Wall clock time and date at job start Tue Mar 31 2020 06:50:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47079 * 2 1 4 4 C 1.53007 * 109.47097 * 303.79380 * 3 2 1 5 5 C 1.53001 * 109.46968 * 295.87877 * 4 3 2 6 6 C 1.53007 * 109.47128 * 63.79022 * 3 2 1 7 7 H 1.09002 * 109.46650 * 300.00188 * 6 3 2 8 8 C 1.52995 * 109.47237 * 180.02562 * 6 3 2 9 9 C 1.50699 * 109.46782 * 59.99904 * 6 3 2 10 10 O 1.21277 * 120.00376 * 359.97438 * 9 6 3 11 11 N 1.34783 * 119.99579 * 180.02562 * 9 6 3 12 12 C 1.39234 * 119.99739 * 175.46724 * 11 9 6 13 13 C 1.39480 * 119.83543 * 37.04848 * 12 11 9 14 14 C 1.36374 * 120.17145 * 180.23673 * 13 12 11 15 15 C 1.40870 * 119.82531 * 359.49379 * 14 13 12 16 16 C 1.41153 * 120.16357 * 180.25544 * 15 14 13 17 17 H 1.08002 * 120.00045 * 31.49139 * 16 15 14 18 18 C 1.39902 * 120.00058 * 211.48776 * 16 15 14 19 19 N 1.30872 * 119.99864 * 8.26788 * 18 16 15 20 20 Si 1.86803 * 120.00118 * 188.26811 * 18 16 15 21 21 H 1.48492 * 109.47240 * 59.99841 * 20 18 16 22 22 H 1.48505 * 109.47080 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.46858 * 299.99868 * 20 18 16 24 24 C 1.40873 * 119.67414 * 0.50303 * 15 14 13 25 25 C 1.36378 * 119.82503 * 359.75087 * 24 15 14 26 26 H 1.09005 * 109.47129 * 65.51647 * 1 2 3 27 27 H 1.08997 * 109.47274 * 185.51505 * 1 2 3 28 28 H 1.09000 * 109.47661 * 305.52158 * 1 2 3 29 29 H 1.09001 * 109.46763 * 240.00277 * 2 1 3 30 30 H 1.08994 * 109.47082 * 120.00074 * 2 1 3 31 31 H 1.08994 * 109.47308 * 183.79278 * 3 2 1 32 32 H 1.08996 * 109.47223 * 55.87688 * 4 3 2 33 33 H 1.08997 * 109.47035 * 175.88058 * 4 3 2 34 34 H 1.08992 * 109.47247 * 185.46670 * 5 4 3 35 35 H 1.09007 * 109.46877 * 305.46679 * 5 4 3 36 36 H 1.08994 * 109.47027 * 65.46090 * 5 4 3 37 37 H 1.08994 * 109.47288 * 179.97438 * 8 6 3 38 38 H 1.09007 * 109.46809 * 300.00145 * 8 6 3 39 39 H 1.08999 * 109.47024 * 59.99650 * 8 6 3 40 40 H 0.96997 * 120.00204 * 355.46266 * 11 9 6 41 41 H 1.08005 * 119.91927 * 359.95393 * 13 12 11 42 42 H 1.08004 * 120.08808 * 179.75001 * 14 13 12 43 43 H 0.97000 * 120.00040 * 180.02562 * 19 18 16 44 44 H 1.07992 * 120.08947 * 179.73221 * 24 15 14 45 45 H 1.07995 * 119.91170 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4535 2.1908 -1.1988 5 6 1.9670 1.5600 -2.4947 6 6 1.6093 2.1357 1.2942 7 1 0.5214 2.1349 1.3621 8 6 2.1187 3.5784 1.2940 9 6 2.1869 1.3987 2.4750 10 8 2.8748 0.4155 2.2988 11 7 1.9381 1.8316 3.7269 12 6 2.3919 1.0983 4.8201 13 6 3.6297 0.4581 4.7606 14 6 4.0788 -0.2659 5.8255 15 6 3.2938 -0.3572 6.9916 16 6 3.7541 -1.1002 8.1001 17 1 4.8128 -1.1687 8.3021 18 6 2.8389 -1.7477 8.9369 19 7 1.5740 -1.8020 8.6055 20 14 3.4223 -2.5348 10.5274 21 1 4.0331 -1.4982 11.3977 22 1 2.2669 -3.1516 11.2274 23 1 4.4308 -3.5810 10.2211 24 6 2.0448 0.2922 7.0443 25 6 1.6068 1.0082 5.9694 26 1 -0.3634 0.4259 -0.9353 27 1 -0.3634 -1.0229 0.0988 28 1 -0.3634 0.5971 0.8364 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 3.1278 1.4433 -0.0680 32 1 0.3658 2.1274 -1.1700 33 1 1.7577 3.2367 -1.1585 34 1 1.6283 2.1509 -3.3456 35 1 3.0567 1.5356 -2.4800 36 1 1.5821 0.5440 -2.5815 37 1 1.8115 4.0724 2.2157 38 1 3.2067 3.5795 1.2258 39 1 1.7007 4.1112 0.4399 40 1 1.4429 2.6539 3.8664 41 1 4.2320 0.5320 3.8672 42 1 5.0356 -0.7644 5.7765 43 1 0.9394 -2.2506 9.1859 44 1 1.4356 0.2230 7.9333 45 1 0.6493 1.5063 6.0081 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000535589625.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:25 Heat of formation + Delta-G solvation = -42.155642 kcal Electronic energy + Delta-G solvation = -23108.558152 eV Core-core repulsion = 19896.718758 eV Total energy + Delta-G solvation = -3211.839393 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.16668 -37.94627 -36.63912 -34.40293 -33.13646 -32.05932 -31.16271 -29.54899 -28.79806 -26.40435 -25.30519 -23.65549 -23.28394 -21.49783 -20.75025 -19.56955 -18.80975 -17.31970 -16.89216 -16.26673 -15.52694 -15.18432 -15.13966 -14.36088 -14.14657 -13.95272 -13.71190 -13.07498 -12.95220 -12.83065 -12.65894 -12.37683 -12.14498 -12.09577 -11.81815 -11.75433 -11.57941 -11.44710 -11.28177 -11.11166 -11.02488 -10.94935 -10.75284 -10.38437 -10.35202 -10.15211 -9.89579 -9.48588 -9.32569 -9.01182 -8.70723 -7.52723 -6.89438 -6.66224 -4.30906 2.60805 3.06240 3.08332 3.11063 3.11887 3.38695 3.78565 3.97141 4.64764 4.68837 4.81670 4.83583 5.07154 5.18922 5.26690 5.37042 5.44258 5.48919 5.52922 5.60732 5.70185 5.77734 5.80486 5.87815 5.91393 6.01970 6.04271 6.10718 6.21122 6.26989 6.34854 6.45011 6.50581 6.70247 6.83709 6.97900 7.08230 7.23312 7.31201 7.63120 7.76688 7.91399 8.06246 8.30981 8.32604 8.62595 8.83033 8.91995 9.02900 10.27250 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.033829 B = 0.003188 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.492235 B = 8781.935542 C = 8942.740838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.135 4.135 3 C -0.064 4.064 4 C -0.125 4.125 5 C -0.151 4.151 6 C -0.109 4.109 7 H 0.095 0.905 8 C -0.146 4.146 9 C 0.504 3.496 10 O -0.526 6.526 11 N -0.653 5.653 12 C 0.000 4.000 13 C -0.080 4.080 14 C -0.211 4.211 15 C 0.105 3.895 16 C -0.462 4.462 17 H 0.076 0.924 18 C 0.072 3.928 19 N -0.806 5.806 20 Si 0.912 3.088 21 H -0.265 1.265 22 H -0.279 1.279 23 H -0.266 1.266 24 C -0.144 4.144 25 C -0.118 4.118 26 H 0.050 0.950 27 H 0.049 0.951 28 H 0.051 0.949 29 H 0.057 0.943 30 H 0.094 0.906 31 H 0.074 0.926 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.049 0.951 35 H 0.053 0.947 36 H 0.056 0.944 37 H 0.058 0.942 38 H 0.060 0.940 39 H 0.067 0.933 40 H 0.393 0.607 41 H 0.105 0.895 42 H 0.095 0.905 43 H 0.279 0.721 44 H 0.122 0.878 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.509 8.711 -13.868 16.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.172 4.172 3 C -0.082 4.082 4 C -0.162 4.162 5 C -0.209 4.209 6 C -0.130 4.130 7 H 0.112 0.888 8 C -0.204 4.204 9 C 0.291 3.709 10 O -0.403 6.403 11 N -0.296 5.296 12 C -0.092 4.092 13 C -0.099 4.099 14 C -0.231 4.231 15 C 0.103 3.897 16 C -0.492 4.492 17 H 0.094 0.906 18 C -0.144 4.144 19 N -0.432 5.432 20 Si 0.737 3.263 21 H -0.190 1.190 22 H -0.204 1.204 23 H -0.191 1.191 24 C -0.164 4.164 25 C -0.138 4.138 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.113 0.887 31 H 0.093 0.907 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.086 0.914 40 H 0.227 0.773 41 H 0.123 0.877 42 H 0.113 0.887 43 H 0.090 0.910 44 H 0.140 0.860 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.260 7.896 -13.926 16.337 hybrid contribution -0.230 -0.068 0.816 0.850 sum -3.491 7.828 -13.111 15.664 Atomic orbital electron populations 1.21876 0.96809 1.01320 1.01030 1.21828 0.95190 0.96314 1.03866 1.20945 1.00661 0.94929 0.91708 1.21717 1.00812 0.99325 0.94344 1.21780 1.01196 1.00943 0.96937 1.21414 1.01686 0.95871 0.94034 0.88751 1.21849 1.01942 0.94304 1.02284 1.20546 0.81490 0.84853 0.84030 1.90609 1.37951 1.26719 1.85028 1.43047 1.56056 1.25561 1.04923 1.17222 0.96065 1.07342 0.88615 1.20350 0.93769 0.98101 0.97721 1.20750 1.01885 1.06463 0.93977 1.17675 0.91512 0.89184 0.91354 1.19489 0.94418 1.27103 1.08210 0.90584 1.25882 0.94507 0.95250 0.98771 1.69792 1.03051 1.34514 1.35861 0.86307 0.79029 0.79754 0.81214 1.18961 1.20414 1.19087 1.20943 0.98848 0.98562 0.98076 1.20276 0.97249 1.01921 0.94343 0.93067 0.93175 0.92970 0.92470 0.88745 0.90721 0.91690 0.91928 0.93198 0.92802 0.92521 0.92291 0.92094 0.91416 0.77340 0.87739 0.88712 0.90991 0.86018 0.89229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 9.14 37.16 0.34 -1.44 16 2 C -0.13 -1.78 5.08 -26.73 -0.14 -1.92 16 3 C -0.06 -0.75 1.40 -90.61 -0.13 -0.88 16 4 C -0.12 -1.14 4.85 -26.73 -0.13 -1.27 16 5 C -0.15 -1.31 9.51 37.16 0.35 -0.96 16 6 C -0.11 -1.31 2.06 -91.77 -0.19 -1.50 16 7 H 0.09 1.03 6.41 -51.93 -0.33 0.70 16 8 C -0.15 -1.42 8.74 37.16 0.32 -1.10 16 9 C 0.50 8.56 6.67 -10.98 -0.07 8.49 16 10 O -0.53 -10.95 11.19 5.56 0.06 -10.89 16 11 N -0.65 -11.43 5.22 -9.74 -0.05 -11.48 16 12 C 0.00 0.00 6.27 -83.57 -0.52 -0.53 16 13 C -0.08 -1.92 8.60 -39.79 -0.34 -2.26 16 14 C -0.21 -5.40 9.74 -39.26 -0.38 -5.78 16 15 C 0.11 2.85 5.53 -106.80 -0.59 2.25 16 16 C -0.46 -12.40 9.04 -37.85 -0.34 -12.75 16 17 H 0.08 1.96 7.86 -52.49 -0.41 1.55 16 18 C 0.07 1.83 5.28 -17.34 -0.09 1.74 16 19 N -0.81 -21.12 10.87 55.55 0.60 -20.52 16 20 Si 0.91 18.97 29.57 -169.99 -5.03 13.95 16 21 H -0.26 -5.42 7.11 56.52 0.40 -5.01 16 22 H -0.28 -5.66 7.11 56.52 0.40 -5.25 16 23 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 24 C -0.14 -3.73 8.59 -39.26 -0.34 -4.07 16 25 C -0.12 -2.70 9.90 -39.79 -0.39 -3.10 16 26 H 0.05 0.50 6.60 -51.93 -0.34 0.16 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.05 0.62 6.28 -51.93 -0.33 0.29 16 29 H 0.06 0.70 6.86 -51.93 -0.36 0.35 16 30 H 0.09 1.61 5.43 -51.93 -0.28 1.33 16 31 H 0.07 0.99 8.10 -51.93 -0.42 0.57 16 32 H 0.06 0.57 6.25 -51.93 -0.32 0.24 16 33 H 0.06 0.52 6.22 -51.93 -0.32 0.19 16 34 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.50 6.90 -51.93 -0.36 0.15 16 37 H 0.06 0.53 7.47 -51.93 -0.39 0.14 16 38 H 0.06 0.64 8.14 -51.92 -0.42 0.22 16 39 H 0.07 0.53 6.34 -51.93 -0.33 0.20 16 40 H 0.39 5.48 8.12 -40.82 -0.33 5.14 16 41 H 0.10 2.48 6.35 -52.48 -0.33 2.15 16 42 H 0.09 2.32 8.06 -52.48 -0.42 1.89 16 43 H 0.28 6.70 8.30 -40.82 -0.34 6.37 16 44 H 0.12 3.23 6.31 -52.49 -0.33 2.90 16 45 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 LS Contribution 347.05 15.07 5.23 5.23 Total: -1.00 -29.38 347.05 -8.69 -38.07 By element: Atomic # 1 Polarization: 17.56 SS G_CDS: -6.86 Total: 10.70 kcal Atomic # 6 Polarization: -22.42 SS G_CDS: -2.64 Total: -25.06 kcal Atomic # 7 Polarization: -32.55 SS G_CDS: 0.55 Total: -32.00 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: 0.06 Total: -10.89 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -5.03 Total: 13.95 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -29.38 -8.69 -38.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000535589625.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.088 kcal (2) G-P(sol) polarization free energy of solvation -29.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds