Wall clock time and date at job start Tue Mar 31 2020 06:33:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47012 * 2 1 4 4 C 1.53005 * 109.46904 * 240.00559 * 2 1 3 5 5 C 1.50694 * 109.47582 * 120.00146 * 2 1 3 6 6 C 1.38243 * 119.99991 * 59.99662 * 5 2 1 7 7 C 1.38234 * 120.00076 * 180.27959 * 6 5 2 8 8 C 1.38236 * 120.00029 * 359.46874 * 7 6 5 9 9 C 1.50694 * 120.00279 * 180.27958 * 8 7 6 10 10 C 1.52993 * 109.47435 * 234.34347 * 9 8 7 11 11 C 1.53010 * 109.47020 * 354.34157 * 9 8 7 12 12 C 1.50704 * 109.47257 * 114.33945 * 9 8 7 13 13 O 1.21294 * 119.99603 * 4.43877 * 12 9 8 14 14 N 1.34775 * 120.00142 * 184.44315 * 12 9 8 15 15 C 1.37095 * 120.00200 * 180.02562 * 14 12 9 16 16 H 1.08006 * 119.99630 * 359.97438 * 15 14 12 17 17 C 1.38947 * 120.00162 * 179.97438 * 15 14 12 18 18 N 1.31415 * 120.00071 * 179.97438 * 17 15 14 19 19 Si 1.86795 * 119.99950 * 359.97438 * 17 15 14 20 20 H 1.48498 * 109.47329 * 90.00148 * 19 17 15 21 21 H 1.48503 * 109.46989 * 210.00162 * 19 17 15 22 22 H 1.48498 * 109.47200 * 330.00017 * 19 17 15 23 23 C 1.38236 * 119.99881 * 0.55528 * 8 7 6 24 24 C 1.38231 * 120.00183 * 240.02263 * 5 2 1 25 25 H 1.09001 * 109.47154 * 299.99500 * 1 2 3 26 26 H 1.09001 * 109.47624 * 59.99657 * 1 2 3 27 27 H 1.09009 * 109.47426 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47003 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.47196 * 300.00042 * 3 2 1 30 30 H 1.09001 * 109.46753 * 60.00254 * 3 2 1 31 31 H 1.09002 * 109.46927 * 299.99315 * 4 2 1 32 32 H 1.08992 * 109.47732 * 59.99528 * 4 2 1 33 33 H 1.08997 * 109.46810 * 179.97438 * 4 2 1 34 34 H 1.08001 * 119.99721 * 0.02562 * 6 5 2 35 35 H 1.07999 * 119.99616 * 179.73216 * 7 6 5 36 36 H 1.08999 * 109.47421 * 59.99435 * 10 9 8 37 37 H 1.09001 * 109.47249 * 179.97438 * 10 9 8 38 38 H 1.09003 * 109.46827 * 299.99664 * 10 9 8 39 39 H 1.09005 * 109.46727 * 59.99973 * 11 9 8 40 40 H 1.08992 * 109.46893 * 179.97438 * 11 9 8 41 41 H 1.08990 * 109.46836 * 300.00138 * 11 9 8 42 42 H 0.96994 * 120.00110 * 359.97438 * 14 12 9 43 43 H 0.96994 * 120.00053 * 180.02562 * 18 17 15 44 44 H 1.07992 * 120.00485 * 179.72054 * 23 8 7 45 45 H 1.07996 * 120.00111 * 0.02562 * 24 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 2.0324 -0.7104 1.2304 6 6 1.6984 -2.0339 1.4491 7 6 2.1545 -2.6839 2.5807 8 6 2.9536 -2.0137 3.4879 9 6 3.4561 -2.7241 4.7183 10 6 3.0711 -1.9223 5.9631 11 6 2.8283 -4.1174 4.7948 12 6 4.9560 -2.8521 4.6472 13 8 5.5656 -2.3400 3.7321 14 7 5.6199 -3.5357 5.6002 15 6 6.9844 -3.6517 5.5359 16 1 7.5273 -3.1956 4.7211 17 6 7.6690 -4.3560 6.5187 18 7 8.9769 -4.4677 6.4567 19 14 6.7301 -5.1442 7.9282 20 1 6.3455 -6.5288 7.5538 21 1 7.5909 -5.1794 9.1378 22 1 5.5076 -4.3509 8.2135 23 6 3.2872 -0.6901 3.2695 24 6 2.8267 -0.0385 2.1405 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6766 -1.7489 -1.2494 32 1 1.6766 -0.2074 -2.1393 33 1 3.1299 -0.7208 -1.2496 34 1 1.0778 -2.5588 0.7380 35 1 1.8900 -3.7166 2.7537 36 1 1.9863 -1.8297 6.0146 37 1 3.4341 -2.4364 6.8531 38 1 3.5183 -0.9297 5.9087 39 1 3.1027 -4.6886 3.9079 40 1 3.1921 -4.6313 5.6845 41 1 1.7436 -4.0248 4.8462 42 1 5.1324 -3.9449 6.3321 43 1 9.4547 -4.9596 7.1426 44 1 3.9078 -0.1651 3.9805 45 1 3.0870 0.9957 1.9700 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000533499274.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:30 Heat of formation + Delta-G solvation = -50.380279 kcal Electronic energy + Delta-G solvation = -23459.009742 eV Core-core repulsion = 20246.813702 eV Total energy + Delta-G solvation = -3212.196040 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.50087 -40.14734 -37.74066 -36.02828 -35.35180 -33.62707 -32.07803 -29.90144 -28.65530 -28.05408 -27.85609 -27.12630 -24.76705 -23.10659 -22.67095 -20.97078 -20.24259 -19.66819 -17.68861 -17.43875 -16.83408 -16.19175 -15.89584 -15.58188 -15.44055 -15.19091 -15.09832 -14.76035 -14.47813 -14.30619 -14.26541 -13.70585 -13.48998 -13.38623 -13.15946 -12.97186 -12.94772 -12.80585 -12.71639 -12.52956 -12.51440 -12.45235 -12.06084 -11.93628 -11.86312 -11.76842 -11.53553 -11.37725 -11.25123 -10.31443 -10.26190 -9.68799 -9.32263 -8.43674 -6.04277 0.51185 0.61751 1.26748 1.32244 1.41095 1.94005 2.20240 2.74045 3.10097 3.16367 3.59218 3.78264 3.82616 3.97668 4.07236 4.15736 4.21107 4.25248 4.35721 4.43934 4.59089 4.66887 4.73086 4.80490 4.82330 4.85265 4.89295 4.92069 4.92859 5.04275 5.05856 5.10387 5.15598 5.21547 5.24248 5.27445 5.31815 5.41438 5.49078 5.53295 5.67215 5.81132 5.84186 5.93016 6.21685 6.56281 6.85430 7.37174 7.93705 8.74163 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.030369 B = 0.003772 C = 0.003614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.770221 B = 7421.660066 C = 7745.335043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.029 4.029 3 C -0.144 4.144 4 C -0.138 4.138 5 C -0.078 4.078 6 C -0.122 4.122 7 C -0.122 4.122 8 C -0.070 4.070 9 C -0.034 4.034 10 C -0.134 4.134 11 C -0.142 4.142 12 C 0.461 3.539 13 O -0.617 6.617 14 N -0.585 5.585 15 C -0.329 4.329 16 H 0.054 0.946 17 C -0.013 4.013 18 N -0.933 5.933 19 Si 0.957 3.043 20 H -0.254 1.254 21 H -0.272 1.272 22 H -0.232 1.232 23 C -0.106 4.106 24 C -0.134 4.134 25 H 0.052 0.948 26 H 0.072 0.928 27 H 0.061 0.939 28 H 0.046 0.954 29 H 0.073 0.927 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.074 0.926 33 H 0.039 0.961 34 H 0.142 0.858 35 H 0.142 0.858 36 H 0.094 0.906 37 H 0.067 0.933 38 H 0.048 0.952 39 H 0.056 0.944 40 H 0.067 0.933 41 H 0.101 0.899 42 H 0.387 0.613 43 H 0.280 0.720 44 H 0.097 0.903 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.035 5.250 -6.607 24.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.029 4.029 3 C -0.201 4.201 4 C -0.195 4.195 5 C -0.078 4.078 6 C -0.139 4.139 7 C -0.140 4.140 8 C -0.071 4.071 9 C -0.038 4.038 10 C -0.191 4.191 11 C -0.199 4.199 12 C 0.249 3.751 13 O -0.502 6.502 14 N -0.226 5.226 15 C -0.458 4.458 16 H 0.072 0.928 17 C -0.211 4.211 18 N -0.574 5.574 19 Si 0.777 3.223 20 H -0.178 1.178 21 H -0.197 1.197 22 H -0.156 1.156 23 C -0.124 4.124 24 C -0.152 4.152 25 H 0.071 0.929 26 H 0.090 0.910 27 H 0.080 0.920 28 H 0.065 0.935 29 H 0.092 0.908 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.093 0.907 33 H 0.058 0.942 34 H 0.159 0.841 35 H 0.160 0.840 36 H 0.113 0.887 37 H 0.086 0.914 38 H 0.067 0.933 39 H 0.075 0.925 40 H 0.086 0.914 41 H 0.120 0.880 42 H 0.223 0.777 43 H 0.089 0.911 44 H 0.115 0.885 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -22.419 5.517 -7.130 24.164 hybrid contribution 0.988 -0.394 0.917 1.404 sum -21.431 5.123 -6.214 22.894 Atomic orbital electron populations 1.21844 0.92307 1.02483 1.02286 1.19543 0.96657 0.94984 0.91683 1.21961 1.00644 0.94927 1.02570 1.21890 1.00362 1.00626 0.96609 1.20055 0.97248 0.94407 0.96085 1.21146 1.00971 0.94424 0.97404 1.21342 0.97980 1.00585 0.94083 1.19439 0.97766 0.93892 0.95964 1.19656 0.89621 0.98586 0.95913 1.21885 1.03431 0.99184 0.94602 1.22010 1.02591 0.92700 1.02605 1.20769 0.90288 0.81229 0.82790 1.90545 1.70904 1.51770 1.36995 1.41998 1.06248 1.49700 1.24611 1.19017 0.82169 1.33788 1.10824 0.92805 1.26080 0.96502 0.97467 1.01095 1.69800 1.08673 1.42279 1.36636 0.85475 0.79485 0.79887 0.77469 1.17777 1.19661 1.15561 1.20945 0.98251 0.95033 0.98154 1.21256 0.98964 1.00707 0.94259 0.92860 0.90953 0.92015 0.93476 0.90841 0.92209 0.92108 0.90671 0.94217 0.84053 0.84030 0.88682 0.91409 0.93316 0.92488 0.91423 0.88026 0.77663 0.91095 0.88481 0.85169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.96 8.29 71.98 0.60 -1.37 16 2 C -0.03 -0.55 0.85 -52.93 -0.05 -0.59 16 3 C -0.14 -2.57 7.13 71.98 0.51 -2.06 16 4 C -0.14 -2.50 8.29 71.98 0.60 -1.91 16 5 C -0.08 -1.99 4.76 -19.87 -0.09 -2.09 16 6 C -0.12 -3.05 8.71 22.27 0.19 -2.86 16 7 C -0.12 -3.46 8.99 22.27 0.20 -3.26 16 8 C -0.07 -2.36 4.33 -19.87 -0.09 -2.45 16 9 C -0.03 -1.16 0.72 -53.67 -0.04 -1.20 16 10 C -0.13 -3.75 8.17 71.98 0.59 -3.17 16 11 C -0.14 -3.74 7.01 71.99 0.50 -3.23 16 12 C 0.46 21.98 6.35 87.66 0.56 22.54 16 13 O -0.62 -35.86 14.90 -3.07 -0.05 -35.91 16 14 N -0.59 -28.67 4.91 -306.98 -1.51 -30.18 16 15 C -0.33 -19.75 10.16 84.04 0.85 -18.90 16 16 H 0.05 3.85 7.39 -2.91 -0.02 3.83 16 17 C -0.01 -0.72 5.50 84.93 0.47 -0.25 16 18 N -0.93 -57.03 13.96 21.66 0.30 -56.72 16 19 Si 0.96 39.29 27.74 68.60 1.90 41.20 16 20 H -0.25 -9.78 7.11 99.48 0.71 -9.08 16 21 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 22 H -0.23 -8.09 6.52 99.48 0.65 -7.44 16 23 C -0.11 -3.71 8.15 22.27 0.18 -3.52 16 24 C -0.13 -4.00 8.98 22.27 0.20 -3.80 16 25 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 26 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.06 0.86 7.39 -2.38 -0.02 0.84 16 28 H 0.05 0.96 7.52 -2.38 -0.02 0.94 16 29 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.06 1.04 7.51 -2.39 -0.02 1.02 16 31 H 0.06 1.05 7.39 -2.39 -0.02 1.03 16 32 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.14 2.72 7.10 -2.91 -0.02 2.70 16 35 H 0.14 3.34 5.91 -2.91 -0.02 3.32 16 36 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 37 H 0.07 1.79 7.88 -2.39 -0.02 1.77 16 38 H 0.05 1.48 7.08 -2.39 -0.02 1.47 16 39 H 0.06 1.59 7.25 -2.38 -0.02 1.57 16 40 H 0.07 1.67 7.33 -2.39 -0.02 1.65 16 41 H 0.10 1.93 7.78 -2.39 -0.02 1.91 16 42 H 0.39 15.98 4.65 -92.71 -0.43 15.55 16 43 H 0.28 15.57 8.31 -92.71 -0.77 14.80 16 44 H 0.10 3.67 7.23 -2.91 -0.02 3.65 16 45 H 0.13 3.46 5.90 -2.91 -0.02 3.44 16 Total: -1.00 -76.81 351.07 6.33 -70.48 By element: Atomic # 1 Polarization: 38.76 SS G_CDS: 0.49 Total: 39.24 kcal Atomic # 6 Polarization: -33.30 SS G_CDS: 5.19 Total: -28.11 kcal Atomic # 7 Polarization: -85.70 SS G_CDS: -1.20 Total: -86.90 kcal Atomic # 8 Polarization: -35.86 SS G_CDS: -0.05 Total: -35.91 kcal Atomic # 14 Polarization: 39.29 SS G_CDS: 1.90 Total: 41.20 kcal Total: -76.81 6.33 -70.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000533499274.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.102 kcal (2) G-P(sol) polarization free energy of solvation -76.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds