -12.880309 kcal Electronic energy + Delta-G solvation = -23556.076134 eV Core-core repulsion = 20345.506215 eV Total energy + Delta-G solvation = -3210.569920 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.56241 -39.23680 -37.01628 -34.12223 -32.23811 -31.72248 -30.53803 -28.50150 -27.47904 -26.86212 -26.34951 -24.90854 -22.83556 -22.45307 -21.03085 -20.06721 -18.76295 -17.40845 -16.30645 -16.13249 -16.04794 -15.86604 -15.01601 -14.93183 -14.24615 -14.02177 -13.67742 -13.60463 -13.46138 -13.08833 -12.70508 -12.50262 -12.46879 -12.14863 -11.99259 -11.73965 -11.58792 -11.30615 -11.14618 -11.00992 -10.93609 -10.83075 -10.64625 -10.49375 -10.34774 -10.18418 -9.95750 -9.72126 -9.13457 -8.69150 -8.43937 -8.12695 -7.33267 -6.02294 -4.03581 1.35691 1.48886 3.14895 3.33987 3.37935 3.40971 3.78015 4.43374 4.67724 4.74590 4.91948 4.92716 4.97852 5.00511 5.10441 5.22221 5.29452 5.32558 5.41984 5.45992 5.50422 5.53704 5.75100 5.81185 5.86958 5.93759 6.01851 6.09384 6.23323 6.28978 6.33012 6.36787 6.39696 6.48529 6.51423 6.54245 6.70324 6.76192 6.81208 6.84056 7.22752 7.33106 7.34686 7.75806 8.00988 8.21632 8.51679 9.03461 9.60630 11.09022 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.029580 B = 0.003631 C = 0.003449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.358145 B = 7709.960448 C = 8116.413176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.320 6.320 3 C 0.123 3.877 4 C -0.218 4.218 5 C -0.081 4.081 6 C -0.145 4.145 7 C -0.015 4.015 8 C -0.049 4.049 9 H 0.085 0.915 10 C 0.036 3.964 11 N -0.507 5.507 12 C 0.183 3.817 13 C -0.509 4.509 14 H 0.062 0.938 15 C 0.056 3.944 16 N -0.898 5.898 17 Si 0.897 3.103 18 H -0.288 1.288 19 H -0.277 1.277 20 H -0.276 1.276 21 C 0.059 3.941 22 C -0.063 4.063 23 C -0.140 4.140 24 C -0.130 4.130 25 C -0.152 4.152 26 H 0.097 0.903 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.122 0.878 30 H 0.122 0.878 31 H 0.126 0.874 32 H 0.042 0.958 33 H 0.071 0.929 34 H -0.011 1.011 35 H 0.034 0.966 36 H 0.262 0.738 37 H 0.077 0.923 38 H 0.038 0.962 39 H 0.053 0.947 40 H 0.050 0.950 41 H 0.059 0.941 42 H 0.064 0.936 43 H 0.052 0.948 44 H 0.046 0.954 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.441 -13.782 4.983 21.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.234 6.234 3 C 0.078 3.922 4 C -0.237 4.237 5 C -0.099 4.099 6 C -0.163 4.163 7 C -0.016 4.016 8 C -0.068 4.068 9 H 0.103 0.897 10 C -0.093 4.093 11 N -0.231 5.231 12 C 0.058 3.942 13 C -0.548 4.548 14 H 0.080 0.920 15 C -0.145 4.145 16 N -0.538 5.538 17 Si 0.725 3.275 18 H -0.214 1.214 19 H -0.203 1.203 20 H -0.201 1.201 21 C -0.069 4.069 22 C -0.063 4.063 23 C -0.197 4.197 24 C -0.187 4.187 25 C -0.170 4.170 26 H 0.115 0.885 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.140 0.860 30 H 0.140 0.860 31 H 0.144 0.856 32 H 0.060 0.940 33 H 0.090 0.910 34 H 0.006 0.994 35 H 0.052 0.948 36 H 0.071 0.929 37 H 0.095 0.905 38 H 0.056 0.944 39 H 0.072 0.928 40 H 0.069 0.931 41 H 0.078 0.922 42 H 0.083 0.917 43 H 0.071 0.929 44 H 0.066 0.934 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -14.833 -14.100 4.780 21.016 hybrid contribution -0.335 1.292 0.438 1.405 sum -15.168 -12.808 5.218 20.526 Atomic orbital electron populations 1.23004 0.78758 1.03605 1.01245 1.86053 1.21084 1.27263 1.89013 1.18961 0.92242 0.83920 0.97095 1.21125 0.99594 0.92479 1.10494 1.20893 0.94554 0.96837 0.97591 1.21049 0.93483 0.98661 1.03158 1.19622 0.95505 0.91893 0.94533 1.21094 0.89292 1.00397 0.96020 0.89682 1.23207 0.93475 0.95528 0.97049 1.65476 1.31887 1.24237 1.01470 1.19865 0.95541 0.82627 0.96188 1.21121 1.17751 1.03172 1.12749 0.92008 1.24981 0.97080 0.97253 0.95193 1.69947 1.42406 1.16643 1.24769 0.86575 0.82539 0.78490 0.79905 1.21356 1.20289 1.20134 1.23000 0.98134 0.93530 0.92227 1.21353 0.95058 0.96536 0.93371 1.22090 0.97525 1.01436 0.98683 1.21794 0.99064 0.97354 1.00524 1.20272 0.91074 0.98154 1.07515 0.88502 0.92818 0.92794 0.85987 0.86005 0.85577 0.94015 0.91016 0.99355 0.94758 0.92874 0.90474 0.94415 0.92829 0.93097 0.92174 0.91699 0.92890 0.93449 0.85470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.21 16 2 O -0.32 -3.72 10.50 -19.44 -0.20 -3.92 16 3 C 0.12 1.54 6.69 -39.22 -0.26 1.28 16 4 C -0.22 -2.51 9.04 -39.43 -0.36 -2.86 16 5 C -0.08 -0.98 10.04 -39.60 -0.40 -1.37 16 6 C -0.15 -2.01 6.54 -39.56 -0.26 -2.27 16 7 C -0.02 -0.21 3.21 -104.65 -0.34 -0.55 16 8 C -0.05 -0.74 2.92 -90.39 -0.26 -1.01 16 9 H 0.08 1.23 7.55 -51.93 -0.39 0.83 16 10 C 0.04 0.65 5.90 -2.18 -0.01 0.64 16 11 N -0.51 -10.96 5.44 -231.41 -1.26 -12.22 16 12 C 0.18 4.81 4.68 -4.98 -0.02 4.78 16 13 C -0.51 -14.34 8.70 -34.44 -0.30 -14.64 16 14 H 0.06 1.71 6.84 -52.49 -0.36 1.35 16 15 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 16 N -0.90 -26.81 13.29 55.43 0.74 -26.07 16 17 Si 0.90 21.73 29.54 -169.99 -5.02 16.70 16 18 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 C 0.06 1.15 4.79 -2.18 -0.01 1.14 16 22 C -0.06 -0.96 1.02 -153.12 -0.16 -1.11 16 23 C -0.14 -1.94 7.21 37.16 0.27 -1.67 16 24 C -0.13 -1.81 8.23 37.16 0.31 -1.50 16 25 C -0.15 -2.01 9.49 -39.43 -0.37 -2.38 16 26 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.05 0.35 7.66 -51.93 -0.40 -0.05 16 28 H 0.05 0.35 7.66 -51.93 -0.40 -0.04 16 29 H 0.12 1.11 6.30 -52.49 -0.33 0.77 16 30 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 31 H 0.13 1.88 6.51 -52.48 -0.34 1.54 16 32 H 0.04 0.78 5.77 -51.93 -0.30 0.48 16 33 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 34 H -0.01 -0.31 7.97 -51.93 -0.41 -0.73 16 35 H 0.03 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 37 H 0.08 1.56 7.08 -51.93 -0.37 1.20 16 38 H 0.04 0.77 7.55 -51.93 -0.39 0.38 16 39 H 0.05 0.71 7.07 -51.93 -0.37 0.35 16 40 H 0.05 0.66 8.13 -51.93 -0.42 0.24 16 41 H 0.06 0.86 5.70 -51.93 -0.30 0.56 16 42 H 0.06 0.97 8.14 -51.92 -0.42 0.55 16 43 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 44 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.13 1.57 8.01 -52.48 -0.42 1.15 16 LS Contribution 348.85 15.07 5.26 5.26 Total: -1.00 -30.51 348.85 -9.07 -39.58 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -7.29 Total: -0.52 kcal Atomic # 6 Polarization: -17.52 SS G_CDS: -1.28 Total: -18.81 kcal Atomic # 7 Polarization: -37.77 SS G_CDS: -0.52 Total: -38.29 kcal Atomic # 8 Polarization: -3.72 SS G_CDS: -0.20 Total: -3.92 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.51 -9.07 -39.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528617605.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.699 kcal (2) G-P(sol) polarization free energy of solvation -30.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds