Wall clock time and date at job start Tue Mar 31 2020 06:50:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53004 * 109.46765 * 2 1 4 4 C 1.52995 * 109.47220 * 65.00118 * 3 2 1 5 5 C 1.53005 * 109.47222 * 186.43320 * 4 3 2 6 6 C 1.53000 * 109.46853 * 185.00038 * 3 2 1 7 7 H 1.09002 * 109.47043 * 186.80442 * 6 3 2 8 8 C 1.53003 * 109.47091 * 306.80532 * 6 3 2 9 9 C 1.50700 * 109.47403 * 66.80480 * 6 3 2 10 10 O 1.21287 * 119.99614 * 353.62811 * 9 6 3 11 11 N 1.34774 * 120.00220 * 173.62671 * 9 6 3 12 12 C 1.37145 * 119.99957 * 354.89541 * 11 9 6 13 13 H 1.07994 * 119.99945 * 335.79132 * 12 11 9 14 14 C 1.38889 * 119.99917 * 155.78936 * 12 11 9 15 15 N 1.31421 * 120.00064 * 351.75213 * 14 12 11 16 16 Si 1.86793 * 119.99729 * 171.74778 * 14 12 11 17 17 H 1.48506 * 109.47336 * 0.02562 * 16 14 12 18 18 H 1.48505 * 109.47143 * 120.00414 * 16 14 12 19 19 H 1.48502 * 109.47266 * 240.00070 * 16 14 12 20 20 C 1.39785 * 120.00057 * 174.89099 * 11 9 6 21 21 C 1.38969 * 120.07763 * 289.91443 * 20 11 9 22 22 C 1.38085 * 119.92161 * 179.78937 * 21 20 11 23 23 C 1.38305 * 120.07298 * 0.46487 * 22 21 20 24 24 C 1.38311 * 120.16108 * 359.78862 * 23 22 21 25 25 C 1.38082 * 120.07633 * 359.97438 * 24 23 22 26 26 H 1.09000 * 109.46402 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.46804 * 299.99748 * 1 2 3 28 28 H 1.08995 * 109.46625 * 60.00323 * 1 2 3 29 29 H 1.08995 * 109.47015 * 239.99741 * 2 1 3 30 30 H 1.08995 * 109.47126 * 119.99510 * 2 1 3 31 31 H 1.09000 * 109.47107 * 304.99690 * 3 2 1 32 32 H 1.09007 * 109.47242 * 306.43169 * 4 3 2 33 33 H 1.08999 * 109.47342 * 66.43432 * 4 3 2 34 34 H 1.08996 * 109.46825 * 60.31525 * 5 4 3 35 35 H 1.08996 * 109.46873 * 180.31761 * 5 4 3 36 36 H 1.08998 * 109.46656 * 300.31887 * 5 4 3 37 37 H 1.09003 * 109.47009 * 300.22092 * 8 6 3 38 38 H 1.08997 * 109.47142 * 180.21947 * 8 6 3 39 39 H 1.08997 * 109.46940 * 60.22188 * 8 6 3 40 40 H 0.97000 * 119.99706 * 185.02125 * 15 14 12 41 41 H 1.07999 * 120.03511 * 0.02562 * 21 20 11 42 42 H 1.07996 * 119.96341 * 180.22949 * 22 21 20 43 43 H 1.08008 * 119.91831 * 179.76118 * 23 22 21 44 44 H 1.07999 * 119.96232 * 179.97438 * 24 23 22 45 45 H 1.08002 * 120.03794 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.6353 2.1266 1.3073 5 6 2.0030 3.6103 1.2417 6 6 3.5648 1.4444 -0.1257 7 1 3.9381 2.4613 -0.0047 8 6 4.1670 0.5476 0.9579 9 6 3.9576 0.9236 -1.4843 10 8 3.1119 0.4767 -2.2300 11 7 5.2484 0.9545 -1.8705 12 6 6.1888 1.5541 -1.0724 13 1 5.8920 2.3169 -0.3679 14 6 7.5229 1.1805 -1.1703 15 7 7.8632 0.1455 -1.9054 16 14 8.8334 2.1491 -0.2574 17 1 8.1949 3.2594 0.4941 18 1 9.5408 1.2521 0.6916 19 1 9.8065 2.7053 -1.2315 20 6 5.6287 0.3752 -3.0845 21 6 5.6106 -1.0065 -3.2328 22 6 5.9828 -1.5751 -4.4348 23 6 6.3825 -0.7717 -5.4873 24 6 6.4068 0.6035 -5.3415 25 6 6.0313 1.1791 -4.1439 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3632 0.5138 -0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.8934 -0.5137 0.8900 31 1 1.6054 1.9816 -0.8418 32 1 0.5597 2.0249 1.4528 33 1 2.1603 1.6586 2.1400 34 1 1.4736 4.0795 0.4125 35 1 1.7198 4.0964 2.1753 36 1 3.0777 3.7119 1.0906 37 1 3.8797 0.9221 1.9404 38 1 5.2535 0.5520 0.8707 39 1 3.7967 -0.4701 0.8343 40 1 8.7838 -0.1599 -1.9162 41 1 5.3021 -1.6345 -2.4101 42 1 5.9654 -2.6485 -4.5520 43 1 6.6768 -1.2194 -6.4251 44 1 6.7199 1.2277 -6.1653 45 1 6.0509 2.2530 -4.0306 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000534133875.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:34 Heat of formation + Delta-G solvation = -22.739399 kcal Electronic energy + Delta-G solvation = -24427.774913 eV Core-core repulsion = 21216.777471 eV Total energy + Delta-G solvation = -3210.997442 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.71351 -37.98058 -36.27025 -34.69166 -31.75744 -31.41392 -31.16098 -29.83523 -28.55964 -25.82524 -25.01817 -23.83314 -22.33536 -21.57794 -21.35809 -19.47485 -18.46400 -17.40869 -16.32024 -15.53269 -14.92320 -14.71078 -14.41911 -14.30809 -14.17898 -13.73693 -13.44947 -13.19347 -13.03748 -12.54770 -12.39952 -12.19027 -11.78885 -11.68657 -11.57692 -11.53161 -11.27548 -11.23236 -11.07856 -10.89850 -10.82404 -10.56119 -10.52400 -10.25736 -10.19942 -9.95003 -9.86010 -9.60882 -9.31800 -8.33446 -8.15664 -7.81367 -7.40403 -6.23480 -4.05242 2.51678 2.55571 3.07000 3.17690 3.19811 3.81239 4.03631 4.62393 4.87883 5.12114 5.18146 5.25982 5.38711 5.57864 5.68544 5.78365 5.83127 5.86834 5.90437 5.95714 6.00933 6.05648 6.07362 6.16027 6.22303 6.27034 6.35810 6.45236 6.47115 6.50622 6.57002 6.60045 6.63706 6.77353 6.86014 6.90101 7.06431 7.10573 7.13750 7.35178 7.39764 7.50178 7.68749 7.81812 8.04250 8.46670 9.01922 9.40244 9.83797 10.63823 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.013912 B = 0.006837 C = 0.005135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2012.113997 B = 4094.427723 C = 5451.026572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.126 4.126 3 C -0.065 4.065 4 C -0.122 4.122 5 C -0.154 4.154 6 C -0.084 4.084 7 H 0.085 0.915 8 C -0.143 4.143 9 C 0.476 3.524 10 O -0.588 6.588 11 N -0.415 5.415 12 C -0.343 4.343 13 H 0.099 0.901 14 C 0.044 3.956 15 N -0.851 5.851 16 Si 0.917 3.083 17 H -0.268 1.268 18 H -0.280 1.280 19 H -0.280 1.280 20 C 0.245 3.755 21 C -0.079 4.079 22 C -0.119 4.119 23 C -0.152 4.152 24 C -0.120 4.120 25 C -0.124 4.124 26 H 0.044 0.956 27 H 0.047 0.953 28 H 0.050 0.950 29 H 0.088 0.912 30 H 0.053 0.947 31 H 0.069 0.931 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.050 0.950 35 H 0.046 0.954 36 H 0.059 0.941 37 H 0.049 0.951 38 H 0.081 0.919 39 H 0.050 0.950 40 H 0.271 0.729 41 H 0.102 0.898 42 H 0.104 0.896 43 H 0.103 0.897 44 H 0.104 0.896 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.472 1.556 3.343 6.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.163 4.163 3 C -0.083 4.083 4 C -0.160 4.160 5 C -0.211 4.211 6 C -0.105 4.105 7 H 0.103 0.897 8 C -0.201 4.201 9 C 0.266 3.734 10 O -0.473 6.473 11 N -0.131 5.131 12 C -0.470 4.470 13 H 0.117 0.883 14 C -0.163 4.163 15 N -0.486 5.486 16 Si 0.744 3.256 17 H -0.192 1.192 18 H -0.206 1.206 19 H -0.206 1.206 20 C 0.153 3.847 21 C -0.099 4.099 22 C -0.138 4.138 23 C -0.171 4.171 24 C -0.139 4.139 25 C -0.144 4.144 26 H 0.064 0.936 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.106 0.894 30 H 0.071 0.929 31 H 0.087 0.913 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.078 0.922 37 H 0.068 0.932 38 H 0.100 0.900 39 H 0.069 0.931 40 H 0.082 0.918 41 H 0.120 0.880 42 H 0.122 0.878 43 H 0.121 0.879 44 H 0.122 0.878 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -5.677 1.277 2.891 6.498 hybrid contribution 1.145 0.490 0.526 1.352 sum -4.532 1.767 3.417 5.944 Atomic orbital electron populations 1.21791 0.97114 1.00576 1.00970 1.21745 0.94618 0.96916 1.03016 1.20944 0.94177 0.96386 0.96843 1.21691 1.00671 0.95391 0.98216 1.21835 1.02032 0.96471 1.00809 1.20991 0.95079 1.00731 0.93712 0.89744 1.21806 1.03312 0.98689 0.96262 1.20352 0.82219 0.82239 0.88558 1.90523 1.49923 1.51222 1.55610 1.41331 1.06464 1.50093 1.15201 1.19556 0.87082 1.20359 1.19979 0.88298 1.25321 0.98476 0.95894 0.96628 1.69865 1.19254 1.22424 1.37069 0.86013 0.80865 0.79641 0.79115 1.19238 1.20620 1.20599 1.17185 0.91892 0.90845 0.84757 1.20747 0.98943 0.93949 0.96261 1.20664 1.01230 0.98291 0.93634 1.20693 1.04269 0.93791 0.98299 1.20651 1.01717 0.94689 0.96819 1.20916 1.01749 0.98946 0.92783 0.93640 0.93415 0.93112 0.89389 0.92863 0.91300 0.92207 0.91908 0.93052 0.93440 0.92242 0.93206 0.89968 0.93096 0.91815 0.87973 0.87763 0.87934 0.87795 0.87598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.68 37.16 0.36 -1.69 16 2 C -0.13 -2.07 4.48 -26.72 -0.12 -2.19 16 3 C -0.06 -1.07 1.26 -90.62 -0.11 -1.18 16 4 C -0.12 -1.64 5.19 -26.73 -0.14 -1.78 16 5 C -0.15 -1.95 9.71 37.16 0.36 -1.59 16 6 C -0.08 -1.58 1.60 -91.77 -0.15 -1.72 16 7 H 0.08 1.56 5.32 -51.93 -0.28 1.29 16 8 C -0.14 -2.53 8.24 37.16 0.31 -2.22 16 9 C 0.48 11.00 6.60 -10.99 -0.07 10.93 16 10 O -0.59 -14.78 13.73 5.55 0.08 -14.71 16 11 N -0.42 -10.15 2.67 -58.98 -0.16 -10.31 16 12 C -0.34 -8.25 7.13 -14.93 -0.11 -8.36 16 13 H 0.10 2.26 6.33 -52.49 -0.33 1.92 16 14 C 0.04 1.07 5.29 -17.49 -0.09 0.98 16 15 N -0.85 -21.75 10.59 55.49 0.59 -21.16 16 16 Si 0.92 19.05 29.56 -169.99 -5.03 14.03 16 17 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 18 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 19 H -0.28 -5.96 7.11 56.52 0.40 -5.55 16 20 C 0.24 6.05 2.45 -83.70 -0.20 5.84 16 21 C -0.08 -1.89 8.78 -39.37 -0.35 -2.24 16 22 C -0.12 -2.50 10.04 -39.61 -0.40 -2.90 16 23 C -0.15 -3.01 10.04 -39.53 -0.40 -3.40 16 24 C -0.12 -2.47 10.04 -39.61 -0.40 -2.87 16 25 C -0.12 -2.90 9.70 -39.37 -0.38 -3.28 16 26 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.05 0.58 6.43 -51.93 -0.33 0.25 16 28 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.09 1.75 5.82 -51.93 -0.30 1.45 16 30 H 0.05 0.83 6.64 -51.93 -0.35 0.48 16 31 H 0.07 1.25 7.99 -51.93 -0.41 0.83 16 32 H 0.06 0.74 6.29 -51.93 -0.33 0.41 16 33 H 0.06 0.82 6.36 -51.93 -0.33 0.49 16 34 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.80 6.46 -51.93 -0.34 0.46 16 37 H 0.05 0.74 6.49 -51.93 -0.34 0.41 16 38 H 0.08 1.62 6.22 -51.93 -0.32 1.30 16 39 H 0.05 0.91 6.45 -51.93 -0.34 0.57 16 40 H 0.27 6.71 8.32 -40.82 -0.34 6.37 16 41 H 0.10 2.49 8.06 -52.49 -0.42 2.06 16 42 H 0.10 1.88 8.06 -52.49 -0.42 1.46 16 43 H 0.10 1.69 8.06 -52.48 -0.42 1.27 16 44 H 0.10 1.82 8.06 -52.49 -0.42 1.40 16 45 H 0.11 2.43 8.06 -52.49 -0.42 2.01 16 LS Contribution 346.11 15.07 5.22 5.22 Total: -1.00 -27.28 346.11 -8.13 -35.41 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: -6.93 Total: 9.22 kcal Atomic # 6 Polarization: -15.80 SS G_CDS: -1.89 Total: -17.69 kcal Atomic # 7 Polarization: -31.90 SS G_CDS: 0.43 Total: -31.47 kcal Atomic # 8 Polarization: -14.78 SS G_CDS: 0.08 Total: -14.71 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -5.03 Total: 14.03 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -27.28 -8.13 -35.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000534133875.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.670 kcal (2) G-P(sol) polarization free energy of solvation -27.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds