Wall clock time and date at job start Tue Mar 31 2020 06:56:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47181 * 2 1 4 4 C 1.53007 * 109.46917 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.46980 * 179.97438 * 4 3 2 6 6 H 1.09000 * 109.47229 * 305.00088 * 5 4 3 7 7 C 1.53000 * 109.46962 * 64.99835 * 5 4 3 8 8 C 1.52997 * 109.47237 * 183.75806 * 7 5 4 9 9 C 1.50691 * 109.47150 * 184.99803 * 5 4 3 10 10 O 1.21281 * 120.00301 * 343.09204 * 9 5 4 11 11 N 1.34780 * 120.00138 * 163.09083 * 9 5 4 12 12 C 1.39121 * 120.00413 * 185.91369 * 11 9 5 13 13 C 1.38650 * 120.28282 * 333.64636 * 12 11 9 14 14 C 1.38224 * 120.03053 * 179.97438 * 13 12 11 15 15 C 1.38858 * 120.61804 * 359.97438 * 14 13 12 16 16 C 1.36468 * 120.57931 * 359.97438 * 15 14 13 17 17 C 1.40735 * 119.94162 * 359.74711 * 16 15 14 18 18 C 1.41067 * 120.30161 * 180.27042 * 17 16 15 19 19 H 1.08003 * 120.00093 * 151.03225 * 18 17 16 20 20 C 1.39949 * 120.00155 * 331.04033 * 18 17 16 21 21 N 1.30856 * 119.99995 * 344.98173 * 20 18 17 22 22 Si 1.86805 * 120.00313 * 164.98213 * 20 18 17 23 23 H 1.48502 * 109.46874 * 89.99387 * 22 20 18 24 24 H 1.48493 * 109.47403 * 209.99827 * 22 20 18 25 25 H 1.48503 * 109.46972 * 330.00226 * 22 20 18 26 26 H 1.09002 * 109.47176 * 300.00580 * 1 2 3 27 27 H 1.09004 * 109.47175 * 60.00490 * 1 2 3 28 28 H 1.09003 * 109.47498 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47176 * 239.99420 * 2 1 3 30 30 H 1.09004 * 109.47175 * 119.99509 * 2 1 3 31 31 H 1.08995 * 109.47211 * 59.99895 * 3 2 1 32 32 H 1.08999 * 109.47047 * 299.99518 * 3 2 1 33 33 H 1.08995 * 109.47210 * 59.99963 * 4 3 2 34 34 H 1.08999 * 109.46925 * 299.99661 * 4 3 2 35 35 H 1.09005 * 109.47262 * 303.75915 * 7 5 4 36 36 H 1.09007 * 109.47290 * 63.75739 * 7 5 4 37 37 H 1.09000 * 109.47096 * 301.37115 * 8 7 5 38 38 H 1.09004 * 109.47449 * 61.37242 * 8 7 5 39 39 H 1.09003 * 109.47604 * 181.37393 * 8 7 5 40 40 H 0.97004 * 119.99674 * 6.19922 * 11 9 5 41 41 H 1.07999 * 119.98312 * 359.97438 * 13 12 11 42 42 H 1.08002 * 119.68802 * 179.97438 * 14 13 12 43 43 H 1.08006 * 119.71233 * 179.97438 * 15 14 13 44 44 H 1.07998 * 120.03019 * 180.02562 * 16 15 14 45 45 H 0.96996 * 119.99683 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0801 2.8849 0.0000 6 1 3.6458 3.4235 -0.8423 7 6 3.6747 3.5697 1.3068 8 6 4.1025 5.0381 1.2671 9 6 5.5819 2.8866 -0.1231 10 8 6.2101 1.8741 0.1030 11 7 6.2272 4.0133 -0.4847 12 6 7.5984 3.9854 -0.7181 13 6 8.3944 3.0361 -0.0955 14 6 9.7561 3.0127 -0.3316 15 6 10.3409 3.9337 -1.1906 16 6 9.5810 4.8782 -1.8175 17 6 8.1913 4.9201 -1.5990 18 6 7.3978 5.8895 -2.2475 19 1 6.3640 5.6763 -2.4760 20 6 7.9502 7.1276 -2.5949 21 7 9.0888 7.5058 -2.0725 22 14 7.0622 8.2403 -3.8044 23 1 6.1399 9.1390 -3.0648 24 1 8.0557 9.0547 -4.5491 25 1 6.2848 7.4116 -4.7606 26 1 -0.3633 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8901 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.6766 1.9563 0.8899 32 1 1.6767 1.9563 -0.8900 33 1 3.9337 0.9285 -0.8891 34 1 3.9329 0.9287 0.8909 35 1 2.5931 3.5096 1.4282 36 1 4.1627 3.0716 2.1446 37 1 5.1811 5.0985 1.1213 38 1 3.5958 5.5422 0.4441 39 1 3.8356 5.5200 2.2077 40 1 5.7362 4.8447 -0.5781 41 1 7.9502 2.3146 0.5743 42 1 10.3710 2.2711 0.1567 43 1 11.4064 3.9024 -1.3642 44 1 10.0450 5.5899 -2.4842 45 1 9.4714 8.3640 -2.3131 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000549713371.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:27 Heat of formation + Delta-G solvation = -48.947388 kcal Electronic energy + Delta-G solvation = -23177.804042 eV Core-core repulsion = 19965.670137 eV Total energy + Delta-G solvation = -3212.133906 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.94284 -37.54184 -36.20948 -34.31889 -33.67027 -33.50444 -30.45972 -29.59704 -28.53560 -26.71285 -25.20158 -22.92726 -22.62618 -21.43691 -20.92427 -19.99406 -19.12804 -17.37741 -16.75514 -16.09726 -15.60717 -15.31186 -14.81818 -14.39431 -14.04175 -13.92724 -13.66618 -13.39420 -13.18020 -12.85699 -12.67384 -12.61353 -12.25172 -12.12258 -11.69353 -11.48998 -11.37034 -11.30721 -11.17448 -11.12034 -10.96189 -10.87056 -10.67206 -10.58874 -10.50721 -10.33280 -10.07534 -9.69429 -9.26377 -9.19398 -8.55648 -7.36419 -6.96373 -6.66949 -4.38800 2.64250 2.87973 3.03265 3.06968 3.20818 3.49430 3.88293 3.94871 4.62590 4.71066 4.82526 4.92573 5.02298 5.12923 5.15095 5.35281 5.46024 5.56191 5.61743 5.67685 5.68905 5.72185 5.78568 5.89863 5.95636 5.99443 6.07642 6.13832 6.21499 6.34051 6.36963 6.40691 6.46271 6.56967 6.64664 6.94975 7.08551 7.17529 7.32301 7.67599 7.73642 7.99265 8.11940 8.14699 8.47760 8.57215 8.82742 8.86868 9.08090 10.16740 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.015662 B = 0.004374 C = 0.003737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.282283 B = 6399.459702 C = 7490.733127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.121 4.121 4 C -0.099 4.099 5 C -0.107 4.107 6 H 0.090 0.910 7 C -0.112 4.112 8 C -0.172 4.172 9 C 0.502 3.498 10 O -0.541 6.541 11 N -0.636 5.636 12 C 0.017 3.983 13 C -0.102 4.102 14 C -0.223 4.223 15 C -0.117 4.117 16 C -0.147 4.147 17 C 0.101 3.899 18 C -0.473 4.473 19 H 0.074 0.926 20 C 0.079 3.921 21 N -0.795 5.795 22 Si 0.905 3.095 23 H -0.270 1.270 24 H -0.276 1.276 25 H -0.262 1.262 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.051 0.949 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.066 0.934 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.058 0.942 39 H 0.057 0.943 40 H 0.405 0.595 41 H 0.125 0.875 42 H 0.089 0.911 43 H 0.087 0.913 44 H 0.117 0.883 45 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.982 -4.645 3.261 14.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C -0.158 4.158 4 C -0.136 4.136 5 C -0.129 4.129 6 H 0.108 0.892 7 C -0.150 4.150 8 C -0.230 4.230 9 C 0.289 3.711 10 O -0.420 6.420 11 N -0.279 5.279 12 C -0.077 4.077 13 C -0.121 4.121 14 C -0.243 4.243 15 C -0.136 4.136 16 C -0.167 4.167 17 C 0.097 3.903 18 C -0.503 4.503 19 H 0.092 0.908 20 C -0.139 4.139 21 N -0.421 5.421 22 Si 0.729 3.271 23 H -0.195 1.195 24 H -0.201 1.201 25 H -0.186 1.186 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.242 0.758 41 H 0.143 0.857 42 H 0.107 0.893 43 H 0.105 0.895 44 H 0.134 0.866 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -12.413 -5.145 3.401 13.861 hybrid contribution -0.448 1.146 -0.681 1.406 sum -12.861 -3.999 2.721 13.741 Atomic orbital electron populations 1.21779 0.96154 1.01342 1.01669 1.21528 0.95479 0.97157 1.02148 1.21697 0.95462 0.96633 1.02041 1.21375 0.94335 0.94493 1.03442 1.21408 0.92801 0.98682 0.99983 0.89214 1.21520 1.01414 0.95833 0.96244 1.22089 1.03005 0.95784 1.02094 1.20550 0.89549 0.83245 0.77765 1.90560 1.67977 1.33426 1.50005 1.43225 1.08108 1.11016 1.65518 1.17869 0.81870 1.04709 1.03266 1.21059 0.92995 0.98550 0.99540 1.20364 0.94389 1.02993 1.06593 1.20471 0.97674 0.96575 0.98849 1.20814 0.93777 0.99324 1.02818 1.17380 0.92708 0.91325 0.88888 1.19259 0.98326 0.97861 1.34846 0.90772 1.25827 0.94731 0.98449 0.94861 1.69819 1.17039 1.20336 1.34903 0.86370 0.79942 0.79814 0.80955 1.19524 1.20098 1.18561 0.92876 0.92839 0.93010 0.92028 0.92027 0.91760 0.92062 0.91486 0.91067 0.90875 0.91534 0.91271 0.92257 0.92355 0.75782 0.85731 0.89280 0.89481 0.86559 0.90879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.91 37.15 0.37 -0.83 16 2 C -0.13 -1.16 5.93 -26.73 -0.16 -1.32 16 3 C -0.12 -1.20 4.97 -26.73 -0.13 -1.33 16 4 C -0.10 -1.26 4.03 -26.73 -0.11 -1.37 16 5 C -0.11 -1.49 2.24 -91.77 -0.21 -1.69 16 6 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 7 C -0.11 -1.34 5.25 -26.73 -0.14 -1.48 16 8 C -0.17 -2.14 9.05 37.16 0.34 -1.80 16 9 C 0.50 9.53 6.57 -10.99 -0.07 9.45 16 10 O -0.54 -11.97 13.02 5.56 0.07 -11.90 16 11 N -0.64 -13.09 4.05 -9.48 -0.04 -13.12 16 12 C 0.02 0.41 6.48 -83.17 -0.54 -0.13 16 13 C -0.10 -2.50 8.80 -39.43 -0.35 -2.85 16 14 C -0.22 -5.33 10.04 -39.36 -0.39 -5.73 16 15 C -0.12 -2.82 9.96 -39.99 -0.40 -3.22 16 16 C -0.15 -3.83 8.60 -39.28 -0.34 -4.17 16 17 C 0.10 2.62 5.54 -106.65 -0.59 2.03 16 18 C -0.47 -11.84 8.30 -37.87 -0.31 -12.15 16 19 H 0.07 1.75 7.31 -52.48 -0.38 1.37 16 20 C 0.08 1.90 5.16 -17.33 -0.09 1.81 16 21 N -0.80 -19.97 11.10 55.55 0.62 -19.35 16 22 Si 0.90 17.93 29.59 -169.99 -5.03 12.90 16 23 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 24 H -0.28 -5.42 7.11 56.52 0.40 -5.02 16 25 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.59 6.49 -51.93 -0.34 0.25 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.07 0.97 8.08 -51.93 -0.42 0.55 16 35 H 0.07 0.71 6.40 -51.93 -0.33 0.38 16 36 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.07 1.04 5.50 -51.93 -0.29 0.75 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.40 7.63 5.76 -40.82 -0.24 7.39 16 41 H 0.13 3.06 5.52 -52.49 -0.29 2.77 16 42 H 0.09 1.91 8.06 -52.49 -0.42 1.49 16 43 H 0.09 1.87 8.06 -52.48 -0.42 1.45 16 44 H 0.12 3.08 6.39 -52.49 -0.34 2.74 16 45 H 0.28 6.44 8.30 -40.82 -0.34 6.10 16 LS Contribution 355.33 15.07 5.35 5.35 Total: -1.00 -28.36 355.33 -9.40 -37.76 By element: Atomic # 1 Polarization: 20.37 SS G_CDS: -7.25 Total: 13.12 kcal Atomic # 6 Polarization: -21.64 SS G_CDS: -3.12 Total: -24.76 kcal Atomic # 7 Polarization: -33.05 SS G_CDS: 0.58 Total: -32.48 kcal Atomic # 8 Polarization: -11.97 SS G_CDS: 0.07 Total: -11.90 kcal Atomic # 14 Polarization: 17.93 SS G_CDS: -5.03 Total: 12.90 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -28.36 -9.40 -37.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000549713371.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.190 kcal (2) G-P(sol) polarization free energy of solvation -28.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds