Wall clock time and date at job start Tue Mar 31 2020 06:50:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47292 * 2 1 4 4 C 1.52991 * 109.47310 * 66.79702 * 3 2 1 5 5 C 1.53002 * 109.47220 * 187.69611 * 4 3 2 6 6 C 1.53005 * 109.47085 * 186.79809 * 3 2 1 7 7 H 1.08999 * 109.46763 * 176.29511 * 6 3 2 8 8 C 1.53002 * 109.46982 * 56.29771 * 6 3 2 9 9 C 1.50696 * 109.47146 * 296.29714 * 6 3 2 10 10 O 1.21280 * 120.00256 * 9.48372 * 9 6 3 11 11 N 1.34775 * 119.99994 * 189.76035 * 9 6 3 12 12 C 1.37139 * 119.99739 * 5.51344 * 11 9 6 13 13 H 1.08003 * 119.99849 * 49.77292 * 12 11 9 14 14 C 1.38892 * 120.00211 * 229.76116 * 12 11 9 15 15 N 1.31420 * 120.00192 * 197.50915 * 14 12 11 16 16 Si 1.86800 * 119.99672 * 17.51289 * 14 12 11 17 17 H 1.48507 * 109.46934 * 94.61939 * 16 14 12 18 18 H 1.48501 * 109.46853 * 214.61644 * 16 14 12 19 19 H 1.48494 * 109.47369 * 334.62101 * 16 14 12 20 20 C 1.39786 * 120.00201 * 185.52177 * 11 9 6 21 21 C 1.38962 * 120.07514 * 7.53193 * 20 11 9 22 22 C 1.38083 * 119.92123 * 179.77255 * 21 20 11 23 23 C 1.38315 * 120.07704 * 0.50688 * 22 21 20 24 24 C 1.38306 * 120.15303 * 359.74863 * 23 22 21 25 25 C 1.38086 * 120.07953 * 359.97438 * 24 23 22 26 26 H 1.09002 * 109.47620 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47503 * 300.00339 * 1 2 3 28 28 H 1.08997 * 109.47245 * 60.00497 * 1 2 3 29 29 H 1.08999 * 109.47032 * 239.99426 * 2 1 3 30 30 H 1.09007 * 109.46781 * 119.99824 * 2 1 3 31 31 H 1.08998 * 109.47029 * 306.79490 * 3 2 1 32 32 H 1.08995 * 109.47254 * 307.70011 * 4 3 2 33 33 H 1.09005 * 109.47360 * 67.69692 * 4 3 2 34 34 H 1.09000 * 109.47360 * 303.76111 * 5 4 3 35 35 H 1.09006 * 109.46471 * 63.75766 * 5 4 3 36 36 H 1.08995 * 109.47395 * 183.75494 * 5 4 3 37 37 H 1.09003 * 109.47537 * 61.22127 * 8 6 3 38 38 H 1.08997 * 109.46960 * 181.22511 * 8 6 3 39 39 H 1.09004 * 109.47061 * 301.22206 * 8 6 3 40 40 H 0.96993 * 119.99929 * 180.02562 * 15 14 12 41 41 H 1.08004 * 120.04054 * 0.02790 * 21 20 11 42 42 H 1.08001 * 119.96332 * 180.25416 * 22 21 20 43 43 H 1.07997 * 119.92183 * 179.72549 * 23 22 21 44 44 H 1.07997 * 119.95985 * 179.97438 * 24 23 22 45 45 H 1.07995 * 120.03640 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6742 2.1128 1.3257 5 6 2.0112 3.6035 1.2536 6 6 3.5605 1.4458 -0.1708 7 1 3.9164 2.4739 -0.2368 8 6 3.9316 0.6945 -1.4509 9 6 4.2004 0.7677 1.0131 10 8 3.5127 0.1756 1.8177 11 7 5.5365 0.8239 1.1809 12 6 6.3015 1.5909 0.3399 13 1 6.0272 2.6174 0.1461 14 6 7.4290 1.0477 -0.2624 15 7 8.3435 1.8380 -0.7784 16 14 7.6454 -0.8061 -0.3390 17 1 7.1333 -1.3109 -1.6384 18 1 9.0863 -1.1419 -0.2107 19 1 6.8888 -1.4391 0.7708 20 6 6.1425 0.1003 2.2120 21 6 5.3955 -0.7972 2.9653 22 6 5.9985 -1.5138 3.9800 23 6 7.3419 -1.3314 4.2538 24 6 8.0872 -0.4350 3.5095 25 6 7.4921 0.2807 2.4896 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.5808 1.9902 -0.8229 32 1 0.6075 1.9900 1.5128 33 1 2.2404 1.6510 2.1347 34 1 3.0643 3.7261 1.0005 35 1 1.3961 4.0783 0.4891 36 1 1.8131 4.0679 2.2195 37 1 3.4865 1.1974 -2.3095 38 1 5.0158 0.6780 -1.5612 39 1 3.5566 -0.3275 -1.3940 40 1 9.1307 1.4586 -1.1993 41 1 4.3455 -0.9372 2.7547 42 1 5.4195 -2.2145 4.5633 43 1 7.8099 -1.8899 5.0509 44 1 9.1359 -0.2948 3.7262 45 1 8.0745 0.9807 1.9091 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000534133878.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:37 Heat of formation + Delta-G solvation = -3.376290 kcal Electronic energy + Delta-G solvation = -24864.656503 eV Core-core repulsion = 21654.498708 eV Total energy + Delta-G solvation = -3210.157795 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.40347 -38.26708 -36.20552 -35.06493 -32.25288 -31.68619 -31.41585 -30.01577 -28.82941 -25.87394 -25.33689 -23.58489 -22.18412 -21.83216 -21.26568 -20.06350 -18.86797 -17.61380 -16.28830 -15.83381 -15.47645 -14.71188 -14.46004 -14.29981 -14.12109 -13.84159 -13.62058 -13.28985 -13.15284 -12.85052 -12.66526 -12.28853 -12.27356 -12.09473 -11.83430 -11.49357 -11.38907 -11.30560 -11.20938 -11.07823 -10.84684 -10.72268 -10.38818 -10.31260 -10.13413 -10.05507 -9.74550 -9.66099 -9.43628 -8.73629 -8.18137 -8.07037 -7.00315 -6.64126 -4.43031 2.09190 2.22965 3.09344 3.18288 3.32570 3.57355 4.04541 4.19468 4.59711 4.89201 5.17788 5.26390 5.28269 5.59424 5.63969 5.65588 5.70381 5.77122 5.82302 5.88447 5.91862 5.95506 6.10659 6.13950 6.22784 6.24560 6.32205 6.36420 6.41900 6.44007 6.44335 6.54050 6.58928 6.71081 6.76798 6.83543 6.84929 6.98922 7.09232 7.19332 7.31035 7.35354 7.39999 7.76044 7.99161 8.21230 8.77754 9.10782 9.40758 10.41294 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.015718 B = 0.007252 C = 0.006081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.960290 B = 3860.143481 C = 4603.110610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.135 4.135 3 C -0.064 4.064 4 C -0.133 4.133 5 C -0.153 4.153 6 C -0.085 4.085 7 H 0.095 0.905 8 C -0.144 4.144 9 C 0.501 3.499 10 O -0.552 6.552 11 N -0.406 5.406 12 C -0.365 4.365 13 H 0.107 0.893 14 C 0.089 3.911 15 N -0.850 5.850 16 Si 0.851 3.149 17 H -0.277 1.277 18 H -0.278 1.278 19 H -0.239 1.239 20 C 0.175 3.825 21 C -0.185 4.185 22 C -0.108 4.108 23 C -0.175 4.175 24 C -0.108 4.108 25 C -0.160 4.160 26 H 0.045 0.955 27 H 0.052 0.948 28 H 0.044 0.956 29 H 0.056 0.944 30 H 0.093 0.907 31 H 0.064 0.936 32 H 0.054 0.946 33 H 0.089 0.911 34 H 0.056 0.944 35 H 0.045 0.955 36 H 0.046 0.954 37 H 0.054 0.946 38 H 0.079 0.921 39 H 0.051 0.949 40 H 0.279 0.721 41 H 0.173 0.827 42 H 0.110 0.890 43 H 0.106 0.894 44 H 0.111 0.889 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.620 -2.109 1.572 8.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.172 4.172 3 C -0.083 4.083 4 C -0.170 4.170 5 C -0.211 4.211 6 C -0.105 4.105 7 H 0.113 0.887 8 C -0.201 4.201 9 C 0.294 3.706 10 O -0.436 6.436 11 N -0.115 5.115 12 C -0.491 4.491 13 H 0.125 0.875 14 C -0.122 4.122 15 N -0.482 5.482 16 Si 0.675 3.325 17 H -0.203 1.203 18 H -0.203 1.203 19 H -0.162 1.162 20 C 0.078 3.922 21 C -0.205 4.205 22 C -0.127 4.127 23 C -0.195 4.195 24 C -0.127 4.127 25 C -0.181 4.181 26 H 0.064 0.936 27 H 0.071 0.929 28 H 0.063 0.937 29 H 0.075 0.925 30 H 0.111 0.889 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.108 0.892 34 H 0.075 0.925 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.073 0.927 38 H 0.098 0.902 39 H 0.070 0.930 40 H 0.089 0.911 41 H 0.189 0.811 42 H 0.128 0.872 43 H 0.124 0.876 44 H 0.129 0.871 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -7.794 -2.287 1.774 8.314 hybrid contribution 0.650 -0.714 -0.290 1.009 sum -7.145 -3.001 1.484 7.890 Atomic orbital electron populations 1.21804 0.97105 1.00605 1.01024 1.21906 0.94532 0.97043 1.03744 1.20993 0.93597 0.96314 0.97418 1.21862 1.01115 0.94851 0.99164 1.21833 1.01740 0.96860 1.00620 1.21044 0.94419 1.01183 0.93901 0.88722 1.21790 1.03897 0.99254 0.95200 1.20930 0.82075 0.80916 0.86680 1.90152 1.62567 1.45333 1.45591 1.41506 1.05763 1.39979 1.24206 1.18898 1.08773 0.96212 1.25242 0.87530 1.25391 0.94684 0.98419 0.93669 1.69739 1.08033 1.35977 1.34450 0.87226 0.79153 0.86075 0.80011 1.20265 1.20302 1.16177 1.18425 0.92516 0.92484 0.88794 1.22528 1.03805 0.97165 0.96964 1.20971 0.94510 0.99180 0.97996 1.20867 0.94829 1.01963 1.01805 1.20828 0.98979 0.96999 0.95888 1.21177 0.94698 1.02332 0.99846 0.93596 0.92874 0.93686 0.92496 0.88854 0.91802 0.92730 0.89228 0.92487 0.93539 0.93493 0.92711 0.90172 0.93045 0.91087 0.81081 0.87237 0.87611 0.87061 0.84193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.71 37.16 0.36 -1.53 16 2 C -0.14 -2.06 4.79 -26.73 -0.13 -2.19 16 3 C -0.06 -1.00 1.66 -90.62 -0.15 -1.15 16 4 C -0.13 -2.06 5.05 -26.73 -0.14 -2.19 16 5 C -0.15 -2.21 9.78 37.16 0.36 -1.85 16 6 C -0.08 -1.53 1.63 -91.77 -0.15 -1.68 16 7 H 0.09 1.76 5.91 -51.93 -0.31 1.45 16 8 C -0.14 -2.54 8.66 37.16 0.32 -2.22 16 9 C 0.50 10.54 6.12 -10.99 -0.07 10.47 16 10 O -0.55 -11.72 8.05 5.56 0.04 -11.68 16 11 N -0.41 -9.37 2.21 -58.98 -0.13 -9.50 16 12 C -0.37 -8.89 6.59 -14.94 -0.10 -8.99 16 13 H 0.11 2.73 7.45 -52.48 -0.39 2.34 16 14 C 0.09 2.21 3.63 -17.49 -0.06 2.15 16 15 N -0.85 -22.07 13.96 55.49 0.77 -21.30 16 16 Si 0.85 19.96 25.42 -169.99 -4.32 15.64 16 17 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 18 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 19 H -0.24 -5.78 5.16 56.52 0.29 -5.48 16 20 C 0.17 4.04 3.93 -83.70 -0.33 3.71 16 21 C -0.18 -4.00 8.90 -39.37 -0.35 -4.36 16 22 C -0.11 -2.05 10.04 -39.61 -0.40 -2.45 16 23 C -0.18 -3.20 10.04 -39.53 -0.40 -3.60 16 24 C -0.11 -2.12 10.04 -39.61 -0.40 -2.52 16 25 C -0.16 -3.60 6.54 -39.37 -0.26 -3.86 16 26 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.05 0.67 6.48 -51.93 -0.34 0.33 16 28 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.86 5.96 -51.93 -0.31 0.55 16 30 H 0.09 1.64 5.68 -51.93 -0.30 1.35 16 31 H 0.06 0.91 8.13 -51.93 -0.42 0.49 16 32 H 0.05 0.77 6.32 -51.93 -0.33 0.44 16 33 H 0.09 1.63 5.40 -51.93 -0.28 1.35 16 34 H 0.06 0.90 6.58 -51.93 -0.34 0.56 16 35 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.08 1.63 6.19 -51.93 -0.32 1.31 16 39 H 0.05 0.88 6.15 -51.93 -0.32 0.56 16 40 H 0.28 6.84 8.31 -40.82 -0.34 6.50 16 41 H 0.17 3.77 4.72 -55.22 -0.26 3.51 16 42 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 43 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 44 H 0.11 1.88 8.06 -52.49 -0.42 1.46 16 45 H 0.14 3.36 5.69 -52.49 -0.30 3.06 16 LS Contribution 329.95 15.07 4.97 4.97 Total: -1.00 -25.61 329.95 -7.37 -32.99 By element: Atomic # 1 Polarization: 17.97 SS G_CDS: -6.84 Total: 11.13 kcal Atomic # 6 Polarization: -20.38 SS G_CDS: -1.87 Total: -22.25 kcal Atomic # 7 Polarization: -31.44 SS G_CDS: 0.64 Total: -30.80 kcal Atomic # 8 Polarization: -11.72 SS G_CDS: 0.04 Total: -11.68 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -4.32 Total: 15.64 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -25.61 -7.37 -32.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000534133878.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.609 kcal (2) G-P(sol) polarization free energy of solvation -25.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds