Wall clock time and date at job start Tue Mar 31 2020 06:56:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46916 * 2 1 4 4 C 1.52999 * 109.46621 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.46938 * 185.18770 * 4 3 2 6 6 H 1.08997 * 109.47343 * 54.51444 * 5 4 3 7 7 C 1.52995 * 109.47556 * 294.50866 * 5 4 3 8 8 C 1.52996 * 109.47188 * 304.35896 * 7 5 4 9 9 C 1.50710 * 109.47102 * 174.50672 * 5 4 3 10 10 O 1.21274 * 119.99911 * 0.02562 * 9 5 4 11 11 N 1.34773 * 119.99922 * 179.97438 * 9 5 4 12 12 C 1.39123 * 120.00015 * 175.32354 * 11 9 5 13 13 C 1.38645 * 120.28171 * 26.73849 * 12 11 9 14 14 C 1.38230 * 120.03113 * 180.25182 * 13 12 11 15 15 C 1.38863 * 120.61322 * 359.44636 * 14 13 12 16 16 C 1.36461 * 120.58016 * 0.56118 * 15 14 13 17 17 C 1.40732 * 119.94244 * 359.71731 * 16 15 14 18 18 C 1.41071 * 120.30251 * 180.02562 * 17 16 15 19 19 H 1.07994 * 120.00461 * 213.17602 * 18 17 16 20 20 C 1.39956 * 119.99773 * 33.17185 * 18 17 16 21 21 N 1.30855 * 120.00081 * 6.43741 * 20 18 17 22 22 Si 1.86801 * 120.00015 * 186.43386 * 20 18 17 23 23 H 1.48492 * 109.47157 * 90.00263 * 22 20 18 24 24 H 1.48506 * 109.47147 * 210.00201 * 22 20 18 25 25 H 1.48499 * 109.47059 * 330.00176 * 22 20 18 26 26 H 1.08999 * 109.47194 * 300.00249 * 1 2 3 27 27 H 1.09005 * 109.46979 * 59.99749 * 1 2 3 28 28 H 1.08999 * 109.47126 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.46851 * 240.00058 * 2 1 3 30 30 H 1.09000 * 109.46648 * 119.99964 * 2 1 3 31 31 H 1.08993 * 109.47313 * 60.00341 * 3 2 1 32 32 H 1.09000 * 109.47433 * 299.99484 * 3 2 1 33 33 H 1.09005 * 109.47310 * 65.19388 * 4 3 2 34 34 H 1.09003 * 109.47663 * 305.18690 * 4 3 2 35 35 H 1.09003 * 109.46709 * 64.35591 * 7 5 4 36 36 H 1.09000 * 109.47507 * 184.35899 * 7 5 4 37 37 H 1.08997 * 109.47161 * 185.40918 * 8 7 5 38 38 H 1.08998 * 109.47074 * 305.40901 * 8 7 5 39 39 H 1.09007 * 109.47373 * 65.41317 * 8 7 5 40 40 H 0.97004 * 120.00038 * 355.33393 * 11 9 5 41 41 H 1.07998 * 119.98562 * 359.97438 * 13 12 11 42 42 H 1.08002 * 119.68573 * 179.70391 * 14 13 12 43 43 H 1.08003 * 119.70852 * 180.28200 * 15 14 13 44 44 H 1.07995 * 120.03116 * 179.74664 * 16 15 14 45 45 H 0.97002 * 120.00165 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.0801 2.8790 0.1298 6 1 3.6392 3.3424 1.0123 7 6 3.6855 3.6754 -1.1155 8 6 4.2131 2.9651 -2.3636 9 6 5.5811 2.8688 0.2648 10 8 6.1835 1.8163 0.2570 11 7 6.2540 4.0294 0.3932 12 6 7.6273 4.0164 0.6154 13 6 8.3964 2.9497 0.1762 14 6 9.7598 2.9396 0.4043 15 6 10.3745 3.9968 1.0621 16 6 9.6416 5.0593 1.5051 17 6 8.2511 5.0916 1.2908 18 6 7.4861 6.1864 1.7451 19 1 6.4711 6.0337 2.0808 20 6 8.0427 7.4704 1.7608 21 7 9.2244 7.6777 1.2384 22 14 7.0986 8.8883 2.5273 23 1 7.4433 8.9911 3.9680 24 1 7.4616 10.1537 1.8400 25 1 5.6404 8.6474 2.3832 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9563 0.8899 32 1 1.6767 1.9563 -0.8900 33 1 3.9330 1.0114 -0.9337 34 1 3.9338 0.8501 0.8390 35 1 2.5993 3.7485 -1.1709 36 1 4.1145 4.6758 -1.0581 37 1 4.0162 3.5797 -3.2420 38 1 5.2869 2.8062 -2.2646 39 1 3.7120 2.0033 -2.4735 40 1 5.7807 4.8739 0.3309 41 1 7.9295 2.1241 -0.3403 42 1 10.3528 2.1036 0.0640 43 1 11.4414 3.9759 1.2285 44 1 10.1282 5.8748 2.0192 45 1 9.6101 8.5677 1.2490 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000549713372.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:30 Heat of formation + Delta-G solvation = -51.444856 kcal Electronic energy + Delta-G solvation = -23177.593382 eV Core-core repulsion = 19965.351178 eV Total energy + Delta-G solvation = -3212.242204 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.94816 -37.62756 -36.29230 -34.15912 -33.64884 -33.55947 -29.99039 -29.57389 -28.68712 -26.79044 -25.15171 -23.55451 -22.52322 -21.41410 -20.83944 -19.97138 -18.65463 -17.35851 -16.62537 -16.12497 -15.87858 -15.30828 -14.94375 -14.54486 -14.07516 -13.97343 -13.54208 -13.24534 -13.12393 -12.83211 -12.65230 -12.53448 -12.30342 -12.18714 -11.72520 -11.47060 -11.39590 -11.31438 -11.20254 -11.05233 -10.91809 -10.84711 -10.74770 -10.48755 -10.45352 -10.33873 -10.09681 -9.70224 -9.26937 -9.21255 -8.58621 -7.31492 -6.92055 -6.62725 -4.40694 2.64033 2.89410 3.04765 3.06101 3.20672 3.50676 3.90343 3.94837 4.66458 4.70489 4.84182 4.94625 5.03198 5.06961 5.14140 5.37206 5.43444 5.53613 5.63135 5.68433 5.68954 5.74443 5.78587 5.89431 5.94137 6.00198 6.06988 6.15320 6.19593 6.31500 6.36328 6.37512 6.54447 6.57027 6.63595 6.96014 7.09830 7.18660 7.31879 7.70001 7.73500 8.00472 8.11139 8.15139 8.48241 8.58903 8.84476 8.87889 9.07930 10.23153 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.016497 B = 0.004268 C = 0.003650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.882088 B = 6558.726406 C = 7669.150879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.120 4.120 4 C -0.101 4.101 5 C -0.108 4.108 6 H 0.093 0.907 7 C -0.116 4.116 8 C -0.156 4.156 9 C 0.503 3.497 10 O -0.541 6.541 11 N -0.636 5.636 12 C 0.025 3.975 13 C -0.105 4.105 14 C -0.217 4.217 15 C -0.121 4.121 16 C -0.140 4.140 17 C 0.097 3.903 18 C -0.474 4.474 19 H 0.074 0.926 20 C 0.076 3.924 21 N -0.805 5.805 22 Si 0.910 3.090 23 H -0.269 1.269 24 H -0.278 1.278 25 H -0.264 1.264 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.051 0.949 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.067 0.933 37 H 0.053 0.947 38 H 0.058 0.942 39 H 0.058 0.942 40 H 0.403 0.597 41 H 0.124 0.876 42 H 0.089 0.911 43 H 0.087 0.913 44 H 0.120 0.880 45 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.107 -5.508 -3.177 14.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C -0.157 4.157 4 C -0.139 4.139 5 C -0.129 4.129 6 H 0.111 0.889 7 C -0.154 4.154 8 C -0.213 4.213 9 C 0.290 3.710 10 O -0.420 6.420 11 N -0.277 5.277 12 C -0.069 4.069 13 C -0.125 4.125 14 C -0.237 4.237 15 C -0.140 4.140 16 C -0.160 4.160 17 C 0.094 3.906 18 C -0.505 4.505 19 H 0.092 0.908 20 C -0.141 4.141 21 N -0.432 5.432 22 Si 0.735 3.265 23 H -0.195 1.195 24 H -0.203 1.203 25 H -0.188 1.188 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.086 0.914 37 H 0.072 0.928 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.239 0.761 41 H 0.141 0.859 42 H 0.108 0.892 43 H 0.106 0.894 44 H 0.138 0.862 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -12.558 -6.046 -3.221 14.305 hybrid contribution -0.465 1.303 0.367 1.431 sum -13.023 -4.744 -2.854 14.151 Atomic orbital electron populations 1.21781 0.96179 1.01325 1.01660 1.21528 0.95454 0.97192 1.02114 1.21668 0.95546 0.96566 1.01960 1.21442 0.94247 0.94622 1.03578 1.21402 0.92854 0.98626 1.00030 0.88918 1.21529 1.01289 0.98881 0.93679 1.21854 1.01905 1.00431 0.97100 1.20523 0.89391 0.83917 0.77169 1.90572 1.69491 1.31386 1.50509 1.42963 1.07710 1.08454 1.68599 1.17901 0.81791 1.00633 1.06556 1.21006 0.93179 0.98068 1.00200 1.20395 0.94294 0.99685 1.09359 1.20499 0.97726 0.95161 1.00582 1.20914 0.94060 0.97730 1.03273 1.17399 0.92658 0.91107 0.89452 1.19266 1.00125 0.91403 1.39682 0.90810 1.25821 0.94851 1.00220 0.93171 1.69788 1.15315 1.23763 1.34292 0.86288 0.80532 0.79868 0.79821 1.19464 1.20346 1.18789 0.92854 0.92883 0.93024 0.92084 0.92023 0.92114 0.91876 0.90929 0.91249 0.91027 0.91423 0.92790 0.92304 0.92293 0.76086 0.85875 0.89236 0.89429 0.86198 0.91015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.91 37.16 0.37 -0.83 16 2 C -0.13 -1.15 5.93 -26.73 -0.16 -1.31 16 3 C -0.12 -1.18 4.85 -26.73 -0.13 -1.31 16 4 C -0.10 -1.27 3.74 -26.73 -0.10 -1.37 16 5 C -0.11 -1.47 2.51 -91.77 -0.23 -1.70 16 6 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 7 C -0.12 -1.37 5.31 -26.74 -0.14 -1.51 16 8 C -0.16 -1.91 9.16 37.16 0.34 -1.57 16 9 C 0.50 9.42 5.90 -10.98 -0.06 9.36 16 10 O -0.54 -11.82 12.87 5.56 0.07 -11.75 16 11 N -0.64 -13.02 4.99 -9.47 -0.05 -13.07 16 12 C 0.03 0.62 6.47 -83.17 -0.54 0.08 16 13 C -0.10 -2.56 8.78 -39.43 -0.35 -2.90 16 14 C -0.22 -5.16 10.04 -39.35 -0.39 -5.55 16 15 C -0.12 -2.91 9.96 -39.99 -0.40 -3.31 16 16 C -0.14 -3.63 8.58 -39.28 -0.34 -3.97 16 17 C 0.10 2.54 5.53 -106.65 -0.59 1.95 16 18 C -0.47 -11.89 8.22 -37.87 -0.31 -12.20 16 19 H 0.07 1.75 7.43 -52.49 -0.39 1.36 16 20 C 0.08 1.83 5.30 -17.32 -0.09 1.74 16 21 N -0.81 -20.37 10.93 55.55 0.61 -19.76 16 22 Si 0.91 18.10 29.57 -169.99 -5.03 13.07 16 23 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 24 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 25 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.58 6.94 -51.93 -0.36 0.22 16 33 H 0.07 0.96 6.17 -51.93 -0.32 0.64 16 34 H 0.07 0.98 7.94 -51.93 -0.41 0.57 16 35 H 0.07 0.69 6.92 -51.93 -0.36 0.33 16 36 H 0.07 0.82 7.35 -51.93 -0.38 0.44 16 37 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.88 7.19 -51.93 -0.37 0.51 16 39 H 0.06 0.66 6.56 -51.93 -0.34 0.32 16 40 H 0.40 7.56 6.98 -40.82 -0.29 7.27 16 41 H 0.12 2.99 5.58 -52.49 -0.29 2.70 16 42 H 0.09 1.90 8.06 -52.49 -0.42 1.48 16 43 H 0.09 1.88 8.06 -52.48 -0.42 1.45 16 44 H 0.12 3.19 6.41 -52.49 -0.34 2.86 16 45 H 0.28 6.48 8.30 -40.82 -0.34 6.14 16 LS Contribution 354.86 15.07 5.35 5.35 Total: -1.00 -28.36 354.86 -9.38 -37.75 By element: Atomic # 1 Polarization: 20.05 SS G_CDS: -7.21 Total: 12.83 kcal Atomic # 6 Polarization: -21.30 SS G_CDS: -3.12 Total: -24.42 kcal Atomic # 7 Polarization: -33.39 SS G_CDS: 0.56 Total: -32.83 kcal Atomic # 8 Polarization: -11.82 SS G_CDS: 0.07 Total: -11.75 kcal Atomic # 14 Polarization: 18.10 SS G_CDS: -5.03 Total: 13.07 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -28.36 -9.38 -37.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000549713372.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.697 kcal (2) G-P(sol) polarization free energy of solvation -28.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds