Wall clock time and date at job start Tue Mar 31 2020 06:50:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.47147 * 2 1 4 4 C 1.53008 * 109.46929 * 65.00315 * 3 2 1 5 5 C 1.52995 * 109.46940 * 185.39228 * 4 3 2 6 6 C 1.53003 * 109.46893 * 184.99720 * 3 2 1 7 7 H 1.09004 * 109.46710 * 186.21585 * 6 3 2 8 8 C 1.52996 * 109.47332 * 306.21598 * 6 3 2 9 9 C 1.50697 * 109.47092 * 66.22235 * 6 3 2 10 10 O 1.21290 * 119.99505 * 355.13135 * 9 6 3 11 11 N 1.34770 * 120.00321 * 175.13393 * 9 6 3 12 12 C 1.39126 * 120.00341 * 184.57313 * 11 9 6 13 13 C 1.38645 * 120.28224 * 325.53478 * 12 11 9 14 14 C 1.38226 * 120.03152 * 179.97438 * 13 12 11 15 15 C 1.38867 * 120.61769 * 0.02562 * 14 13 12 16 16 C 1.36468 * 120.57451 * 0.03087 * 15 14 13 17 17 C 1.40732 * 119.94502 * 359.65149 * 16 15 14 18 18 C 1.41070 * 120.30528 * 180.34638 * 17 16 15 19 19 H 1.07998 * 120.00546 * 143.22198 * 18 17 16 20 20 C 1.39965 * 119.99699 * 323.21716 * 18 17 16 21 21 N 1.30848 * 119.99993 * 171.70413 * 20 18 17 22 22 Si 1.86798 * 119.99663 * 351.70866 * 20 18 17 23 23 H 1.48497 * 109.47402 * 87.45881 * 22 20 18 24 24 H 1.48505 * 109.46910 * 207.45654 * 22 20 18 25 25 H 1.48499 * 109.47613 * 327.45291 * 22 20 18 26 26 H 1.08994 * 109.46939 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47037 * 300.00016 * 1 2 3 28 28 H 1.08998 * 109.47068 * 59.99521 * 1 2 3 29 29 H 1.08993 * 109.47202 * 240.00383 * 2 1 3 30 30 H 1.08998 * 109.47068 * 120.00479 * 2 1 3 31 31 H 1.08999 * 109.47111 * 305.00136 * 3 2 1 32 32 H 1.08997 * 109.46965 * 305.38792 * 4 3 2 33 33 H 1.08998 * 109.47362 * 65.38605 * 4 3 2 34 34 H 1.09003 * 109.47214 * 304.82822 * 5 4 3 35 35 H 1.09000 * 109.47563 * 64.82465 * 5 4 3 36 36 H 1.09002 * 109.46882 * 184.83069 * 5 4 3 37 37 H 1.09004 * 109.47233 * 60.00308 * 8 6 3 38 38 H 1.09005 * 109.46808 * 179.97438 * 8 6 3 39 39 H 1.08992 * 109.47615 * 300.00223 * 8 6 3 40 40 H 0.97005 * 119.99666 * 4.57913 * 11 9 6 41 41 H 1.07998 * 119.98695 * 0.02562 * 13 12 11 42 42 H 1.07998 * 119.68974 * 180.02562 * 14 13 12 43 43 H 1.07997 * 119.71319 * 179.97438 * 15 14 13 44 44 H 1.08003 * 120.02322 * 179.97438 * 16 15 14 45 45 H 0.96996 * 119.99803 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6353 2.1265 1.3075 5 6 2.0266 3.6046 1.2521 6 6 3.5649 1.4443 -0.1257 7 1 3.9374 2.4627 -0.0150 8 6 4.1677 0.5592 0.9670 9 6 3.9580 0.9100 -1.4788 10 8 3.1092 0.4800 -2.2309 11 7 5.2527 0.9100 -1.8532 12 6 5.6057 0.5059 -3.1368 13 6 4.8958 -0.5009 -3.7729 14 6 5.2507 -0.8979 -5.0484 15 6 6.3167 -0.2974 -5.7052 16 6 7.0333 0.6952 -5.1022 17 6 6.6885 1.1227 -3.8064 18 6 7.4195 2.1532 -3.1788 19 1 6.9114 2.8716 -2.5525 20 6 8.8034 2.2445 -3.3676 21 7 9.4570 3.2870 -2.9224 22 14 9.7170 0.8782 -4.2551 23 1 9.6964 1.1374 -5.7172 24 1 11.1233 0.8333 -3.7802 25 1 9.0578 -0.4224 -3.9736 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 1.8934 -0.5137 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.6054 1.9816 -0.8418 32 1 0.5573 2.0410 1.4437 33 1 2.1462 1.6464 2.1420 34 1 3.0904 3.6908 1.0305 35 1 1.4515 4.1038 0.4723 36 1 1.8169 4.0722 2.2141 37 1 3.7953 -0.4592 0.8564 38 1 5.2541 0.5602 0.8772 39 1 3.8834 0.9456 1.9457 40 1 5.9385 1.1916 -1.2275 41 1 4.0647 -0.9747 -3.2718 42 1 4.6936 -1.6825 -5.5389 43 1 6.5816 -0.6192 -6.7015 44 1 7.8610 1.1559 -5.6210 45 1 10.4160 3.3504 -3.0536 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000554752268.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:28 Heat of formation + Delta-G solvation = -43.983043 kcal Electronic energy + Delta-G solvation = -23663.559565 eV Core-core repulsion = 20451.640930 eV Total energy + Delta-G solvation = -3211.918635 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.13471 -38.11999 -36.63493 -33.92867 -33.56652 -31.89581 -31.54946 -30.43419 -28.52610 -26.29216 -25.22649 -24.18599 -22.63377 -22.01615 -20.82102 -19.73469 -18.58254 -17.47522 -17.00004 -16.45202 -15.42143 -15.09500 -14.71262 -14.50113 -14.08644 -14.02877 -13.83831 -13.52697 -13.35237 -12.88034 -12.66795 -12.43580 -12.26568 -12.08175 -12.00634 -11.74814 -11.63267 -11.57933 -11.28140 -10.97537 -10.93799 -10.91445 -10.65344 -10.35595 -10.29237 -10.10543 -9.90792 -9.83301 -9.35546 -9.13436 -8.78056 -7.62710 -7.10057 -6.90744 -4.53377 2.41207 2.64475 3.09375 3.14740 3.28947 3.34887 3.89035 3.96581 4.52671 4.74073 4.83996 4.96565 5.18743 5.28675 5.33370 5.36359 5.41225 5.43961 5.53986 5.65760 5.72723 5.85189 5.92772 5.97535 5.99501 6.05034 6.06545 6.14258 6.15491 6.19651 6.26277 6.33056 6.42466 6.58390 6.62280 6.66594 6.75293 6.99552 7.18952 7.37354 7.51375 7.70165 7.78990 8.02271 8.29068 8.30043 8.60382 8.74802 8.95407 10.10867 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.019727 B = 0.004762 C = 0.004075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.022137 B = 5878.565416 C = 6869.863893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.127 4.127 3 C -0.065 4.065 4 C -0.123 4.123 5 C -0.157 4.157 6 C -0.109 4.109 7 H 0.097 0.903 8 C -0.147 4.147 9 C 0.505 3.495 10 O -0.537 6.537 11 N -0.640 5.640 12 C 0.037 3.963 13 C -0.080 4.080 14 C -0.220 4.220 15 C -0.093 4.093 16 C -0.218 4.218 17 C 0.081 3.919 18 C -0.459 4.459 19 H 0.090 0.910 20 C 0.085 3.915 21 N -0.820 5.820 22 Si 0.911 3.089 23 H -0.269 1.269 24 H -0.293 1.293 25 H -0.247 1.247 26 H 0.047 0.953 27 H 0.049 0.951 28 H 0.052 0.948 29 H 0.086 0.914 30 H 0.055 0.945 31 H 0.076 0.924 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.058 0.942 35 H 0.053 0.947 36 H 0.050 0.950 37 H 0.063 0.937 38 H 0.060 0.940 39 H 0.066 0.934 40 H 0.406 0.594 41 H 0.117 0.883 42 H 0.096 0.904 43 H 0.094 0.906 44 H 0.106 0.894 45 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.170 -3.272 8.450 12.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.165 4.165 3 C -0.083 4.083 4 C -0.160 4.160 5 C -0.214 4.214 6 C -0.130 4.130 7 H 0.115 0.885 8 C -0.205 4.205 9 C 0.293 3.707 10 O -0.415 6.415 11 N -0.282 5.282 12 C -0.057 4.057 13 C -0.100 4.100 14 C -0.239 4.239 15 C -0.112 4.112 16 C -0.238 4.238 17 C 0.077 3.923 18 C -0.489 4.489 19 H 0.108 0.892 20 C -0.132 4.132 21 N -0.446 5.446 22 Si 0.739 3.261 23 H -0.195 1.195 24 H -0.221 1.221 25 H -0.170 1.170 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.071 0.929 29 H 0.104 0.896 30 H 0.074 0.926 31 H 0.094 0.906 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.085 0.915 40 H 0.242 0.758 41 H 0.134 0.866 42 H 0.115 0.885 43 H 0.112 0.888 44 H 0.123 0.877 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -9.558 -3.365 8.030 12.929 hybrid contribution 0.978 -0.125 -0.209 1.008 sum -8.580 -3.489 7.821 12.123 Atomic orbital electron populations 1.21783 0.96533 1.00968 1.01304 1.21761 0.95357 0.96428 1.02916 1.20946 0.92639 0.96927 0.97828 1.21693 1.01173 0.95535 0.97586 1.21863 1.01952 0.96319 1.01294 1.21381 0.97510 1.01219 0.92875 0.88547 1.21870 1.00831 0.99958 0.97791 1.20614 0.82357 0.79092 0.88660 1.90593 1.49840 1.46771 1.54267 1.42962 1.07599 1.64202 1.13438 1.17748 1.03185 0.98897 0.85854 1.20817 0.98705 0.95200 0.95300 1.20384 1.01724 1.05085 0.96745 1.20405 0.95924 0.96698 0.98194 1.20766 1.03982 1.03234 0.95830 1.17603 0.92527 0.91390 0.90755 1.19212 0.92220 1.10124 1.27300 0.89212 1.26054 0.98072 0.95934 0.93144 1.69633 1.10477 1.26843 1.37639 0.86343 0.77147 0.83097 0.79563 1.19545 1.22075 1.16998 0.93340 0.93177 0.92867 0.89600 0.92628 0.90585 0.91710 0.91835 0.92288 0.92803 0.93061 0.91808 0.92113 0.91505 0.75833 0.86557 0.88536 0.88770 0.87655 0.90562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 9.68 37.16 0.36 -1.29 16 2 C -0.13 -1.61 4.49 -26.73 -0.12 -1.73 16 3 C -0.06 -0.81 1.28 -90.61 -0.12 -0.93 16 4 C -0.12 -1.24 5.16 -26.73 -0.14 -1.37 16 5 C -0.16 -1.56 9.79 37.15 0.36 -1.20 16 6 C -0.11 -1.47 2.38 -91.77 -0.22 -1.69 16 7 H 0.10 1.26 6.22 -51.93 -0.32 0.93 16 8 C -0.15 -1.69 8.39 37.16 0.31 -1.37 16 9 C 0.51 9.15 6.70 -10.99 -0.07 9.08 16 10 O -0.54 -11.10 11.30 5.55 0.06 -11.04 16 11 N -0.64 -12.66 4.93 -9.48 -0.05 -12.71 16 12 C 0.04 0.86 6.34 -83.17 -0.53 0.34 16 13 C -0.08 -1.80 8.69 -39.44 -0.34 -2.15 16 14 C -0.22 -4.74 10.04 -39.35 -0.39 -5.14 16 15 C -0.09 -2.05 9.97 -39.99 -0.40 -2.44 16 16 C -0.22 -5.22 7.02 -39.28 -0.28 -5.50 16 17 C 0.08 2.02 5.04 -106.65 -0.54 1.48 16 18 C -0.46 -11.80 8.74 -37.86 -0.33 -12.13 16 19 H 0.09 2.40 7.94 -52.49 -0.42 1.99 16 20 C 0.09 2.16 5.49 -17.32 -0.10 2.06 16 21 N -0.82 -21.26 13.93 55.55 0.77 -20.49 16 22 Si 0.91 20.42 24.49 -169.99 -4.16 16.26 16 23 H -0.27 -5.91 6.53 56.52 0.37 -5.54 16 24 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 25 H -0.25 -5.67 6.88 56.52 0.39 -5.28 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.05 0.48 6.45 -51.93 -0.34 0.15 16 28 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.09 1.34 5.82 -51.93 -0.30 1.04 16 30 H 0.06 0.63 6.64 -51.93 -0.34 0.29 16 31 H 0.08 1.10 7.99 -51.93 -0.41 0.69 16 32 H 0.06 0.62 6.33 -51.93 -0.33 0.29 16 33 H 0.06 0.59 6.38 -51.93 -0.33 0.26 16 34 H 0.06 0.61 6.25 -51.93 -0.32 0.29 16 35 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.06 0.75 6.45 -51.93 -0.33 0.41 16 38 H 0.06 0.69 7.77 -51.93 -0.40 0.29 16 39 H 0.07 0.64 6.50 -51.93 -0.34 0.30 16 40 H 0.41 7.45 7.78 -40.82 -0.32 7.13 16 41 H 0.12 2.57 6.18 -52.49 -0.32 2.25 16 42 H 0.10 1.84 8.06 -52.49 -0.42 1.41 16 43 H 0.09 1.79 8.06 -52.49 -0.42 1.36 16 44 H 0.11 2.50 4.76 -52.48 -0.25 2.25 16 45 H 0.28 6.75 8.30 -40.82 -0.34 6.41 16 LS Contribution 340.78 15.07 5.14 5.14 Total: -1.00 -27.87 340.78 -7.58 -35.45 By element: Atomic # 1 Polarization: 18.19 SS G_CDS: -6.80 Total: 11.38 kcal Atomic # 6 Polarization: -21.46 SS G_CDS: -2.53 Total: -23.99 kcal Atomic # 7 Polarization: -33.92 SS G_CDS: 0.73 Total: -33.20 kcal Atomic # 8 Polarization: -11.10 SS G_CDS: 0.06 Total: -11.04 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -4.16 Total: 16.26 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -27.87 -7.58 -35.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000554752268.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.535 kcal (2) G-P(sol) polarization free energy of solvation -27.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds