Wall clock time and date at job start Tue Mar 31 2020 06:47:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53001 * 109.47262 * 2 1 4 4 C 1.53003 * 109.47257 * 179.97438 * 3 2 1 5 5 C 1.53007 * 109.46909 * 60.00118 * 4 3 2 6 6 C 1.52998 * 109.47486 * 300.00568 * 4 3 2 7 7 C 1.52992 * 109.47365 * 180.02562 * 4 3 2 8 8 C 1.50696 * 109.47335 * 180.02562 * 7 4 3 9 9 O 1.21283 * 119.99954 * 359.97438 * 8 7 4 10 10 N 1.34779 * 119.99901 * 180.02562 * 8 7 4 11 11 C 1.39131 * 119.99596 * 185.72517 * 10 8 7 12 12 C 1.38643 * 120.29102 * 19.23887 * 11 10 8 13 13 C 1.38218 * 120.03790 * 180.25521 * 12 11 10 14 14 C 1.38869 * 120.61130 * 359.74772 * 13 12 11 15 15 C 1.36455 * 120.58254 * 359.97438 * 14 13 12 16 16 C 1.40745 * 119.94062 * 359.97438 * 15 14 13 17 17 C 1.41070 * 120.29920 * 179.97438 * 16 15 14 18 18 H 1.07998 * 119.99979 * 206.47457 * 17 16 15 19 19 C 1.39960 * 119.99938 * 26.47839 * 17 16 15 20 20 N 1.30849 * 119.99785 * 201.35869 * 19 17 16 21 21 Si 1.86801 * 120.00227 * 21.35526 * 19 17 16 22 22 H 1.48507 * 109.47026 * 270.00322 * 21 19 17 23 23 H 1.48502 * 109.47080 * 29.99739 * 21 19 17 24 24 H 1.48493 * 109.47157 * 150.00329 * 21 19 17 25 25 H 1.08999 * 109.47327 * 60.00022 * 1 2 3 26 26 H 1.09002 * 109.47621 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47274 * 299.99993 * 1 2 3 28 28 H 1.08996 * 109.47274 * 240.00007 * 2 1 3 29 29 H 1.09004 * 109.47209 * 120.00445 * 2 1 3 30 30 H 1.09004 * 109.46881 * 60.00166 * 3 2 1 31 31 H 1.08997 * 109.47125 * 299.99717 * 3 2 1 32 32 H 1.08993 * 109.47027 * 179.97438 * 5 4 3 33 33 H 1.09002 * 109.47121 * 300.00474 * 5 4 3 34 34 H 1.08999 * 109.46975 * 59.99641 * 5 4 3 35 35 H 1.09004 * 109.46998 * 299.99720 * 6 4 3 36 36 H 1.09001 * 109.47407 * 59.99090 * 6 4 3 37 37 H 1.08993 * 109.47454 * 179.97438 * 6 4 3 38 38 H 1.09000 * 109.47390 * 59.99950 * 7 4 3 39 39 H 1.09004 * 109.47301 * 300.00693 * 7 4 3 40 40 H 0.96996 * 120.00122 * 5.72752 * 10 8 7 41 41 H 1.08006 * 119.97708 * 359.97438 * 12 11 10 42 42 H 1.07996 * 119.69243 * 179.76358 * 13 12 11 43 43 H 1.08004 * 119.70407 * 180.02562 * 14 13 12 44 44 H 1.07998 * 120.02997 * 180.02562 * 15 14 13 45 45 H 0.97002 * 120.00063 * 354.93583 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0805 0.7210 -1.2484 6 6 4.0795 0.7213 1.2501 7 6 4.0800 2.8849 0.0013 8 6 5.5870 2.8849 0.0013 9 8 6.1934 1.8345 0.0013 10 7 6.2609 4.0521 0.0023 11 6 7.6470 4.0551 -0.1179 12 6 8.3071 2.9479 -0.6281 13 6 9.6847 2.9545 -0.7403 14 6 10.4205 4.0658 -0.3506 15 6 9.7963 5.1713 0.1497 16 6 8.3944 5.1908 0.2733 17 6 7.7412 6.3294 0.7900 18 1 6.7837 6.2272 1.2790 19 6 8.3341 7.5914 0.6690 20 7 7.9795 8.5607 1.4733 21 14 9.6316 7.8921 -0.6408 22 1 10.9751 7.5887 -0.0856 23 1 9.3688 7.0135 -1.8088 24 1 9.5824 9.3131 -1.0692 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 5.1704 0.7214 -1.2482 33 1 3.7171 -0.3066 -1.2484 34 1 3.7174 1.2347 -2.1385 35 1 3.7159 1.2353 2.1399 36 1 3.7161 -0.3063 1.2501 37 1 5.1695 0.7209 1.2503 38 1 3.7164 3.3985 0.8913 39 1 3.7170 3.3991 -0.8887 40 1 5.7795 4.8900 0.0869 41 1 7.7448 2.0779 -0.9339 42 1 10.1934 2.0875 -1.1350 43 1 11.4964 4.0553 -0.4450 44 1 10.3773 6.0308 0.4497 45 1 7.2550 8.4268 2.1042 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000554750383.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:59 Heat of formation + Delta-G solvation = -54.746214 kcal Electronic energy + Delta-G solvation = -23315.945241 eV Core-core repulsion = 20103.559880 eV Total energy + Delta-G solvation = -3212.385362 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.61748 -39.67375 -38.15284 -35.67402 -35.49229 -33.79321 -32.08669 -30.93142 -28.71743 -28.12932 -27.38324 -26.54966 -24.03763 -23.04569 -22.03463 -21.02462 -20.11067 -19.61105 -18.28384 -17.92193 -16.68848 -16.44452 -16.08630 -16.05366 -15.76397 -15.27742 -15.19735 -14.76533 -14.59639 -14.36371 -14.16947 -13.87908 -13.72562 -13.59389 -12.94299 -12.75478 -12.67344 -12.64123 -12.44304 -12.39602 -12.33035 -12.13416 -11.69387 -11.67083 -11.59284 -11.33698 -11.29185 -11.20892 -11.08788 -10.85918 -10.10721 -9.61984 -9.28278 -8.75300 -6.47359 0.70886 0.86359 1.40154 1.54688 1.75903 1.86584 2.18990 2.40985 2.65848 3.54015 3.69985 3.77240 3.92291 4.18117 4.25989 4.37338 4.39570 4.45929 4.50636 4.63621 4.67074 4.70146 4.77459 4.87617 4.91365 4.95448 4.97513 5.00733 5.03086 5.17282 5.19220 5.23389 5.31343 5.33771 5.34837 5.45477 5.52415 5.60477 5.63535 5.66812 5.70145 5.98337 6.05299 6.07397 6.40346 6.63807 6.70561 6.92165 7.39109 8.01011 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.024166 B = 0.003891 C = 0.003505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.362742 B = 7195.011356 C = 7987.626268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.127 4.127 3 C -0.103 4.103 4 C -0.040 4.040 5 C -0.150 4.150 6 C -0.151 4.151 7 C -0.126 4.126 8 C 0.496 3.504 9 O -0.547 6.547 10 N -0.647 5.647 11 C 0.025 3.975 12 C -0.111 4.111 13 C -0.222 4.222 14 C -0.096 4.096 15 C -0.248 4.248 16 C 0.059 3.941 17 C -0.542 4.542 18 H 0.060 0.940 19 C 0.018 3.982 20 N -0.838 5.838 21 Si 1.102 2.898 22 H -0.262 1.262 23 H -0.266 1.266 24 H -0.282 1.282 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.054 0.946 28 H 0.063 0.937 29 H 0.060 0.940 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.055 0.945 33 H 0.061 0.939 34 H 0.052 0.948 35 H 0.047 0.953 36 H 0.062 0.938 37 H 0.053 0.947 38 H 0.104 0.896 39 H 0.110 0.890 40 H 0.409 0.591 41 H 0.135 0.865 42 H 0.123 0.877 43 H 0.126 0.874 44 H 0.108 0.892 45 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.311 -10.718 -4.327 16.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.164 4.164 3 C -0.141 4.141 4 C -0.040 4.040 5 C -0.207 4.207 6 C -0.208 4.208 7 C -0.166 4.166 8 C 0.286 3.714 9 O -0.427 6.427 10 N -0.288 5.288 11 C -0.070 4.070 12 C -0.131 4.131 13 C -0.241 4.241 14 C -0.115 4.115 15 C -0.268 4.268 16 C 0.055 3.945 17 C -0.572 4.572 18 H 0.079 0.921 19 C -0.197 4.197 20 N -0.462 5.462 21 Si 0.925 3.075 22 H -0.188 1.188 23 H -0.190 1.190 24 H -0.209 1.209 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.066 0.934 36 H 0.081 0.919 37 H 0.072 0.928 38 H 0.122 0.878 39 H 0.128 0.872 40 H 0.246 0.754 41 H 0.152 0.848 42 H 0.141 0.859 43 H 0.144 0.856 44 H 0.125 0.875 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -9.995 -10.255 -4.826 15.111 hybrid contribution -1.253 -0.379 1.214 1.786 sum -11.248 -10.633 -3.612 15.895 Atomic orbital electron populations 1.21765 0.95275 1.01828 1.01921 1.21624 0.96104 0.96541 1.02147 1.21627 0.92320 0.97628 1.02504 1.20232 0.95548 0.92087 0.96165 1.22082 1.02110 1.00265 0.96285 1.22085 1.01997 1.00313 0.96419 1.21841 0.88834 1.00239 1.05665 1.21417 0.91675 0.82605 0.75698 1.90440 1.70644 1.31651 1.49984 1.43221 1.05452 1.09932 1.70218 1.18021 0.83122 0.97989 1.07916 1.21383 0.95105 0.97770 0.98836 1.20782 0.93529 0.99500 1.10298 1.20724 0.99602 0.93157 0.98015 1.20907 0.93789 1.00302 1.11808 1.17716 0.92300 0.92893 0.91641 1.20328 1.07287 0.93350 1.36202 0.92149 1.28086 1.01217 0.91986 0.98407 1.70628 1.23489 1.37214 1.14864 0.83214 0.74242 0.75704 0.74375 1.18805 1.19041 1.20922 0.92531 0.92458 0.92697 0.91861 0.92103 0.91509 0.91161 0.92619 0.91977 0.92902 0.93355 0.91920 0.92821 0.87804 0.87158 0.75424 0.84810 0.85908 0.85569 0.87475 0.90934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.91 71.98 0.71 -1.30 16 2 C -0.13 -2.02 5.23 30.59 0.16 -1.86 16 3 C -0.10 -1.77 4.27 30.60 0.13 -1.64 16 4 C -0.04 -0.90 0.54 -52.18 -0.03 -0.92 16 5 C -0.15 -3.64 7.82 71.98 0.56 -3.08 16 6 C -0.15 -3.83 7.82 71.98 0.56 -3.26 16 7 C -0.13 -3.09 4.77 29.84 0.14 -2.94 16 8 C 0.50 17.23 7.08 87.66 0.62 17.85 16 9 O -0.55 -21.48 8.23 -3.04 -0.03 -21.51 16 10 N -0.65 -25.60 5.18 -302.28 -1.57 -27.17 16 11 C 0.02 1.15 6.54 38.88 0.25 1.40 16 12 C -0.11 -4.97 8.78 22.36 0.20 -4.77 16 13 C -0.22 -9.28 10.04 22.42 0.22 -9.06 16 14 C -0.10 -4.08 9.96 22.00 0.22 -3.86 16 15 C -0.25 -11.81 7.33 22.47 0.16 -11.64 16 16 C 0.06 2.94 5.18 -21.18 -0.11 2.83 16 17 C -0.54 -28.13 8.75 23.38 0.20 -27.93 16 18 H 0.06 3.18 7.19 -2.91 -0.02 3.16 16 19 C 0.02 0.93 5.38 85.26 0.46 1.39 16 20 N -0.84 -44.29 13.66 21.83 0.30 -43.99 16 21 Si 1.10 47.76 25.01 68.60 1.72 49.47 16 22 H -0.26 -10.68 6.37 99.48 0.63 -10.05 16 23 H -0.27 -11.48 7.10 99.48 0.71 -10.77 16 24 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 25 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.06 1.03 6.43 -2.39 -0.02 1.01 16 29 H 0.06 1.02 6.43 -2.38 -0.02 1.00 16 30 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.05 1.71 5.51 -2.39 -0.01 1.70 16 33 H 0.06 1.34 6.43 -2.39 -0.02 1.32 16 34 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.06 1.41 6.43 -2.39 -0.02 1.39 16 37 H 0.05 1.74 5.51 -2.39 -0.01 1.72 16 38 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 39 H 0.11 2.28 8.14 -2.38 -0.02 2.26 16 40 H 0.41 15.21 7.33 -92.71 -0.68 14.53 16 41 H 0.13 5.92 5.40 -2.91 -0.02 5.90 16 42 H 0.12 4.40 8.06 -2.91 -0.02 4.37 16 43 H 0.13 4.44 8.06 -2.91 -0.02 4.42 16 44 H 0.11 5.02 4.34 -2.91 -0.01 5.00 16 45 H 0.28 14.53 8.73 -92.71 -0.81 13.72 16 Total: -1.00 -58.68 341.20 5.10 -53.58 By element: Atomic # 1 Polarization: 38.21 SS G_CDS: 0.20 Total: 38.41 kcal Atomic # 6 Polarization: -53.28 SS G_CDS: 4.48 Total: -48.80 kcal Atomic # 7 Polarization: -69.88 SS G_CDS: -1.27 Total: -71.15 kcal Atomic # 8 Polarization: -21.48 SS G_CDS: -0.03 Total: -21.51 kcal Atomic # 14 Polarization: 47.76 SS G_CDS: 1.72 Total: 49.47 kcal Total: -58.68 5.10 -53.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000554750383.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.170 kcal (2) G-P(sol) polarization free energy of solvation -58.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds