Wall clock time and date at job start Tue Mar 31 2020 06:50:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47292 * 2 1 4 4 C 1.52991 * 109.47310 * 66.79702 * 3 2 1 5 5 C 1.53002 * 109.47220 * 187.69611 * 4 3 2 6 6 C 1.53005 * 109.47085 * 186.79809 * 3 2 1 7 7 H 1.08999 * 109.46763 * 176.29511 * 6 3 2 8 8 C 1.53002 * 109.46982 * 56.29771 * 6 3 2 9 9 C 1.50696 * 109.47146 * 296.29714 * 6 3 2 10 10 O 1.21280 * 120.00256 * 9.48372 * 9 6 3 11 11 N 1.34775 * 119.99994 * 189.76035 * 9 6 3 12 12 C 1.37139 * 119.99739 * 5.51344 * 11 9 6 13 13 H 1.08003 * 119.99849 * 49.77292 * 12 11 9 14 14 C 1.38892 * 120.00211 * 229.76116 * 12 11 9 15 15 N 1.31420 * 120.00192 * 197.50915 * 14 12 11 16 16 Si 1.86800 * 119.99672 * 17.51289 * 14 12 11 17 17 H 1.48507 * 109.46934 * 94.61939 * 16 14 12 18 18 H 1.48501 * 109.46853 * 214.61644 * 16 14 12 19 19 H 1.48494 * 109.47369 * 334.62101 * 16 14 12 20 20 C 1.39786 * 120.00201 * 185.52177 * 11 9 6 21 21 C 1.38962 * 120.07514 * 7.53193 * 20 11 9 22 22 C 1.38083 * 119.92123 * 179.77255 * 21 20 11 23 23 C 1.38315 * 120.07704 * 0.50688 * 22 21 20 24 24 C 1.38306 * 120.15303 * 359.74863 * 23 22 21 25 25 C 1.38086 * 120.07953 * 359.97438 * 24 23 22 26 26 H 1.09002 * 109.47620 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47503 * 300.00339 * 1 2 3 28 28 H 1.08997 * 109.47245 * 60.00497 * 1 2 3 29 29 H 1.08999 * 109.47032 * 239.99426 * 2 1 3 30 30 H 1.09007 * 109.46781 * 119.99824 * 2 1 3 31 31 H 1.08998 * 109.47029 * 306.79490 * 3 2 1 32 32 H 1.08995 * 109.47254 * 307.70011 * 4 3 2 33 33 H 1.09005 * 109.47360 * 67.69692 * 4 3 2 34 34 H 1.09000 * 109.47360 * 303.76111 * 5 4 3 35 35 H 1.09006 * 109.46471 * 63.75766 * 5 4 3 36 36 H 1.08995 * 109.47395 * 183.75494 * 5 4 3 37 37 H 1.09003 * 109.47537 * 61.22127 * 8 6 3 38 38 H 1.08997 * 109.46960 * 181.22511 * 8 6 3 39 39 H 1.09004 * 109.47061 * 301.22206 * 8 6 3 40 40 H 0.96993 * 119.99929 * 180.02562 * 15 14 12 41 41 H 1.08004 * 120.04054 * 0.02790 * 21 20 11 42 42 H 1.08001 * 119.96332 * 180.25416 * 22 21 20 43 43 H 1.07997 * 119.92183 * 179.72549 * 23 22 21 44 44 H 1.07997 * 119.95985 * 179.97438 * 24 23 22 45 45 H 1.07995 * 120.03640 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6742 2.1128 1.3257 5 6 2.0112 3.6035 1.2536 6 6 3.5605 1.4458 -0.1708 7 1 3.9164 2.4739 -0.2368 8 6 3.9316 0.6945 -1.4509 9 6 4.2004 0.7677 1.0131 10 8 3.5127 0.1756 1.8177 11 7 5.5365 0.8239 1.1809 12 6 6.3015 1.5909 0.3399 13 1 6.0272 2.6174 0.1461 14 6 7.4290 1.0477 -0.2624 15 7 8.3435 1.8380 -0.7784 16 14 7.6454 -0.8061 -0.3390 17 1 7.1333 -1.3109 -1.6384 18 1 9.0863 -1.1419 -0.2107 19 1 6.8888 -1.4391 0.7708 20 6 6.1425 0.1003 2.2120 21 6 5.3955 -0.7972 2.9653 22 6 5.9985 -1.5138 3.9800 23 6 7.3419 -1.3314 4.2538 24 6 8.0872 -0.4350 3.5095 25 6 7.4921 0.2807 2.4896 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.5808 1.9902 -0.8229 32 1 0.6075 1.9900 1.5128 33 1 2.2404 1.6510 2.1347 34 1 3.0643 3.7261 1.0005 35 1 1.3961 4.0783 0.4891 36 1 1.8131 4.0679 2.2195 37 1 3.4865 1.1974 -2.3095 38 1 5.0158 0.6780 -1.5612 39 1 3.5566 -0.3275 -1.3940 40 1 9.1307 1.4586 -1.1993 41 1 4.3455 -0.9372 2.7547 42 1 5.4195 -2.2145 4.5633 43 1 7.8099 -1.8899 5.0509 44 1 9.1359 -0.2948 3.7262 45 1 8.0745 0.9807 1.9091 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000534133878.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:36 Heat of formation + Delta-G solvation = -14.685231 kcal Electronic energy + Delta-G solvation = -24865.146895 eV Core-core repulsion = 21654.498708 eV Total energy + Delta-G solvation = -3210.648187 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.03005 -39.78138 -37.65864 -36.77024 -34.14329 -33.07324 -32.57182 -31.61463 -30.41804 -27.20822 -27.08146 -25.07656 -23.41017 -23.36462 -22.79952 -21.56447 -20.56535 -19.23387 -17.90049 -17.62354 -17.05146 -16.31513 -15.92691 -15.75254 -15.57068 -15.29542 -15.03462 -14.81820 -14.69485 -14.42785 -14.31306 -13.95969 -13.82466 -13.36924 -13.09828 -13.03106 -12.84713 -12.76166 -12.61384 -12.47419 -12.37921 -12.20213 -11.95822 -11.84747 -11.70167 -11.46568 -11.21682 -10.99676 -10.94781 -10.55593 -9.78421 -9.67791 -8.73785 -8.55938 -6.35974 0.49094 0.61591 1.20961 1.26903 1.41400 1.90634 2.16035 2.52889 2.79838 3.19471 3.80873 3.97278 4.00855 4.15875 4.22197 4.28849 4.46209 4.49535 4.51744 4.59937 4.61113 4.70946 4.74217 4.80164 4.84629 4.91011 4.95767 5.01470 5.04459 5.06656 5.17525 5.23835 5.26809 5.31190 5.43461 5.49913 5.52004 5.55682 5.63890 5.66812 5.70356 5.75207 5.82697 6.06816 6.11153 6.47006 6.89928 7.33037 7.65734 8.50493 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.015718 B = 0.007252 C = 0.006081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.960290 B = 3860.143481 C = 4603.110610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.133 4.133 3 C -0.059 4.059 4 C -0.129 4.129 5 C -0.150 4.150 6 C -0.082 4.082 7 H 0.085 0.915 8 C -0.140 4.140 9 C 0.495 3.505 10 O -0.554 6.554 11 N -0.422 5.422 12 C -0.350 4.350 13 H 0.084 0.916 14 C 0.068 3.932 15 N -0.883 5.883 16 Si 0.893 3.107 17 H -0.276 1.276 18 H -0.277 1.277 19 H -0.248 1.248 20 C 0.148 3.852 21 C -0.203 4.203 22 C -0.104 4.104 23 C -0.165 4.165 24 C -0.109 4.109 25 C -0.185 4.185 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.060 0.940 29 H 0.057 0.943 30 H 0.066 0.934 31 H 0.087 0.913 32 H 0.073 0.927 33 H 0.058 0.942 34 H 0.035 0.965 35 H 0.068 0.932 36 H 0.052 0.948 37 H 0.082 0.918 38 H 0.049 0.951 39 H 0.055 0.945 40 H 0.282 0.718 41 H 0.164 0.836 42 H 0.144 0.856 43 H 0.148 0.852 44 H 0.138 0.862 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.927 -3.277 2.296 9.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.171 4.171 3 C -0.078 4.078 4 C -0.166 4.166 5 C -0.208 4.208 6 C -0.103 4.103 7 H 0.103 0.897 8 C -0.197 4.197 9 C 0.289 3.711 10 O -0.438 6.438 11 N -0.131 5.131 12 C -0.477 4.477 13 H 0.102 0.898 14 C -0.139 4.139 15 N -0.518 5.518 16 Si 0.717 3.283 17 H -0.203 1.203 18 H -0.203 1.203 19 H -0.172 1.172 20 C 0.052 3.948 21 C -0.223 4.223 22 C -0.123 4.123 23 C -0.184 4.184 24 C -0.128 4.128 25 C -0.205 4.205 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.105 0.895 32 H 0.091 0.909 33 H 0.076 0.924 34 H 0.054 0.946 35 H 0.087 0.913 36 H 0.071 0.929 37 H 0.101 0.899 38 H 0.068 0.932 39 H 0.074 0.926 40 H 0.092 0.908 41 H 0.181 0.819 42 H 0.161 0.839 43 H 0.166 0.834 44 H 0.156 0.844 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -9.115 -3.462 2.508 10.067 hybrid contribution 1.015 -0.365 -0.382 1.145 sum -8.099 -3.828 2.125 9.207 Atomic orbital electron populations 1.21746 0.94803 1.01503 1.01879 1.21835 0.96539 0.96305 1.02375 1.21010 0.91491 0.97019 0.98252 1.21785 1.01667 0.95163 0.97975 1.21804 1.00778 0.96434 1.01737 1.21105 0.96192 1.00191 0.92817 0.89660 1.21753 1.01996 0.99913 0.96034 1.21457 0.81483 0.80756 0.87367 1.90160 1.62374 1.45366 1.45863 1.41614 1.06364 1.40576 1.24587 1.18625 1.08740 0.95355 1.24994 0.89835 1.25660 0.94544 1.00193 0.93494 1.69780 1.08819 1.36989 1.36209 0.86598 0.78649 0.83700 0.79335 1.20253 1.20279 1.17154 1.18705 0.93140 0.93402 0.89593 1.22589 1.03642 0.97925 0.98166 1.21389 0.95325 0.98645 0.96928 1.21319 0.94371 1.00869 1.01812 1.21210 1.00479 0.96306 0.94757 1.21135 0.94581 1.03428 1.01391 0.92784 0.92682 0.92079 0.92485 0.91580 0.89491 0.90867 0.92392 0.94596 0.91334 0.92873 0.89918 0.93242 0.92615 0.90822 0.81907 0.83873 0.83386 0.84419 0.86617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.25 9.71 71.98 0.70 -2.55 16 2 C -0.13 -3.89 4.79 30.59 0.15 -3.74 16 3 C -0.06 -1.76 1.66 -10.80 -0.02 -1.78 16 4 C -0.13 -3.86 5.05 30.59 0.15 -3.71 16 5 C -0.15 -4.19 9.78 71.98 0.70 -3.49 16 6 C -0.08 -2.99 1.63 -11.54 -0.02 -3.01 16 7 H 0.09 3.26 5.91 -2.39 -0.01 3.25 16 8 C -0.14 -4.91 8.66 71.98 0.62 -4.28 16 9 C 0.50 21.41 6.12 87.66 0.54 21.95 16 10 O -0.55 -24.01 8.05 -3.03 -0.02 -24.04 16 11 N -0.42 -20.12 2.21 -458.91 -1.01 -21.14 16 12 C -0.35 -17.82 6.59 84.02 0.55 -17.27 16 13 H 0.08 4.55 7.45 -2.91 -0.02 4.53 16 14 C 0.07 3.52 3.63 84.91 0.31 3.83 16 15 N -0.88 -47.44 13.96 21.65 0.30 -47.14 16 16 Si 0.89 42.13 25.42 68.60 1.74 43.88 16 17 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 18 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 19 H -0.25 -12.05 5.16 99.48 0.51 -11.54 16 20 C 0.15 6.95 3.93 38.22 0.15 7.10 16 21 C -0.20 -8.75 8.90 22.41 0.20 -8.55 16 22 C -0.10 -3.71 10.04 22.25 0.22 -3.49 16 23 C -0.16 -5.46 10.04 22.30 0.22 -5.24 16 24 C -0.11 -4.08 10.04 22.25 0.22 -3.86 16 25 C -0.18 -8.39 6.54 22.41 0.15 -8.24 16 26 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.05 1.23 6.48 -2.39 -0.02 1.22 16 28 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.06 1.64 5.96 -2.39 -0.01 1.63 16 30 H 0.07 2.30 5.68 -2.38 -0.01 2.29 16 31 H 0.09 2.23 8.13 -2.39 -0.02 2.21 16 32 H 0.07 1.91 6.32 -2.39 -0.02 1.90 16 33 H 0.06 2.13 5.40 -2.38 -0.01 2.11 16 34 H 0.03 1.14 6.58 -2.39 -0.02 1.12 16 35 H 0.07 1.60 8.14 -2.38 -0.02 1.58 16 36 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 38 H 0.05 2.04 6.19 -2.39 -0.01 2.03 16 39 H 0.05 1.88 6.15 -2.38 -0.01 1.86 16 40 H 0.28 14.23 8.31 -92.71 -0.77 13.46 16 41 H 0.16 7.23 4.72 -46.26 -0.22 7.01 16 42 H 0.14 4.06 8.06 -2.91 -0.02 4.04 16 43 H 0.15 3.68 8.06 -2.91 -0.02 3.66 16 44 H 0.14 4.32 8.06 -2.91 -0.02 4.29 16 45 H 0.12 5.77 5.69 -2.91 -0.02 5.75 16 Total: -1.00 -57.05 329.95 6.44 -50.61 By element: Atomic # 1 Polarization: 33.56 SS G_CDS: 0.58 Total: 34.15 kcal Atomic # 6 Polarization: -41.18 SS G_CDS: 4.86 Total: -36.32 kcal Atomic # 7 Polarization: -67.56 SS G_CDS: -0.71 Total: -68.27 kcal Atomic # 8 Polarization: -24.01 SS G_CDS: -0.02 Total: -24.04 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 1.74 Total: 43.88 kcal Total: -57.05 6.44 -50.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000534133878.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.920 kcal (2) G-P(sol) polarization free energy of solvation -57.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds