Wall clock time and date at job start Tue Mar 31 2020 06:56:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47181 * 2 1 4 4 C 1.53007 * 109.46917 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.46980 * 179.97438 * 4 3 2 6 6 H 1.09000 * 109.47229 * 305.00088 * 5 4 3 7 7 C 1.53000 * 109.46962 * 64.99835 * 5 4 3 8 8 C 1.52997 * 109.47237 * 183.75806 * 7 5 4 9 9 C 1.50691 * 109.47150 * 184.99803 * 5 4 3 10 10 O 1.21281 * 120.00301 * 343.09204 * 9 5 4 11 11 N 1.34780 * 120.00138 * 163.09083 * 9 5 4 12 12 C 1.39121 * 120.00413 * 185.91369 * 11 9 5 13 13 C 1.38650 * 120.28282 * 333.64636 * 12 11 9 14 14 C 1.38224 * 120.03053 * 179.97438 * 13 12 11 15 15 C 1.38858 * 120.61804 * 359.97438 * 14 13 12 16 16 C 1.36468 * 120.57931 * 359.97438 * 15 14 13 17 17 C 1.40735 * 119.94162 * 359.74711 * 16 15 14 18 18 C 1.41067 * 120.30161 * 180.27042 * 17 16 15 19 19 H 1.08003 * 120.00093 * 151.03225 * 18 17 16 20 20 C 1.39949 * 120.00155 * 331.04033 * 18 17 16 21 21 N 1.30856 * 119.99995 * 344.98173 * 20 18 17 22 22 Si 1.86805 * 120.00313 * 164.98213 * 20 18 17 23 23 H 1.48502 * 109.46874 * 89.99387 * 22 20 18 24 24 H 1.48493 * 109.47403 * 209.99827 * 22 20 18 25 25 H 1.48503 * 109.46972 * 330.00226 * 22 20 18 26 26 H 1.09002 * 109.47176 * 300.00580 * 1 2 3 27 27 H 1.09004 * 109.47175 * 60.00490 * 1 2 3 28 28 H 1.09003 * 109.47498 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47176 * 239.99420 * 2 1 3 30 30 H 1.09004 * 109.47175 * 119.99509 * 2 1 3 31 31 H 1.08995 * 109.47211 * 59.99895 * 3 2 1 32 32 H 1.08999 * 109.47047 * 299.99518 * 3 2 1 33 33 H 1.08995 * 109.47210 * 59.99963 * 4 3 2 34 34 H 1.08999 * 109.46925 * 299.99661 * 4 3 2 35 35 H 1.09005 * 109.47262 * 303.75915 * 7 5 4 36 36 H 1.09007 * 109.47290 * 63.75739 * 7 5 4 37 37 H 1.09000 * 109.47096 * 301.37115 * 8 7 5 38 38 H 1.09004 * 109.47449 * 61.37242 * 8 7 5 39 39 H 1.09003 * 109.47604 * 181.37393 * 8 7 5 40 40 H 0.97004 * 119.99674 * 6.19922 * 11 9 5 41 41 H 1.07999 * 119.98312 * 359.97438 * 13 12 11 42 42 H 1.08002 * 119.68802 * 179.97438 * 14 13 12 43 43 H 1.08006 * 119.71233 * 179.97438 * 15 14 13 44 44 H 1.07998 * 120.03019 * 180.02562 * 16 15 14 45 45 H 0.96996 * 119.99683 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0801 2.8849 0.0000 6 1 3.6458 3.4235 -0.8423 7 6 3.6747 3.5697 1.3068 8 6 4.1025 5.0381 1.2671 9 6 5.5819 2.8866 -0.1231 10 8 6.2101 1.8741 0.1030 11 7 6.2272 4.0133 -0.4847 12 6 7.5984 3.9854 -0.7181 13 6 8.3944 3.0361 -0.0955 14 6 9.7561 3.0127 -0.3316 15 6 10.3409 3.9337 -1.1906 16 6 9.5810 4.8782 -1.8175 17 6 8.1913 4.9201 -1.5990 18 6 7.3978 5.8895 -2.2475 19 1 6.3640 5.6763 -2.4760 20 6 7.9502 7.1276 -2.5949 21 7 9.0888 7.5058 -2.0725 22 14 7.0622 8.2403 -3.8044 23 1 6.1399 9.1390 -3.0648 24 1 8.0557 9.0547 -4.5491 25 1 6.2848 7.4116 -4.7606 26 1 -0.3633 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8901 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.6766 1.9563 0.8899 32 1 1.6767 1.9563 -0.8900 33 1 3.9337 0.9285 -0.8891 34 1 3.9329 0.9287 0.8909 35 1 2.5931 3.5096 1.4282 36 1 4.1627 3.0716 2.1446 37 1 5.1811 5.0985 1.1213 38 1 3.5958 5.5422 0.4441 39 1 3.8356 5.5200 2.2077 40 1 5.7362 4.8447 -0.5781 41 1 7.9502 2.3146 0.5743 42 1 10.3710 2.2711 0.1567 43 1 11.4064 3.9024 -1.3642 44 1 10.0450 5.5899 -2.4842 45 1 9.4714 8.3640 -2.3131 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000549713371.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:26 Heat of formation + Delta-G solvation = -61.748711 kcal Electronic energy + Delta-G solvation = -23178.359149 eV Core-core repulsion = 19965.670137 eV Total energy + Delta-G solvation = -3212.689013 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.50389 -39.23152 -37.38411 -35.68962 -35.50514 -34.79671 -31.55309 -31.33344 -30.30590 -27.80464 -27.01232 -24.09078 -23.79979 -23.07177 -22.12827 -21.41383 -20.62202 -19.21075 -18.30381 -17.76703 -17.03649 -16.50091 -16.21528 -15.96057 -15.55468 -14.98488 -14.85243 -14.53919 -14.44979 -14.42090 -14.23903 -13.95515 -13.55999 -13.41310 -13.18057 -12.98009 -12.84427 -12.70506 -12.42733 -12.17838 -12.15691 -12.05335 -11.91700 -11.75820 -11.63946 -11.52946 -11.46177 -11.22423 -11.06508 -10.95734 -10.22763 -9.31818 -8.81441 -8.50514 -6.30597 0.85035 1.05998 1.41753 1.51032 1.56277 1.86988 2.21989 2.46780 2.77670 3.68397 3.73123 3.79880 3.90506 4.17836 4.21402 4.31277 4.40531 4.50128 4.53140 4.64246 4.65158 4.70774 4.78116 4.82711 4.90445 4.92971 5.06922 5.08944 5.12361 5.15734 5.22424 5.23864 5.25910 5.29332 5.40427 5.41597 5.46529 5.50095 5.56658 5.80209 5.83824 6.13641 6.18179 6.26434 6.65562 6.76163 6.95669 7.03188 7.43742 8.36967 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.015662 B = 0.004374 C = 0.003737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.282283 B = 6399.459702 C = 7490.733127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.128 4.128 3 C -0.112 4.112 4 C -0.094 4.094 5 C -0.098 4.098 6 H 0.109 0.891 7 C -0.105 4.105 8 C -0.173 4.173 9 C 0.497 3.503 10 O -0.576 6.576 11 N -0.635 5.635 12 C 0.011 3.989 13 C -0.118 4.118 14 C -0.229 4.229 15 C -0.122 4.122 16 C -0.171 4.171 17 C 0.073 3.927 18 C -0.493 4.493 19 H 0.082 0.918 20 C 0.039 3.961 21 N -0.827 5.827 22 Si 0.980 3.020 23 H -0.258 1.258 24 H -0.273 1.273 25 H -0.260 1.260 26 H 0.060 0.940 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.053 0.947 30 H 0.058 0.942 31 H 0.079 0.921 32 H 0.070 0.930 33 H 0.047 0.953 34 H 0.058 0.942 35 H 0.108 0.892 36 H 0.055 0.945 37 H 0.036 0.964 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.412 0.588 41 H 0.123 0.877 42 H 0.112 0.888 43 H 0.111 0.889 44 H 0.104 0.896 45 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.518 -3.925 3.114 16.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.165 4.165 3 C -0.150 4.150 4 C -0.132 4.132 5 C -0.119 4.119 6 H 0.127 0.873 7 C -0.143 4.143 8 C -0.230 4.230 9 C 0.287 3.713 10 O -0.456 6.456 11 N -0.279 5.279 12 C -0.084 4.084 13 C -0.139 4.139 14 C -0.249 4.249 15 C -0.140 4.140 16 C -0.192 4.192 17 C 0.069 3.931 18 C -0.523 4.523 19 H 0.100 0.900 20 C -0.176 4.176 21 N -0.453 5.453 22 Si 0.800 3.200 23 H -0.182 1.182 24 H -0.197 1.197 25 H -0.183 1.183 26 H 0.079 0.921 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.098 0.902 32 H 0.088 0.912 33 H 0.066 0.934 34 H 0.077 0.923 35 H 0.126 0.874 36 H 0.074 0.926 37 H 0.055 0.945 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.251 0.749 41 H 0.140 0.860 42 H 0.130 0.870 43 H 0.129 0.871 44 H 0.122 0.878 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -14.969 -4.429 3.270 15.949 hybrid contribution 0.383 0.864 -0.581 1.109 sum -14.586 -3.565 2.688 15.254 Atomic orbital electron populations 1.21755 0.94821 1.01909 1.02197 1.21535 0.96620 0.96640 1.01722 1.21651 0.92749 0.97389 1.03188 1.21345 0.96622 0.93300 1.01943 1.21478 0.88441 1.00021 1.01962 0.87338 1.21526 1.03325 0.95032 0.94387 1.22090 1.00961 0.96406 1.03552 1.21563 0.91730 0.82017 0.75986 1.90531 1.69345 1.34513 1.51245 1.43294 1.06791 1.12086 1.65686 1.18055 0.83813 1.04030 1.02512 1.21228 0.93648 0.98911 1.00065 1.20662 0.94488 1.03311 1.06412 1.20707 0.98854 0.96031 0.98451 1.20862 0.94381 1.00117 1.03792 1.17731 0.93200 0.92358 0.89798 1.19508 0.98783 0.98406 1.35583 0.90006 1.26690 0.95360 0.99549 0.95983 1.69885 1.18438 1.21150 1.35829 0.85236 0.78730 0.77674 0.78314 1.18226 1.19736 1.18338 0.92139 0.92484 0.92527 0.92775 0.92305 0.90200 0.91170 0.93392 0.92323 0.87425 0.92600 0.94474 0.90829 0.90841 0.74895 0.85986 0.86974 0.87120 0.87808 0.90204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.91 71.98 0.71 -1.27 16 2 C -0.13 -2.12 5.93 30.59 0.18 -1.94 16 3 C -0.11 -1.94 4.97 30.60 0.15 -1.78 16 4 C -0.09 -2.30 4.03 30.60 0.12 -2.18 16 5 C -0.10 -2.57 2.24 -11.54 -0.03 -2.60 16 6 H 0.11 2.49 8.14 -2.39 -0.02 2.47 16 7 C -0.11 -2.27 5.25 30.59 0.16 -2.11 16 8 C -0.17 -3.95 9.05 71.98 0.65 -3.30 16 9 C 0.50 19.02 6.57 87.65 0.58 19.59 16 10 O -0.58 -26.10 13.02 -3.03 -0.04 -26.13 16 11 N -0.64 -26.50 4.05 -302.28 -1.22 -27.72 16 12 C 0.01 0.55 6.48 38.88 0.25 0.80 16 13 C -0.12 -5.97 8.80 22.36 0.20 -5.78 16 14 C -0.23 -11.04 10.04 22.41 0.22 -10.81 16 15 C -0.12 -5.95 9.96 22.00 0.22 -5.73 16 16 C -0.17 -9.16 8.60 22.47 0.19 -8.97 16 17 C 0.07 3.89 5.54 -21.18 -0.12 3.78 16 18 C -0.49 -24.96 8.30 23.38 0.19 -24.76 16 19 H 0.08 3.87 7.31 -2.91 -0.02 3.85 16 20 C 0.04 1.88 5.16 85.25 0.44 2.32 16 21 N -0.83 -41.98 11.10 21.83 0.24 -41.74 16 22 Si 0.98 36.14 29.59 68.60 2.03 38.17 16 23 H -0.26 -8.97 7.11 99.48 0.71 -8.26 16 24 H -0.27 -9.83 7.11 99.48 0.71 -9.13 16 25 H -0.26 -9.42 7.11 99.48 0.71 -8.71 16 26 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.08 1.15 6.49 -2.39 -0.02 1.13 16 32 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.05 1.34 8.14 -2.39 -0.02 1.33 16 34 H 0.06 1.58 8.08 -2.39 -0.02 1.56 16 35 H 0.11 1.65 6.40 -2.38 -0.02 1.63 16 36 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 37 H 0.04 1.09 5.50 -2.39 -0.01 1.08 16 38 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 39 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.41 15.60 5.76 -92.71 -0.53 15.07 16 41 H 0.12 6.17 5.52 -2.91 -0.02 6.16 16 42 H 0.11 4.76 8.06 -2.91 -0.02 4.74 16 43 H 0.11 4.74 8.06 -2.91 -0.02 4.72 16 44 H 0.10 5.70 6.39 -2.91 -0.02 5.68 16 45 H 0.29 13.25 8.30 -92.71 -0.77 12.48 16 Total: -1.00 -62.68 355.33 5.58 -57.09 By element: Atomic # 1 Polarization: 44.64 SS G_CDS: 0.44 Total: 45.07 kcal Atomic # 6 Polarization: -48.87 SS G_CDS: 4.14 Total: -44.74 kcal Atomic # 7 Polarization: -68.48 SS G_CDS: -0.98 Total: -69.46 kcal Atomic # 8 Polarization: -26.10 SS G_CDS: -0.04 Total: -26.13 kcal Atomic # 14 Polarization: 36.14 SS G_CDS: 2.03 Total: 38.17 kcal Total: -62.68 5.58 -57.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000549713371.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.655 kcal (2) G-P(sol) polarization free energy of solvation -62.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds