Wall clock time and date at job start Tue Mar 31 2020 06:33:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47012 * 2 1 4 4 C 1.53005 * 109.46904 * 240.00559 * 2 1 3 5 5 C 1.50694 * 109.47582 * 120.00146 * 2 1 3 6 6 C 1.38243 * 119.99991 * 59.99662 * 5 2 1 7 7 C 1.38234 * 120.00076 * 180.27959 * 6 5 2 8 8 C 1.38236 * 120.00029 * 359.46874 * 7 6 5 9 9 C 1.50694 * 120.00279 * 180.27958 * 8 7 6 10 10 C 1.52993 * 109.47435 * 234.34347 * 9 8 7 11 11 C 1.53010 * 109.47020 * 354.34157 * 9 8 7 12 12 C 1.50704 * 109.47257 * 114.33945 * 9 8 7 13 13 O 1.21294 * 119.99603 * 4.43877 * 12 9 8 14 14 N 1.34775 * 120.00142 * 184.44315 * 12 9 8 15 15 C 1.37095 * 120.00200 * 180.02562 * 14 12 9 16 16 H 1.08006 * 119.99630 * 359.97438 * 15 14 12 17 17 C 1.38947 * 120.00162 * 179.97438 * 15 14 12 18 18 N 1.31415 * 120.00071 * 179.97438 * 17 15 14 19 19 Si 1.86795 * 119.99950 * 359.97438 * 17 15 14 20 20 H 1.48498 * 109.47329 * 90.00148 * 19 17 15 21 21 H 1.48503 * 109.46989 * 210.00162 * 19 17 15 22 22 H 1.48498 * 109.47200 * 330.00017 * 19 17 15 23 23 C 1.38236 * 119.99881 * 0.55528 * 8 7 6 24 24 C 1.38231 * 120.00183 * 240.02263 * 5 2 1 25 25 H 1.09001 * 109.47154 * 299.99500 * 1 2 3 26 26 H 1.09001 * 109.47624 * 59.99657 * 1 2 3 27 27 H 1.09009 * 109.47426 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47003 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.47196 * 300.00042 * 3 2 1 30 30 H 1.09001 * 109.46753 * 60.00254 * 3 2 1 31 31 H 1.09002 * 109.46927 * 299.99315 * 4 2 1 32 32 H 1.08992 * 109.47732 * 59.99528 * 4 2 1 33 33 H 1.08997 * 109.46810 * 179.97438 * 4 2 1 34 34 H 1.08001 * 119.99721 * 0.02562 * 6 5 2 35 35 H 1.07999 * 119.99616 * 179.73216 * 7 6 5 36 36 H 1.08999 * 109.47421 * 59.99435 * 10 9 8 37 37 H 1.09001 * 109.47249 * 179.97438 * 10 9 8 38 38 H 1.09003 * 109.46827 * 299.99664 * 10 9 8 39 39 H 1.09005 * 109.46727 * 59.99973 * 11 9 8 40 40 H 1.08992 * 109.46893 * 179.97438 * 11 9 8 41 41 H 1.08990 * 109.46836 * 300.00138 * 11 9 8 42 42 H 0.96994 * 120.00110 * 359.97438 * 14 12 9 43 43 H 0.96994 * 120.00053 * 180.02562 * 18 17 15 44 44 H 1.07992 * 120.00485 * 179.72054 * 23 8 7 45 45 H 1.07996 * 120.00111 * 0.02562 * 24 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 2.0324 -0.7104 1.2304 6 6 1.6984 -2.0339 1.4491 7 6 2.1545 -2.6839 2.5807 8 6 2.9536 -2.0137 3.4879 9 6 3.4561 -2.7241 4.7183 10 6 3.0711 -1.9223 5.9631 11 6 2.8283 -4.1174 4.7948 12 6 4.9560 -2.8521 4.6472 13 8 5.5656 -2.3400 3.7321 14 7 5.6199 -3.5357 5.6002 15 6 6.9844 -3.6517 5.5359 16 1 7.5273 -3.1956 4.7211 17 6 7.6690 -4.3560 6.5187 18 7 8.9769 -4.4677 6.4567 19 14 6.7301 -5.1442 7.9282 20 1 6.3455 -6.5288 7.5538 21 1 7.5909 -5.1794 9.1378 22 1 5.5076 -4.3509 8.2135 23 6 3.2872 -0.6901 3.2695 24 6 2.8267 -0.0385 2.1405 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6766 -1.7489 -1.2494 32 1 1.6766 -0.2074 -2.1393 33 1 3.1299 -0.7208 -1.2496 34 1 1.0778 -2.5588 0.7380 35 1 1.8900 -3.7166 2.7537 36 1 1.9863 -1.8297 6.0146 37 1 3.4341 -2.4364 6.8531 38 1 3.5183 -0.9297 5.9087 39 1 3.1027 -4.6886 3.9079 40 1 3.1921 -4.6313 5.6845 41 1 1.7436 -4.0248 4.8462 42 1 5.1324 -3.9449 6.3321 43 1 9.4547 -4.9596 7.1426 44 1 3.9078 -0.1651 3.9805 45 1 3.0870 0.9957 1.9700 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000533499274.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:31 Heat of formation + Delta-G solvation = -31.312015 kcal Electronic energy + Delta-G solvation = -23458.182880 eV Core-core repulsion = 20246.813702 eV Total energy + Delta-G solvation = -3211.369178 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.16745 -38.71571 -36.49816 -34.07438 -33.96501 -31.56160 -30.94429 -28.75323 -27.69312 -27.31901 -26.86288 -25.12041 -23.50165 -21.87507 -21.28249 -19.24035 -18.87179 -18.13554 -16.40537 -15.76973 -15.15087 -14.96827 -14.50239 -14.44526 -14.30406 -13.91631 -13.67693 -13.41475 -13.18838 -12.92261 -12.68976 -12.54439 -12.27610 -12.16900 -12.01150 -11.93219 -11.77720 -11.74627 -11.56678 -11.43022 -11.20906 -10.99749 -10.91355 -10.80537 -10.58117 -10.34222 -10.21394 -9.94299 -9.55497 -8.58527 -8.39850 -8.16231 -8.12446 -6.30501 -3.81416 1.68209 1.78840 3.02285 3.06523 3.14804 3.75677 4.03775 4.10648 4.60210 4.69994 4.74498 4.91762 4.95777 5.11150 5.25446 5.28082 5.31143 5.33435 5.46986 5.52390 5.53724 5.67766 5.70690 5.72703 5.77809 5.78220 5.80512 5.90831 5.93095 5.96885 5.99084 6.09067 6.15856 6.21426 6.24768 6.28909 6.38904 6.43811 6.45510 6.80683 6.90863 7.05283 7.35081 7.58639 8.16119 8.60708 8.95934 9.44081 9.84815 10.82772 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.030369 B = 0.003772 C = 0.003614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.770221 B = 7421.660066 C = 7745.335043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.028 4.028 3 C -0.143 4.143 4 C -0.138 4.138 5 C -0.081 4.081 6 C -0.121 4.121 7 C -0.118 4.118 8 C -0.044 4.044 9 C -0.043 4.043 10 C -0.135 4.135 11 C -0.142 4.142 12 C 0.463 3.537 13 O -0.567 6.567 14 N -0.587 5.587 15 C -0.304 4.304 16 H 0.119 0.881 17 C 0.042 3.958 18 N -0.882 5.882 19 Si 0.875 3.125 20 H -0.270 1.270 21 H -0.276 1.276 22 H -0.269 1.269 23 C -0.081 4.081 24 C -0.123 4.123 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.060 0.940 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.054 0.946 33 H 0.058 0.942 34 H 0.114 0.886 35 H 0.122 0.878 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.062 0.938 39 H 0.064 0.936 40 H 0.059 0.941 41 H 0.063 0.937 42 H 0.370 0.630 43 H 0.273 0.727 44 H 0.118 0.882 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.907 6.200 -7.152 21.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.028 4.028 3 C -0.201 4.201 4 C -0.195 4.195 5 C -0.081 4.081 6 C -0.139 4.139 7 C -0.135 4.135 8 C -0.045 4.045 9 C -0.046 4.046 10 C -0.193 4.193 11 C -0.200 4.200 12 C 0.249 3.751 13 O -0.449 6.449 14 N -0.225 5.225 15 C -0.433 4.433 16 H 0.137 0.863 17 C -0.161 4.161 18 N -0.522 5.522 19 Si 0.702 3.298 20 H -0.195 1.195 21 H -0.201 1.201 22 H -0.194 1.194 23 C -0.100 4.100 24 C -0.141 4.141 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.132 0.868 35 H 0.140 0.860 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.078 0.922 41 H 0.082 0.918 42 H 0.203 0.797 43 H 0.084 0.916 44 H 0.136 0.864 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -18.266 6.458 -7.673 20.838 hybrid contribution -0.367 -0.801 1.268 1.544 sum -18.633 5.657 -6.406 20.499 Atomic orbital electron populations 1.21873 0.94074 1.01868 1.01506 1.19452 0.95338 0.94963 0.93022 1.21956 1.01459 0.95089 1.01552 1.21885 1.01545 1.00092 0.96007 1.19662 0.98581 0.94166 0.95671 1.20787 1.01281 0.94331 0.97495 1.21065 0.98504 0.99724 0.94250 1.19323 0.96245 0.93788 0.95121 1.19676 0.94706 0.96015 0.94242 1.21860 1.01301 1.00334 0.95806 1.21953 1.00389 0.95070 1.02550 1.19492 0.87522 0.83637 0.84483 1.90577 1.68844 1.50310 1.35125 1.42191 1.07936 1.48874 1.23500 1.19451 0.80006 1.32382 1.11446 0.86306 1.25022 0.95500 0.97635 0.97925 1.69620 1.06208 1.41316 1.35026 0.86732 0.79953 0.80339 0.82803 1.19543 1.20103 1.19434 1.20916 0.97405 0.94321 0.97310 1.21058 0.98620 0.99972 0.94485 0.92607 0.92712 0.92538 0.92125 0.92723 0.92332 0.92509 0.92714 0.92334 0.86794 0.86020 0.92063 0.92090 0.91914 0.91704 0.92224 0.91833 0.79670 0.91637 0.86390 0.86165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 8.29 37.16 0.31 -0.92 16 2 C -0.03 -0.29 0.85 -155.66 -0.13 -0.43 16 3 C -0.14 -1.39 7.13 37.16 0.26 -1.12 16 4 C -0.14 -1.40 8.29 37.16 0.31 -1.09 16 5 C -0.08 -1.08 4.76 -104.63 -0.50 -1.58 16 6 C -0.12 -1.65 8.71 -39.58 -0.34 -1.99 16 7 C -0.12 -1.77 8.99 -39.58 -0.36 -2.13 16 8 C -0.04 -0.76 4.33 -104.63 -0.45 -1.21 16 9 C -0.04 -0.74 0.72 -156.81 -0.11 -0.86 16 10 C -0.14 -2.02 8.17 37.15 0.30 -1.72 16 11 C -0.14 -2.09 7.01 37.16 0.26 -1.83 16 12 C 0.46 10.71 6.35 -10.98 -0.07 10.64 16 13 O -0.57 -15.45 14.90 5.54 0.08 -15.36 16 14 N -0.59 -14.15 4.91 -10.96 -0.05 -14.21 16 15 C -0.30 -8.67 10.16 -14.94 -0.15 -8.83 16 16 H 0.12 3.88 7.39 -52.48 -0.39 3.49 16 17 C 0.04 1.16 5.50 -17.47 -0.10 1.06 16 18 N -0.88 -25.91 13.96 55.50 0.77 -25.13 16 19 Si 0.88 19.48 27.74 -169.99 -4.71 14.77 16 20 H -0.27 -5.88 7.11 56.52 0.40 -5.47 16 21 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 22 H -0.27 -5.45 6.52 56.52 0.37 -5.08 16 23 C -0.08 -1.38 8.15 -39.58 -0.32 -1.70 16 24 C -0.12 -1.82 8.98 -39.58 -0.36 -2.18 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.50 7.39 -51.92 -0.38 0.11 16 28 H 0.06 0.63 7.52 -51.93 -0.39 0.24 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.55 7.51 -51.93 -0.39 0.16 16 31 H 0.06 0.56 7.39 -51.93 -0.38 0.18 16 32 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.11 1.30 7.10 -52.49 -0.37 0.93 16 35 H 0.12 1.62 5.91 -52.49 -0.31 1.31 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.06 0.89 7.88 -51.93 -0.41 0.48 16 38 H 0.06 0.96 7.08 -51.93 -0.37 0.59 16 39 H 0.06 0.98 7.25 -51.93 -0.38 0.60 16 40 H 0.06 0.85 7.33 -51.93 -0.38 0.47 16 41 H 0.06 0.75 7.78 -51.93 -0.40 0.35 16 42 H 0.37 7.94 4.65 -40.82 -0.19 7.75 16 43 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 44 H 0.12 2.06 7.23 -52.49 -0.38 1.68 16 45 H 0.12 1.55 5.90 -52.49 -0.31 1.24 16 LS Contribution 351.07 15.07 5.29 5.29 Total: -1.00 -32.24 351.07 -7.21 -39.45 By element: Atomic # 1 Polarization: 18.21 SS G_CDS: -7.14 Total: 11.07 kcal Atomic # 6 Polarization: -14.43 SS G_CDS: -1.45 Total: -15.88 kcal Atomic # 7 Polarization: -40.06 SS G_CDS: 0.72 Total: -39.34 kcal Atomic # 8 Polarization: -15.45 SS G_CDS: 0.08 Total: -15.36 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -4.71 Total: 14.77 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.24 -7.21 -39.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000533499274.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.136 kcal (2) G-P(sol) polarization free energy of solvation -32.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds