Wall clock time and date at job start Tue Mar 31 2020 06:50:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47271 * 2 1 4 4 C 1.53005 * 109.47183 * 65.00111 * 3 2 1 5 5 C 1.52995 * 109.46947 * 57.81251 * 4 3 2 6 6 C 1.53002 * 109.47235 * 184.99971 * 3 2 1 7 7 H 1.08996 * 109.47155 * 302.29321 * 6 3 2 8 8 C 1.53002 * 109.46980 * 62.29555 * 6 3 2 9 9 C 1.50698 * 109.47076 * 182.29366 * 6 3 2 10 10 O 1.21281 * 120.00220 * 323.23539 * 9 6 3 11 11 N 1.34782 * 120.00021 * 143.23109 * 9 6 3 12 12 C 1.39237 * 120.00086 * 183.01272 * 11 9 6 13 13 C 1.39481 * 119.83325 * 323.94916 * 12 11 9 14 14 C 1.36376 * 120.16714 * 179.76511 * 13 12 11 15 15 C 1.40870 * 119.82800 * 0.50618 * 14 13 12 16 16 C 1.41156 * 120.16332 * 179.72289 * 15 14 13 17 17 H 1.07996 * 119.99696 * 202.99399 * 16 15 14 18 18 C 1.39905 * 119.99888 * 22.99324 * 16 15 14 19 19 N 1.30868 * 120.00081 * 21.57549 * 18 16 15 20 20 Si 1.86797 * 119.99972 * 201.57127 * 18 16 15 21 21 H 1.48500 * 109.47071 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.47252 * 120.00268 * 20 18 16 23 23 H 1.48501 * 109.47367 * 240.00702 * 20 18 16 24 24 C 1.40870 * 119.67286 * 359.75045 * 15 14 13 25 25 C 1.36380 * 119.82529 * 359.97438 * 24 15 14 26 26 H 1.08994 * 109.47063 * 299.99852 * 1 2 3 27 27 H 1.08995 * 109.46798 * 59.99950 * 1 2 3 28 28 H 1.08999 * 109.46875 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.47329 * 239.99734 * 2 1 3 30 30 H 1.09003 * 109.47121 * 120.00116 * 2 1 3 31 31 H 1.08998 * 109.47275 * 305.00145 * 3 2 1 32 32 H 1.08998 * 109.47254 * 177.81492 * 4 3 2 33 33 H 1.09000 * 109.46627 * 297.81083 * 4 3 2 34 34 H 1.09005 * 109.46739 * 181.27619 * 5 4 3 35 35 H 1.09001 * 109.47328 * 301.27654 * 5 4 3 36 36 H 1.08993 * 109.47296 * 61.28091 * 5 4 3 37 37 H 1.08998 * 109.47064 * 60.00335 * 8 6 3 38 38 H 1.08993 * 109.47382 * 299.99748 * 8 6 3 39 39 H 1.09002 * 109.46755 * 180.02562 * 8 6 3 40 40 H 0.97000 * 119.99821 * 3.02072 * 11 9 6 41 41 H 1.08002 * 119.91794 * 0.02562 * 13 12 11 42 42 H 1.08002 * 120.08661 * 180.25264 * 14 13 12 43 43 H 0.96994 * 120.00182 * 179.97438 * 19 18 16 44 44 H 1.07998 * 120.08715 * 179.97438 * 24 15 14 45 45 H 1.08001 * 119.91054 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6353 2.1265 1.3074 5 6 2.2000 1.3388 2.4912 6 6 3.5649 1.4443 -0.1257 7 1 3.9977 0.8707 0.6938 8 6 3.9674 0.8116 -1.4594 9 6 4.0719 2.8623 -0.0691 10 8 3.4350 3.7552 -0.5868 11 7 5.2331 3.1383 0.5570 12 6 5.6703 4.4559 0.6640 13 6 5.4408 5.3502 -0.3815 14 6 5.8619 6.6435 -0.2820 15 6 6.5395 7.0726 0.8761 16 6 6.9836 8.4081 0.9841 17 1 7.7939 8.6552 1.6540 18 6 6.3740 9.4117 0.2235 19 7 5.1669 9.2324 -0.2493 20 14 7.2830 11.0076 -0.1172 21 1 8.6218 10.9612 0.5235 22 1 7.4421 11.1835 -1.5832 23 1 6.5079 12.1468 0.4367 24 6 6.7723 6.1622 1.9255 25 6 6.3403 4.8734 1.8138 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6054 1.9815 -0.8418 32 1 2.0318 3.1417 1.3242 33 1 0.5481 2.1599 1.3785 34 1 1.8927 1.8134 3.4231 35 1 1.8213 0.3171 2.4616 36 1 3.2882 1.3247 2.4323 37 1 3.5346 1.3853 -2.2789 38 1 3.6007 -0.2140 -1.5004 39 1 5.0537 0.8125 -1.5487 40 1 5.7643 2.4190 0.9329 41 1 4.9247 5.0187 -1.2704 42 1 5.6799 7.3359 -1.0906 43 1 4.7442 9.9283 -0.7763 44 1 7.2915 6.4839 2.8162 45 1 6.5184 4.1742 2.6173 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000535589624.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:22 Heat of formation + Delta-G solvation = -45.179107 kcal Electronic energy + Delta-G solvation = -23203.496215 eV Core-core repulsion = 19991.525714 eV Total energy + Delta-G solvation = -3211.970501 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.08202 -37.91936 -36.66645 -34.37066 -32.99153 -32.12823 -31.26510 -29.45958 -28.92690 -26.43093 -25.36035 -23.61636 -23.29409 -21.36840 -20.88760 -19.54917 -18.70541 -17.30763 -16.85316 -16.28690 -15.61383 -15.31401 -15.03039 -14.13598 -14.08427 -13.90888 -13.79270 -13.04549 -12.99212 -12.94302 -12.64781 -12.31112 -12.22864 -12.01950 -11.88846 -11.82231 -11.58038 -11.51982 -11.34986 -11.12502 -10.96432 -10.88356 -10.50293 -10.42935 -10.33945 -10.21543 -9.92308 -9.76294 -9.35644 -8.96893 -8.57834 -7.48882 -7.01841 -6.74986 -4.25736 2.64179 3.02595 3.08584 3.13798 3.14590 3.42954 3.82387 3.94249 4.63551 4.65227 4.79382 4.82392 5.10121 5.19895 5.30002 5.35581 5.38893 5.45595 5.56855 5.59401 5.73318 5.75279 5.82081 5.87261 5.90276 6.00522 6.05729 6.09349 6.18210 6.23872 6.30123 6.41175 6.44242 6.55365 6.86836 7.03321 7.09553 7.18376 7.33605 7.62806 7.73066 8.02092 8.08162 8.26013 8.37608 8.65231 8.87222 8.90307 9.06334 10.17562 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.028875 B = 0.003383 C = 0.003325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.448020 B = 8274.864105 C = 8420.077231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.123 4.123 3 C -0.069 4.069 4 C -0.126 4.126 5 C -0.154 4.154 6 C -0.104 4.104 7 H 0.085 0.915 8 C -0.142 4.142 9 C 0.505 3.495 10 O -0.529 6.529 11 N -0.653 5.653 12 C -0.010 4.010 13 C -0.083 4.083 14 C -0.162 4.162 15 C 0.107 3.893 16 C -0.460 4.460 17 H 0.079 0.921 18 C 0.077 3.923 19 N -0.782 5.782 20 Si 0.905 3.095 21 H -0.260 1.260 22 H -0.271 1.271 23 H -0.275 1.275 24 C -0.219 4.219 25 C -0.102 4.102 26 H 0.056 0.944 27 H 0.053 0.947 28 H 0.050 0.950 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.063 0.937 34 H 0.051 0.949 35 H 0.055 0.945 36 H 0.053 0.947 37 H 0.063 0.937 38 H 0.066 0.934 39 H 0.057 0.943 40 H 0.392 0.608 41 H 0.103 0.897 42 H 0.117 0.883 43 H 0.281 0.719 44 H 0.094 0.906 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.435 -16.018 0.483 16.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.161 4.161 3 C -0.088 4.088 4 C -0.163 4.163 5 C -0.211 4.211 6 C -0.126 4.126 7 H 0.103 0.897 8 C -0.200 4.200 9 C 0.292 3.708 10 O -0.405 6.405 11 N -0.296 5.296 12 C -0.102 4.102 13 C -0.103 4.103 14 C -0.182 4.182 15 C 0.104 3.896 16 C -0.489 4.489 17 H 0.097 0.903 18 C -0.142 4.142 19 N -0.407 5.407 20 Si 0.729 3.271 21 H -0.183 1.183 22 H -0.196 1.196 23 H -0.200 1.200 24 C -0.239 4.239 25 C -0.122 4.122 26 H 0.075 0.925 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.099 0.901 32 H 0.089 0.911 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.076 0.924 40 H 0.225 0.775 41 H 0.121 0.879 42 H 0.134 0.866 43 H 0.092 0.908 44 H 0.112 0.888 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -5.108 -15.262 -0.014 16.094 hybrid contribution 0.580 0.454 0.134 0.748 sum -4.528 -14.808 0.120 15.485 Atomic orbital electron populations 1.21798 0.95935 1.01148 1.02112 1.21706 0.95940 0.96379 1.02038 1.21023 0.92618 0.96022 0.99124 1.21616 1.00769 1.00178 0.93778 1.21879 1.01068 1.00062 0.98115 1.21356 0.97427 0.94028 0.99801 0.89725 1.21779 1.01516 1.00697 0.95997 1.20499 0.80592 0.90564 0.79180 1.90694 1.57007 1.47692 1.45122 1.43068 1.21680 1.07765 1.57055 1.17167 1.11418 0.84147 0.97484 1.20488 0.99213 0.93910 0.96660 1.20942 1.04210 0.94104 0.98919 1.17652 0.89186 0.92725 0.90034 1.19566 1.16123 0.91885 1.21350 0.90322 1.25946 0.93916 1.00670 0.93713 1.69892 1.10903 1.34415 1.25445 0.86324 0.80866 0.80836 0.79085 1.18341 1.19649 1.20004 1.20511 1.10365 0.93824 0.99203 1.20052 1.01533 0.96041 0.94606 0.92458 0.92751 0.93116 0.91790 0.91626 0.90076 0.91069 0.91878 0.93033 0.92591 0.92800 0.91836 0.91524 0.92383 0.77539 0.87857 0.86554 0.90789 0.88761 0.89371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.67 37.16 0.36 -0.97 16 2 C -0.12 -1.13 4.97 -26.73 -0.13 -1.27 16 3 C -0.07 -0.83 1.42 -90.62 -0.13 -0.96 16 4 C -0.13 -1.64 5.16 -26.73 -0.14 -1.78 16 5 C -0.15 -1.70 9.21 37.16 0.34 -1.36 16 6 C -0.10 -1.30 1.94 -91.77 -0.18 -1.48 16 7 H 0.08 0.89 6.59 -51.93 -0.34 0.55 16 8 C -0.14 -1.55 8.88 37.16 0.33 -1.22 16 9 C 0.51 8.90 5.48 -10.98 -0.06 8.83 16 10 O -0.53 -11.73 13.26 5.56 0.07 -11.66 16 11 N -0.65 -11.65 5.30 -9.74 -0.05 -11.70 16 12 C -0.01 -0.23 6.28 -83.57 -0.53 -0.75 16 13 C -0.08 -2.10 8.60 -39.79 -0.34 -2.44 16 14 C -0.16 -4.40 8.66 -39.26 -0.34 -4.74 16 15 C 0.11 2.90 5.58 -106.80 -0.60 2.30 16 16 C -0.46 -12.34 9.02 -37.85 -0.34 -12.68 16 17 H 0.08 2.02 7.93 -52.49 -0.42 1.60 16 18 C 0.08 1.95 5.06 -17.34 -0.09 1.87 16 19 N -0.78 -20.81 11.08 55.55 0.62 -20.20 16 20 Si 0.90 18.81 29.61 -169.99 -5.03 13.77 16 21 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 22 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 23 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 24 C -0.22 -5.39 9.74 -39.26 -0.38 -5.77 16 25 C -0.10 -2.28 9.90 -39.79 -0.39 -2.67 16 26 H 0.06 0.51 6.61 -51.93 -0.34 0.17 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.54 6.25 -51.92 -0.32 0.22 16 30 H 0.07 0.56 6.09 -51.93 -0.32 0.24 16 31 H 0.08 1.14 7.94 -51.93 -0.41 0.73 16 32 H 0.07 1.20 6.65 -51.93 -0.35 0.85 16 33 H 0.06 0.76 6.67 -51.93 -0.35 0.41 16 34 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.52 6.21 -51.93 -0.32 0.19 16 36 H 0.05 0.60 6.60 -51.93 -0.34 0.26 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.07 0.57 6.38 -51.93 -0.33 0.24 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.39 5.50 8.79 -40.82 -0.36 5.14 16 41 H 0.10 2.64 6.32 -52.49 -0.33 2.31 16 42 H 0.12 3.28 6.18 -52.49 -0.32 2.96 16 43 H 0.28 6.78 8.30 -40.82 -0.34 6.44 16 44 H 0.09 2.16 8.06 -52.49 -0.42 1.74 16 45 H 0.09 1.67 8.06 -52.49 -0.42 1.25 16 LS Contribution 350.48 15.07 5.28 5.28 Total: -1.00 -30.21 350.48 -8.68 -38.89 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: -6.95 Total: 10.70 kcal Atomic # 6 Polarization: -22.48 SS G_CDS: -2.62 Total: -25.09 kcal Atomic # 7 Polarization: -32.46 SS G_CDS: 0.56 Total: -31.90 kcal Atomic # 8 Polarization: -11.73 SS G_CDS: 0.07 Total: -11.66 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -5.03 Total: 13.77 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.21 -8.68 -38.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000535589624.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.287 kcal (2) G-P(sol) polarization free energy of solvation -30.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds