Wall clock time and date at job start Tue Mar 31 2020 06:00:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35903 * 116.99970 * 2 1 4 4 C 1.38758 * 120.05167 * 0.02562 * 3 2 1 5 5 C 1.38125 * 119.93976 * 180.02562 * 4 3 2 6 6 C 1.38287 * 120.05710 * 359.97359 * 5 4 3 7 7 C 1.38243 * 120.11363 * 0.02562 * 6 5 4 8 8 C 1.50702 * 119.97303 * 179.97438 * 7 6 5 9 9 H 1.09000 * 110.36511 * 193.84366 * 8 7 6 10 10 C 1.54376 * 110.32325 * 316.02264 * 8 7 6 11 11 N 1.48562 * 104.59464 * 142.74953 * 10 8 7 12 12 C 1.46891 * 111.00120 * 200.96088 * 11 10 8 13 13 C 1.50700 * 109.47235 * 175.55673 * 12 11 10 14 14 H 1.08002 * 120.00018 * 355.62521 * 13 12 11 15 15 C 1.37877 * 120.00208 * 175.61706 * 13 12 11 16 16 N 1.31511 * 119.99939 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00012 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47243 * 180.02562 * 17 15 13 19 19 H 1.48500 * 109.47267 * 300.00164 * 17 15 13 20 20 H 1.48499 * 109.47120 * 60.00113 * 17 15 13 21 21 C 1.48559 * 104.22044 * 320.51940 * 11 10 8 22 22 C 1.54258 * 110.32356 * 71.66701 * 8 7 6 23 23 C 1.53001 * 110.32706 * 359.97438 * 22 8 7 24 24 C 1.52996 * 110.32926 * 122.10552 * 22 8 7 25 25 C 1.38166 * 120.05220 * 0.27099 * 7 6 5 26 26 H 1.09001 * 109.47050 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47658 * 299.99919 * 1 2 3 28 28 H 1.09003 * 109.47003 * 59.99726 * 1 2 3 29 29 H 1.07995 * 120.03038 * 0.04150 * 4 3 2 30 30 H 1.07998 * 119.97029 * 179.97438 * 5 4 3 31 31 H 1.08004 * 119.94827 * 180.02562 * 6 5 4 32 32 H 1.09004 * 110.40895 * 23.97397 * 10 8 7 33 33 H 1.09000 * 110.51112 * 261.57926 * 10 8 7 34 34 H 1.09006 * 109.47180 * 55.55888 * 12 11 10 35 35 H 1.08993 * 109.47502 * 295.55699 * 12 11 10 36 36 H 0.97002 * 119.99959 * 179.97438 * 16 15 13 37 37 H 1.09004 * 110.41121 * 158.26059 * 21 11 10 38 38 H 1.08998 * 110.41432 * 280.69873 * 21 11 10 39 39 H 1.08996 * 109.46979 * 53.32163 * 23 22 8 40 40 H 1.08996 * 109.46867 * 173.32745 * 23 22 8 41 41 H 1.09004 * 109.46741 * 293.33005 * 23 22 8 42 42 H 1.09008 * 109.47073 * 59.99484 * 24 22 8 43 43 H 1.08993 * 109.47578 * 179.97438 * 24 22 8 44 44 H 1.09002 * 109.46927 * 300.00029 * 24 22 8 45 45 H 1.08007 * 120.02526 * 179.74716 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2913 2.3753 0.0005 5 6 1.9207 3.6048 0.0000 6 6 3.3018 3.6758 -0.0005 7 6 4.0559 2.5172 -0.0010 8 6 5.5607 2.5984 -0.0022 9 1 5.9927 1.6280 -0.2470 10 6 6.0393 3.6674 -1.0078 11 7 7.2105 4.3023 -0.3503 12 6 7.4763 5.6310 -0.9173 13 6 8.5984 6.2872 -0.1547 14 1 9.0195 5.7999 0.7122 15 6 9.0874 7.5097 -0.5639 16 7 8.5743 8.1033 -1.6193 17 14 10.4787 8.3228 0.3810 18 1 10.8183 9.6201 -0.2568 19 1 10.0530 8.5580 1.7841 20 1 11.6704 7.4368 0.3671 21 6 6.8169 4.4022 1.0787 22 6 6.0723 3.0816 1.3705 23 6 4.8970 3.3328 2.3173 24 6 7.0292 2.0515 1.9738 25 6 3.4310 1.2849 -0.0067 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 0.2127 2.3203 0.0016 30 1 1.3338 4.5114 0.0000 31 1 3.7922 4.6381 -0.0005 32 1 5.2550 4.4043 -1.1812 33 1 6.3369 3.2019 -1.9474 34 1 6.5784 6.2445 -0.8420 35 1 7.7599 5.5290 -1.9647 36 1 8.9181 8.9636 -1.9069 37 1 7.7005 4.4881 1.7113 38 1 6.1544 5.2541 1.2320 39 1 4.2681 2.4436 2.3597 40 1 5.2754 3.5582 3.3143 41 1 4.3101 4.1757 1.9522 42 1 7.8797 1.9112 1.3066 43 1 7.3821 2.4067 2.9420 44 1 6.5079 1.1029 2.1024 45 1 4.0207 0.3800 -0.0112 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000528617605.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:43 Heat of formation + Delta-G solvation = -31.199504 kcal Electronic energy + Delta-G solvation = -23556.870514 eV Core-core repulsion = 20345.506215 eV Total energy + Delta-G solvation = -3211.364300 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.66638 -40.34699 -38.10922 -35.83812 -34.20204 -32.84023 -31.51641 -30.03143 -28.46428 -27.96792 -27.77990 -26.54458 -24.36314 -23.49561 -22.41724 -21.57184 -19.96307 -18.66887 -18.03090 -17.21933 -17.12619 -16.80141 -16.60218 -16.24001 -15.87196 -15.25066 -15.11264 -14.79674 -14.49207 -14.33264 -14.17307 -13.99686 -13.54388 -13.52048 -13.22684 -13.00401 -12.96161 -12.72385 -12.67607 -12.43029 -12.39994 -12.19470 -11.93163 -11.82403 -11.71540 -11.50778 -11.37495 -11.31493 -11.21444 -10.63552 -9.70380 -9.20051 -9.04374 -8.22760 -6.32997 0.37368 0.50471 1.39533 1.43127 1.50959 2.37688 2.39912 2.78371 3.09758 3.35167 3.61425 3.80327 3.87869 3.93959 4.11630 4.20729 4.29083 4.33838 4.40677 4.42869 4.43063 4.51754 4.59274 4.74385 4.76816 4.79610 4.84735 4.87239 4.92541 4.99683 5.06679 5.11880 5.15229 5.18424 5.26516 5.30513 5.33925 5.40240 5.51147 5.54498 5.61613 5.74858 5.81961 5.95915 6.25893 6.49518 6.50487 6.82392 7.36807 8.89147 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.029580 B = 0.003631 C = 0.003449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.358145 B = 7709.960448 C = 8116.413176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.335 6.335 3 C 0.120 3.880 4 C -0.212 4.212 5 C -0.081 4.081 6 C -0.161 4.161 7 C -0.022 4.022 8 C -0.038 4.038 9 H 0.097 0.903 10 C 0.034 3.966 11 N -0.516 5.516 12 C 0.200 3.800 13 C -0.527 4.527 14 H 0.063 0.937 15 C 0.002 3.998 16 N -0.934 5.934 17 Si 0.969 3.031 18 H -0.282 1.282 19 H -0.266 1.266 20 H -0.268 1.268 21 C 0.062 3.938 22 C -0.055 4.055 23 C -0.132 4.132 24 C -0.126 4.126 25 C -0.159 4.159 26 H 0.118 0.882 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.150 0.850 30 H 0.140 0.860 31 H 0.105 0.895 32 H 0.033 0.967 33 H 0.071 0.929 34 H -0.039 1.039 35 H 0.003 0.997 36 H 0.265 0.735 37 H 0.065 0.935 38 H 0.019 0.981 39 H 0.065 0.935 40 H 0.059 0.941 41 H 0.050 0.950 42 H 0.051 0.949 43 H 0.060 0.940 44 H 0.070 0.930 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.608 -15.338 6.488 23.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.249 6.249 3 C 0.075 3.925 4 C -0.231 4.231 5 C -0.099 4.099 6 C -0.179 4.179 7 C -0.023 4.023 8 C -0.057 4.057 9 H 0.115 0.885 10 C -0.094 4.094 11 N -0.239 5.239 12 C 0.073 3.927 13 C -0.565 4.565 14 H 0.081 0.919 15 C -0.196 4.196 16 N -0.574 5.574 17 Si 0.794 3.206 18 H -0.207 1.207 19 H -0.191 1.191 20 H -0.192 1.192 21 C -0.067 4.067 22 C -0.055 4.055 23 C -0.189 4.189 24 C -0.184 4.184 25 C -0.177 4.177 26 H 0.136 0.864 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.168 0.832 30 H 0.158 0.842 31 H 0.123 0.877 32 H 0.051 0.949 33 H 0.090 0.910 34 H -0.022 1.022 35 H 0.021 0.979 36 H 0.074 0.926 37 H 0.083 0.917 38 H 0.037 0.963 39 H 0.084 0.916 40 H 0.078 0.922 41 H 0.069 0.931 42 H 0.070 0.930 43 H 0.079 0.921 44 H 0.089 0.911 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -16.016 -15.682 6.294 23.282 hybrid contribution -0.099 1.725 -0.085 1.730 sum -16.115 -13.957 6.209 22.204 Atomic orbital electron populations 1.23330 0.76542 1.05493 1.02205 1.86042 1.23388 1.26713 1.88740 1.19069 0.92208 0.84756 0.96481 1.21412 1.01016 0.91648 1.08976 1.21112 0.93862 0.98131 0.96812 1.20967 0.94518 0.97767 1.04657 1.19407 0.94406 0.92428 0.96010 1.20978 0.90615 0.99418 0.94640 0.88497 1.23256 0.92057 0.96122 0.97975 1.65355 1.34171 1.21363 1.03039 1.19489 0.94010 0.84581 0.94576 1.21432 1.18298 1.03778 1.13008 0.91884 1.25933 0.99764 0.97819 0.96084 1.70083 1.43927 1.17114 1.26324 0.85436 0.79049 0.77441 0.78720 1.20722 1.19130 1.19250 1.22984 0.97704 0.95513 0.90463 1.21305 0.95562 0.94534 0.94124 1.22002 0.96764 1.01627 0.98496 1.21766 0.98356 0.97863 1.00371 1.20341 0.91863 0.97879 1.07636 0.86361 0.91691 0.91888 0.83225 0.84180 0.87708 0.94893 0.91028 1.02154 0.97929 0.92629 0.91671 0.96284 0.91636 0.92178 0.93066 0.93012 0.92120 0.91063 0.84698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 113.37 1.11 1.32 16 2 O -0.33 -6.85 10.50 -92.46 -0.97 -7.82 16 3 C 0.12 2.74 6.69 22.51 0.15 2.89 16 4 C -0.21 -4.31 9.04 22.37 0.20 -4.10 16 5 C -0.08 -1.84 10.04 22.25 0.22 -1.62 16 6 C -0.16 -4.44 6.54 22.28 0.15 -4.29 16 7 C -0.02 -0.60 3.21 -19.88 -0.06 -0.66 16 8 C -0.04 -1.13 2.92 -10.65 -0.03 -1.16 16 9 H 0.10 2.68 7.55 -2.39 -0.02 2.66 16 10 C 0.03 1.29 5.90 86.45 0.51 1.80 16 11 N -0.52 -23.35 5.44 -886.05 -4.82 -28.16 16 12 C 0.20 11.13 4.68 85.56 0.40 11.53 16 13 C -0.53 -30.66 8.70 25.60 0.22 -30.44 16 14 H 0.06 3.57 6.84 -2.91 -0.02 3.55 16 15 C 0.00 0.12 5.46 84.66 0.46 0.59 16 16 N -0.93 -57.39 13.29 21.45 0.28 -57.11 16 17 Si 0.97 44.95 29.54 68.60 2.03 46.98 16 18 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 19 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 20 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 21 C 0.06 2.45 4.79 86.45 0.41 2.87 16 22 C -0.05 -1.65 1.02 -51.28 -0.05 -1.70 16 23 C -0.13 -3.49 7.21 71.98 0.52 -2.97 16 24 C -0.13 -3.31 8.23 71.98 0.59 -2.71 16 25 C -0.16 -3.93 9.49 22.37 0.21 -3.72 16 26 H 0.12 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.06 0.61 7.66 -2.39 -0.02 0.59 16 28 H 0.06 0.62 7.66 -2.39 -0.02 0.60 16 29 H 0.15 2.15 6.30 -2.91 -0.02 2.13 16 30 H 0.14 2.58 8.06 -2.91 -0.02 2.56 16 31 H 0.10 3.31 6.51 -2.91 -0.02 3.29 16 32 H 0.03 1.31 5.77 -2.38 -0.01 1.30 16 33 H 0.07 2.66 8.14 -2.39 -0.02 2.65 16 34 H -0.04 -2.34 7.97 -2.38 -0.02 -2.36 16 35 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 36 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 37 H 0.06 2.71 7.08 -2.39 -0.02 2.70 16 38 H 0.02 0.82 7.55 -2.39 -0.02 0.80 16 39 H 0.06 1.60 7.07 -2.39 -0.02 1.59 16 40 H 0.06 1.47 8.13 -2.39 -0.02 1.45 16 41 H 0.05 1.45 5.70 -2.38 -0.01 1.44 16 42 H 0.05 1.49 8.14 -2.38 -0.02 1.47 16 43 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 44 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 45 H 0.14 3.06 8.01 -2.91 -0.02 3.03 16 Total: -1.00 -67.53 348.85 2.50 -65.03 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: 0.96 Total: 13.47 kcal Atomic # 6 Polarization: -37.40 SS G_CDS: 5.02 Total: -32.38 kcal Atomic # 7 Polarization: -80.74 SS G_CDS: -4.53 Total: -85.27 kcal Atomic # 8 Polarization: -6.85 SS G_CDS: -0.97 Total: -7.82 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -67.53 2.50 -65.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528617605.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.835 kcal (2) G-P(sol) polarization free energy of solvation -67.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds