Wall clock time and date at job start Tue Mar 31 2020 06:50:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.47147 * 2 1 4 4 C 1.53008 * 109.46929 * 65.00315 * 3 2 1 5 5 C 1.52995 * 109.46940 * 185.39228 * 4 3 2 6 6 C 1.53003 * 109.46893 * 184.99720 * 3 2 1 7 7 H 1.09004 * 109.46710 * 186.21585 * 6 3 2 8 8 C 1.52996 * 109.47332 * 306.21598 * 6 3 2 9 9 C 1.50697 * 109.47092 * 66.22235 * 6 3 2 10 10 O 1.21290 * 119.99505 * 355.13135 * 9 6 3 11 11 N 1.34770 * 120.00321 * 175.13393 * 9 6 3 12 12 C 1.39126 * 120.00341 * 184.57313 * 11 9 6 13 13 C 1.38645 * 120.28224 * 325.53478 * 12 11 9 14 14 C 1.38226 * 120.03152 * 179.97438 * 13 12 11 15 15 C 1.38867 * 120.61769 * 0.02562 * 14 13 12 16 16 C 1.36468 * 120.57451 * 0.03087 * 15 14 13 17 17 C 1.40732 * 119.94502 * 359.65149 * 16 15 14 18 18 C 1.41070 * 120.30528 * 180.34638 * 17 16 15 19 19 H 1.07998 * 120.00546 * 143.22198 * 18 17 16 20 20 C 1.39965 * 119.99699 * 323.21716 * 18 17 16 21 21 N 1.30848 * 119.99993 * 171.70413 * 20 18 17 22 22 Si 1.86798 * 119.99663 * 351.70866 * 20 18 17 23 23 H 1.48497 * 109.47402 * 87.45881 * 22 20 18 24 24 H 1.48505 * 109.46910 * 207.45654 * 22 20 18 25 25 H 1.48499 * 109.47613 * 327.45291 * 22 20 18 26 26 H 1.08994 * 109.46939 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47037 * 300.00016 * 1 2 3 28 28 H 1.08998 * 109.47068 * 59.99521 * 1 2 3 29 29 H 1.08993 * 109.47202 * 240.00383 * 2 1 3 30 30 H 1.08998 * 109.47068 * 120.00479 * 2 1 3 31 31 H 1.08999 * 109.47111 * 305.00136 * 3 2 1 32 32 H 1.08997 * 109.46965 * 305.38792 * 4 3 2 33 33 H 1.08998 * 109.47362 * 65.38605 * 4 3 2 34 34 H 1.09003 * 109.47214 * 304.82822 * 5 4 3 35 35 H 1.09000 * 109.47563 * 64.82465 * 5 4 3 36 36 H 1.09002 * 109.46882 * 184.83069 * 5 4 3 37 37 H 1.09004 * 109.47233 * 60.00308 * 8 6 3 38 38 H 1.09005 * 109.46808 * 179.97438 * 8 6 3 39 39 H 1.08992 * 109.47615 * 300.00223 * 8 6 3 40 40 H 0.97005 * 119.99666 * 4.57913 * 11 9 6 41 41 H 1.07998 * 119.98695 * 0.02562 * 13 12 11 42 42 H 1.07998 * 119.68974 * 180.02562 * 14 13 12 43 43 H 1.07997 * 119.71319 * 179.97438 * 15 14 13 44 44 H 1.08003 * 120.02322 * 179.97438 * 16 15 14 45 45 H 0.96996 * 119.99803 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6353 2.1265 1.3075 5 6 2.0266 3.6046 1.2521 6 6 3.5649 1.4443 -0.1257 7 1 3.9374 2.4627 -0.0150 8 6 4.1677 0.5592 0.9670 9 6 3.9580 0.9100 -1.4788 10 8 3.1092 0.4800 -2.2309 11 7 5.2527 0.9100 -1.8532 12 6 5.6057 0.5059 -3.1368 13 6 4.8958 -0.5009 -3.7729 14 6 5.2507 -0.8979 -5.0484 15 6 6.3167 -0.2974 -5.7052 16 6 7.0333 0.6952 -5.1022 17 6 6.6885 1.1227 -3.8064 18 6 7.4195 2.1532 -3.1788 19 1 6.9114 2.8716 -2.5525 20 6 8.8034 2.2445 -3.3676 21 7 9.4570 3.2870 -2.9224 22 14 9.7170 0.8782 -4.2551 23 1 9.6964 1.1374 -5.7172 24 1 11.1233 0.8333 -3.7802 25 1 9.0578 -0.4224 -3.9736 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 1.8934 -0.5137 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.6054 1.9816 -0.8418 32 1 0.5573 2.0410 1.4437 33 1 2.1462 1.6464 2.1420 34 1 3.0904 3.6908 1.0305 35 1 1.4515 4.1038 0.4723 36 1 1.8169 4.0722 2.2141 37 1 3.7953 -0.4592 0.8564 38 1 5.2541 0.5602 0.8772 39 1 3.8834 0.9456 1.9457 40 1 5.9385 1.1916 -1.2275 41 1 4.0647 -0.9747 -3.2718 42 1 4.6936 -1.6825 -5.5389 43 1 6.5816 -0.6192 -6.7015 44 1 7.8610 1.1559 -5.6210 45 1 10.4160 3.3504 -3.0536 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000554752268.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:27 Heat of formation + Delta-G solvation = -58.460416 kcal Electronic energy + Delta-G solvation = -23664.187352 eV Core-core repulsion = 20451.640930 eV Total energy + Delta-G solvation = -3212.546421 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.59327 -39.66359 -37.96203 -35.57376 -35.41931 -32.97979 -32.45132 -32.28561 -30.19102 -27.23521 -27.01814 -25.41327 -23.76807 -23.44740 -22.46150 -21.25407 -19.78324 -19.33629 -18.50544 -17.96318 -17.05593 -16.41381 -16.18429 -15.79833 -15.48900 -15.29617 -15.10998 -14.96966 -14.83347 -14.34862 -14.02762 -13.90578 -13.53968 -13.42379 -13.22634 -12.98609 -12.82155 -12.73232 -12.70086 -12.46532 -12.40252 -12.18825 -11.85586 -11.78230 -11.63789 -11.36832 -11.25724 -11.15569 -11.05545 -10.79386 -10.31658 -9.46905 -8.87550 -8.78479 -6.47765 0.66514 0.80966 1.29594 1.38611 1.49932 1.81350 2.14497 2.43597 2.65804 3.46198 3.68428 3.84301 3.85432 4.21212 4.30210 4.32848 4.39016 4.42647 4.45529 4.52326 4.64538 4.65361 4.73928 4.82265 4.84191 4.91809 4.95861 4.99913 5.06920 5.12481 5.16689 5.22762 5.26788 5.32832 5.34500 5.35485 5.51927 5.60537 5.62517 5.65514 5.73317 5.96622 5.97789 6.14966 6.39471 6.61095 6.83636 6.86636 7.39877 8.25550 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.019727 B = 0.004762 C = 0.004075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.022137 B = 5878.565416 C = 6869.863893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.125 4.125 3 C -0.061 4.061 4 C -0.115 4.115 5 C -0.159 4.159 6 C -0.101 4.101 7 H 0.103 0.897 8 C -0.143 4.143 9 C 0.502 3.498 10 O -0.563 6.563 11 N -0.644 5.644 12 C 0.034 3.966 13 C -0.096 4.096 14 C -0.208 4.208 15 C -0.099 4.099 16 C -0.230 4.230 17 C 0.058 3.942 18 C -0.478 4.478 19 H 0.063 0.937 20 C 0.053 3.947 21 N -0.857 5.857 22 Si 0.960 3.040 23 H -0.260 1.260 24 H -0.282 1.282 25 H -0.256 1.256 26 H 0.054 0.946 27 H 0.070 0.930 28 H 0.039 0.961 29 H 0.051 0.949 30 H 0.072 0.928 31 H 0.050 0.950 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.051 0.949 35 H 0.045 0.955 36 H 0.068 0.932 37 H 0.062 0.938 38 H 0.058 0.942 39 H 0.095 0.905 40 H 0.410 0.590 41 H 0.118 0.882 42 H 0.128 0.872 43 H 0.129 0.871 44 H 0.105 0.895 45 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.931 -4.526 9.160 14.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.162 4.162 3 C -0.080 4.080 4 C -0.152 4.152 5 C -0.216 4.216 6 C -0.122 4.122 7 H 0.121 0.879 8 C -0.200 4.200 9 C 0.292 3.708 10 O -0.442 6.442 11 N -0.287 5.287 12 C -0.061 4.061 13 C -0.116 4.116 14 C -0.228 4.228 15 C -0.117 4.117 16 C -0.250 4.250 17 C 0.054 3.946 18 C -0.508 4.508 19 H 0.081 0.919 20 C -0.161 4.161 21 N -0.484 5.484 22 Si 0.785 3.215 23 H -0.186 1.186 24 H -0.208 1.208 25 H -0.180 1.180 26 H 0.073 0.927 27 H 0.088 0.912 28 H 0.058 0.942 29 H 0.070 0.930 30 H 0.090 0.910 31 H 0.068 0.932 32 H 0.094 0.906 33 H 0.098 0.902 34 H 0.070 0.930 35 H 0.064 0.936 36 H 0.087 0.913 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.113 0.887 40 H 0.247 0.753 41 H 0.136 0.864 42 H 0.146 0.854 43 H 0.147 0.853 44 H 0.123 0.877 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -10.329 -4.610 8.752 14.302 hybrid contribution 1.040 0.201 -0.461 1.155 sum -9.289 -4.409 8.292 13.209 Atomic orbital electron populations 1.21759 0.95319 1.01566 1.01636 1.21700 0.96458 0.96092 1.01991 1.20923 0.91510 0.97027 0.98542 1.21653 1.02043 0.95285 0.96200 1.21878 1.01337 0.96368 1.01994 1.21436 0.98545 1.01640 0.90617 0.87946 1.21882 1.00589 0.99449 0.98109 1.21492 0.81275 0.78019 0.90063 1.90574 1.50310 1.47785 1.55546 1.43087 1.08580 1.64451 1.12588 1.18019 1.02437 0.98544 0.87089 1.21011 0.98986 0.95427 0.96188 1.20823 1.01087 1.04748 0.96098 1.20757 0.95397 0.95910 0.99650 1.20942 1.04462 1.03990 0.95616 1.17764 0.93502 0.91831 0.91544 1.19118 0.92811 1.10665 1.28222 0.91879 1.26613 0.98354 0.97458 0.93642 1.69663 1.11131 1.28230 1.39392 0.85590 0.76523 0.80258 0.79136 1.18585 1.20848 1.18003 0.92655 0.91160 0.94185 0.92999 0.90962 0.93161 0.90591 0.90188 0.93008 0.93591 0.91347 0.91945 0.92286 0.88665 0.75318 0.86413 0.85440 0.85304 0.87707 0.89867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.02 9.68 71.98 0.70 -2.33 16 2 C -0.13 -3.03 4.49 30.60 0.14 -2.89 16 3 C -0.06 -1.48 1.28 -10.79 -0.01 -1.49 16 4 C -0.11 -2.03 5.16 30.60 0.16 -1.87 16 5 C -0.16 -2.86 9.79 71.98 0.70 -2.15 16 6 C -0.10 -2.69 2.38 -11.54 -0.03 -2.72 16 7 H 0.10 2.63 6.22 -2.38 -0.01 2.61 16 8 C -0.14 -3.03 8.39 71.98 0.60 -2.42 16 9 C 0.50 18.46 6.70 87.66 0.59 19.05 16 10 O -0.56 -23.76 11.30 -3.06 -0.03 -23.79 16 11 N -0.64 -26.09 4.93 -302.28 -1.49 -27.58 16 12 C 0.03 1.59 6.34 38.88 0.25 1.84 16 13 C -0.10 -4.27 8.69 22.36 0.19 -4.07 16 14 C -0.21 -8.53 10.04 22.42 0.22 -8.30 16 15 C -0.10 -4.09 9.97 22.01 0.22 -3.87 16 16 C -0.23 -10.84 7.02 22.47 0.16 -10.68 16 17 C 0.06 2.88 5.04 -21.18 -0.11 2.78 16 18 C -0.48 -25.40 8.74 23.38 0.20 -25.20 16 19 H 0.06 3.57 7.94 -2.91 -0.02 3.55 16 20 C 0.05 2.72 5.49 85.26 0.47 3.19 16 21 N -0.86 -45.42 13.93 21.83 0.30 -45.12 16 22 Si 0.96 41.93 24.49 68.60 1.68 43.61 16 23 H -0.26 -10.88 6.53 99.48 0.65 -10.23 16 24 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 25 H -0.26 -11.46 6.88 99.48 0.68 -10.78 16 26 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.07 1.17 6.45 -2.38 -0.02 1.15 16 28 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.05 1.63 5.82 -2.39 -0.01 1.61 16 30 H 0.07 1.49 6.64 -2.39 -0.02 1.48 16 31 H 0.05 1.48 7.99 -2.39 -0.02 1.46 16 32 H 0.08 1.21 6.33 -2.39 -0.02 1.19 16 33 H 0.08 1.18 6.38 -2.39 -0.02 1.17 16 34 H 0.05 1.00 6.25 -2.39 -0.01 0.99 16 35 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.06 1.35 6.45 -2.38 -0.02 1.33 16 38 H 0.06 1.28 7.77 -2.38 -0.02 1.26 16 39 H 0.09 1.50 6.50 -2.39 -0.02 1.48 16 40 H 0.41 15.60 7.78 -92.70 -0.72 14.87 16 41 H 0.12 5.19 6.18 -2.91 -0.02 5.17 16 42 H 0.13 4.40 8.06 -2.91 -0.02 4.38 16 43 H 0.13 4.41 8.06 -2.91 -0.02 4.39 16 44 H 0.11 4.87 4.76 -2.91 -0.01 4.86 16 45 H 0.29 14.04 8.30 -92.71 -0.77 13.27 16 Total: -1.00 -61.06 340.78 5.11 -55.95 By element: Atomic # 1 Polarization: 37.89 SS G_CDS: 0.20 Total: 38.09 kcal Atomic # 6 Polarization: -45.61 SS G_CDS: 4.45 Total: -41.15 kcal Atomic # 7 Polarization: -71.51 SS G_CDS: -1.19 Total: -72.70 kcal Atomic # 8 Polarization: -23.76 SS G_CDS: -0.03 Total: -23.79 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 1.68 Total: 43.61 kcal Total: -61.06 5.11 -55.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000554752268.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.513 kcal (2) G-P(sol) polarization free energy of solvation -61.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds