Wall clock time and date at job start Tue Mar 31 2020 06:50:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47079 * 2 1 4 4 C 1.53007 * 109.47097 * 303.79380 * 3 2 1 5 5 C 1.53001 * 109.46968 * 295.87877 * 4 3 2 6 6 C 1.53007 * 109.47128 * 63.79022 * 3 2 1 7 7 H 1.09002 * 109.46650 * 300.00188 * 6 3 2 8 8 C 1.52995 * 109.47237 * 180.02562 * 6 3 2 9 9 C 1.50699 * 109.46782 * 59.99904 * 6 3 2 10 10 O 1.21277 * 120.00376 * 359.97438 * 9 6 3 11 11 N 1.34783 * 119.99579 * 180.02562 * 9 6 3 12 12 C 1.39234 * 119.99739 * 175.46724 * 11 9 6 13 13 C 1.39480 * 119.83543 * 37.04848 * 12 11 9 14 14 C 1.36374 * 120.17145 * 180.23673 * 13 12 11 15 15 C 1.40870 * 119.82531 * 359.49379 * 14 13 12 16 16 C 1.41153 * 120.16357 * 180.25544 * 15 14 13 17 17 H 1.08002 * 120.00045 * 31.49139 * 16 15 14 18 18 C 1.39902 * 120.00058 * 211.48776 * 16 15 14 19 19 N 1.30872 * 119.99864 * 8.26788 * 18 16 15 20 20 Si 1.86803 * 120.00118 * 188.26811 * 18 16 15 21 21 H 1.48492 * 109.47240 * 59.99841 * 20 18 16 22 22 H 1.48505 * 109.47080 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.46858 * 299.99868 * 20 18 16 24 24 C 1.40873 * 119.67414 * 0.50303 * 15 14 13 25 25 C 1.36378 * 119.82503 * 359.75087 * 24 15 14 26 26 H 1.09005 * 109.47129 * 65.51647 * 1 2 3 27 27 H 1.08997 * 109.47274 * 185.51505 * 1 2 3 28 28 H 1.09000 * 109.47661 * 305.52158 * 1 2 3 29 29 H 1.09001 * 109.46763 * 240.00277 * 2 1 3 30 30 H 1.08994 * 109.47082 * 120.00074 * 2 1 3 31 31 H 1.08994 * 109.47308 * 183.79278 * 3 2 1 32 32 H 1.08996 * 109.47223 * 55.87688 * 4 3 2 33 33 H 1.08997 * 109.47035 * 175.88058 * 4 3 2 34 34 H 1.08992 * 109.47247 * 185.46670 * 5 4 3 35 35 H 1.09007 * 109.46877 * 305.46679 * 5 4 3 36 36 H 1.08994 * 109.47027 * 65.46090 * 5 4 3 37 37 H 1.08994 * 109.47288 * 179.97438 * 8 6 3 38 38 H 1.09007 * 109.46809 * 300.00145 * 8 6 3 39 39 H 1.08999 * 109.47024 * 59.99650 * 8 6 3 40 40 H 0.96997 * 120.00204 * 355.46266 * 11 9 6 41 41 H 1.08005 * 119.91927 * 359.95393 * 13 12 11 42 42 H 1.08004 * 120.08808 * 179.75001 * 14 13 12 43 43 H 0.97000 * 120.00040 * 180.02562 * 19 18 16 44 44 H 1.07992 * 120.08947 * 179.73221 * 24 15 14 45 45 H 1.07995 * 119.91170 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4535 2.1908 -1.1988 5 6 1.9670 1.5600 -2.4947 6 6 1.6093 2.1357 1.2942 7 1 0.5214 2.1349 1.3621 8 6 2.1187 3.5784 1.2940 9 6 2.1869 1.3987 2.4750 10 8 2.8748 0.4155 2.2988 11 7 1.9381 1.8316 3.7269 12 6 2.3919 1.0983 4.8201 13 6 3.6297 0.4581 4.7606 14 6 4.0788 -0.2659 5.8255 15 6 3.2938 -0.3572 6.9916 16 6 3.7541 -1.1002 8.1001 17 1 4.8128 -1.1687 8.3021 18 6 2.8389 -1.7477 8.9369 19 7 1.5740 -1.8020 8.6055 20 14 3.4223 -2.5348 10.5274 21 1 4.0331 -1.4982 11.3977 22 1 2.2669 -3.1516 11.2274 23 1 4.4308 -3.5810 10.2211 24 6 2.0448 0.2922 7.0443 25 6 1.6068 1.0082 5.9694 26 1 -0.3634 0.4259 -0.9353 27 1 -0.3634 -1.0229 0.0988 28 1 -0.3634 0.5971 0.8364 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 3.1278 1.4433 -0.0680 32 1 0.3658 2.1274 -1.1700 33 1 1.7577 3.2367 -1.1585 34 1 1.6283 2.1509 -3.3456 35 1 3.0567 1.5356 -2.4800 36 1 1.5821 0.5440 -2.5815 37 1 1.8115 4.0724 2.2157 38 1 3.2067 3.5795 1.2258 39 1 1.7007 4.1112 0.4399 40 1 1.4429 2.6539 3.8664 41 1 4.2320 0.5320 3.8672 42 1 5.0356 -0.7644 5.7765 43 1 0.9394 -2.2506 9.1859 44 1 1.4356 0.2230 7.9333 45 1 0.6493 1.5063 6.0081 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000535589625.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:24 Heat of formation + Delta-G solvation = -57.402500 kcal Electronic energy + Delta-G solvation = -23109.219305 eV Core-core repulsion = 19896.718758 eV Total energy + Delta-G solvation = -3212.500547 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.54464 -39.52020 -38.00513 -36.11133 -34.82181 -33.18177 -32.00478 -31.47064 -30.63980 -27.29125 -27.00449 -24.89898 -24.18313 -23.27852 -22.51107 -21.01258 -19.87995 -19.25426 -18.32794 -17.76520 -17.04421 -16.45169 -16.38210 -15.71432 -15.53592 -15.37343 -14.94406 -14.55396 -14.47816 -13.98696 -13.82542 -13.70754 -13.64249 -13.30392 -13.23544 -13.01954 -12.84688 -12.78407 -12.60325 -12.52805 -12.44638 -12.21315 -11.83866 -11.73939 -11.44891 -11.31607 -11.25145 -11.18381 -11.05486 -10.70102 -10.23525 -9.47499 -8.78180 -8.55688 -6.31618 0.81338 1.12565 1.38611 1.46940 1.50616 1.86208 2.22581 2.41072 2.78472 3.66736 3.72028 3.80067 3.93223 4.18350 4.37019 4.38642 4.42184 4.46076 4.51922 4.53302 4.61731 4.71463 4.85313 4.91417 4.94433 5.00734 5.06071 5.12443 5.13083 5.14846 5.17263 5.25275 5.32797 5.36121 5.41160 5.43047 5.45660 5.58919 5.66952 5.73030 5.91022 6.03559 6.12270 6.38152 6.65236 6.78670 6.94031 6.99200 7.48482 8.39047 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.033829 B = 0.003188 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.492235 B = 8781.935542 C = 8942.740838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.135 4.135 3 C -0.061 4.061 4 C -0.117 4.117 5 C -0.153 4.153 6 C -0.097 4.097 7 H 0.117 0.883 8 C -0.144 4.144 9 C 0.499 3.501 10 O -0.567 6.567 11 N -0.648 5.648 12 C 0.018 3.982 13 C -0.091 4.091 14 C -0.228 4.228 15 C 0.073 3.927 16 C -0.500 4.500 17 H 0.073 0.927 18 C 0.031 3.969 19 N -0.837 5.837 20 Si 0.986 3.014 21 H -0.258 1.258 22 H -0.267 1.267 23 H -0.264 1.264 24 C -0.161 4.161 25 C -0.117 4.117 26 H 0.075 0.925 27 H 0.042 0.958 28 H 0.051 0.949 29 H 0.060 0.940 30 H 0.050 0.950 31 H 0.053 0.947 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.066 0.934 35 H 0.046 0.954 36 H 0.050 0.950 37 H 0.070 0.930 38 H 0.048 0.952 39 H 0.097 0.903 40 H 0.415 0.585 41 H 0.104 0.896 42 H 0.092 0.908 43 H 0.287 0.713 44 H 0.110 0.890 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.124 10.512 -15.084 19.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.172 4.172 3 C -0.080 4.080 4 C -0.154 4.154 5 C -0.210 4.210 6 C -0.118 4.118 7 H 0.134 0.866 8 C -0.201 4.201 9 C 0.289 3.711 10 O -0.446 6.446 11 N -0.293 5.293 12 C -0.076 4.076 13 C -0.111 4.111 14 C -0.248 4.248 15 C 0.071 3.929 16 C -0.531 4.531 17 H 0.091 0.909 18 C -0.182 4.182 19 N -0.464 5.464 20 Si 0.807 3.193 21 H -0.182 1.182 22 H -0.191 1.191 23 H -0.189 1.189 24 C -0.181 4.181 25 C -0.137 4.137 26 H 0.094 0.906 27 H 0.061 0.939 28 H 0.070 0.930 29 H 0.078 0.922 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.096 0.904 33 H 0.098 0.902 34 H 0.085 0.915 35 H 0.065 0.935 36 H 0.069 0.931 37 H 0.089 0.911 38 H 0.068 0.932 39 H 0.115 0.885 40 H 0.252 0.748 41 H 0.122 0.878 42 H 0.111 0.889 43 H 0.097 0.903 44 H 0.128 0.872 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -4.893 9.740 -15.171 18.681 hybrid contribution 0.266 -0.592 1.012 1.202 sum -4.627 9.148 -14.159 17.481 Atomic orbital electron populations 1.21850 0.95261 1.01197 1.02303 1.21751 0.96532 0.97093 1.01868 1.20931 0.99595 0.94426 0.93076 1.21684 1.01299 0.99676 0.92756 1.21791 1.00793 1.00981 0.97426 1.21452 1.02520 0.96620 0.91232 0.86570 1.21885 1.01349 0.92547 1.04329 1.21575 0.80377 0.84398 0.84795 1.90616 1.39674 1.28667 1.85620 1.43018 1.56201 1.26076 1.03986 1.17286 0.94844 1.05784 0.89653 1.20453 0.94853 0.98659 0.97160 1.20873 1.02095 1.07356 0.94475 1.17985 0.92582 0.90278 0.92049 1.19727 0.94773 1.28860 1.09690 0.90910 1.26735 0.94394 0.95243 1.01845 1.69849 1.04116 1.35237 1.37203 0.85190 0.78745 0.78748 0.76602 1.18219 1.19116 1.18871 1.20946 0.98666 0.99682 0.98816 1.20539 0.98418 1.01153 0.93550 0.90576 0.93905 0.92977 0.92155 0.93098 0.92803 0.90433 0.90247 0.91498 0.93533 0.93066 0.91078 0.93238 0.88470 0.74827 0.87826 0.88928 0.90285 0.87181 0.85854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.17 9.14 71.98 0.66 -2.52 16 2 C -0.14 -3.50 5.08 30.59 0.16 -3.34 16 3 C -0.06 -1.34 1.40 -10.79 -0.02 -1.36 16 4 C -0.12 -1.73 4.85 30.60 0.15 -1.58 16 5 C -0.15 -2.24 9.51 71.98 0.68 -1.56 16 6 C -0.10 -2.10 2.06 -11.54 -0.02 -2.12 16 7 H 0.12 2.08 6.41 -2.39 -0.02 2.07 16 8 C -0.14 -2.28 8.74 71.98 0.63 -1.65 16 9 C 0.50 16.50 6.67 87.66 0.58 17.08 16 10 O -0.57 -24.07 11.19 -3.02 -0.03 -24.10 16 11 N -0.65 -21.63 5.22 -303.11 -1.58 -23.21 16 12 C 0.02 0.79 6.27 38.57 0.24 1.04 16 13 C -0.09 -4.52 8.60 22.13 0.19 -4.33 16 14 C -0.23 -12.23 9.74 22.48 0.22 -12.01 16 15 C 0.07 4.13 5.53 -21.27 -0.12 4.02 16 16 C -0.50 -27.97 9.04 23.39 0.21 -27.76 16 17 H 0.07 3.93 7.86 -2.91 -0.02 3.91 16 18 C 0.03 1.59 5.28 85.24 0.45 2.04 16 19 N -0.84 -44.81 10.87 21.82 0.24 -44.57 16 20 Si 0.99 39.33 29.57 68.60 2.03 41.36 16 21 H -0.26 -9.91 7.11 99.48 0.71 -9.21 16 22 H -0.27 -10.01 7.11 99.48 0.71 -9.30 16 23 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 24 C -0.16 -8.53 8.59 22.48 0.19 -8.34 16 25 C -0.12 -5.30 9.90 22.14 0.22 -5.08 16 26 H 0.08 1.24 6.60 -2.38 -0.02 1.22 16 27 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.05 1.10 6.28 -2.39 -0.01 1.08 16 29 H 0.06 1.47 6.86 -2.39 -0.02 1.46 16 30 H 0.05 1.79 5.43 -2.39 -0.01 1.77 16 31 H 0.05 1.41 8.10 -2.39 -0.02 1.39 16 32 H 0.08 0.99 6.25 -2.39 -0.01 0.98 16 33 H 0.08 0.94 6.22 -2.39 -0.01 0.93 16 34 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.05 0.75 8.14 -2.38 -0.02 0.73 16 36 H 0.05 0.80 6.90 -2.39 -0.02 0.79 16 37 H 0.07 0.98 7.47 -2.39 -0.02 0.96 16 38 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 39 H 0.10 1.03 6.34 -2.39 -0.02 1.01 16 40 H 0.41 10.31 8.12 -92.71 -0.75 9.56 16 41 H 0.10 5.10 6.35 -2.91 -0.02 5.08 16 42 H 0.09 4.81 8.06 -2.91 -0.02 4.79 16 43 H 0.29 13.91 8.30 -92.71 -0.77 13.14 16 44 H 0.11 6.02 6.31 -2.91 -0.02 6.00 16 45 H 0.12 4.70 8.06 -2.91 -0.02 4.67 16 Total: -1.00 -67.34 347.05 5.32 -62.03 By element: Atomic # 1 Polarization: 35.72 SS G_CDS: 0.24 Total: 35.96 kcal Atomic # 6 Polarization: -51.89 SS G_CDS: 4.43 Total: -47.46 kcal Atomic # 7 Polarization: -66.44 SS G_CDS: -1.34 Total: -67.78 kcal Atomic # 8 Polarization: -24.07 SS G_CDS: -0.03 Total: -24.10 kcal Atomic # 14 Polarization: 39.33 SS G_CDS: 2.03 Total: 41.36 kcal Total: -67.34 5.32 -62.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000535589625.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.623 kcal (2) G-P(sol) polarization free energy of solvation -67.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds