Wall clock time and date at job start Tue Mar 31 2020 06:50:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46826 * 2 1 4 4 C 1.53001 * 109.47451 * 304.62422 * 3 2 1 5 5 C 1.52990 * 109.46963 * 295.53318 * 4 3 2 6 6 C 1.53008 * 109.46884 * 64.62727 * 3 2 1 7 7 H 1.08998 * 109.47160 * 299.99498 * 6 3 2 8 8 C 1.52999 * 109.46884 * 180.02562 * 6 3 2 9 9 C 1.50692 * 109.47217 * 59.99783 * 6 3 2 10 10 O 1.21283 * 120.00082 * 0.02562 * 9 6 3 11 11 N 1.34782 * 119.99842 * 180.02562 * 9 6 3 12 12 C 1.39131 * 119.99596 * 184.75988 * 11 9 6 13 13 C 1.38648 * 120.28779 * 325.86575 * 12 11 9 14 14 C 1.38221 * 120.03091 * 180.25976 * 13 12 11 15 15 C 1.38868 * 120.61599 * 359.74092 * 14 13 12 16 16 C 1.36456 * 120.57767 * 359.97438 * 15 14 13 17 17 C 1.40732 * 119.94444 * 0.02562 * 16 15 14 18 18 C 1.41081 * 120.30173 * 179.97438 * 17 16 15 19 19 H 1.07991 * 120.00044 * 154.65796 * 18 17 16 20 20 C 1.39957 * 119.99621 * 334.66261 * 18 17 16 21 21 N 1.30848 * 120.00132 * 334.64185 * 20 18 17 22 22 Si 1.86800 * 119.99626 * 154.63980 * 20 18 17 23 23 H 1.48504 * 109.47098 * 179.97438 * 22 20 18 24 24 H 1.48502 * 109.47476 * 299.99880 * 22 20 18 25 25 H 1.48505 * 109.47336 * 60.00169 * 22 20 18 26 26 H 1.08999 * 109.47179 * 305.13426 * 1 2 3 27 27 H 1.08999 * 109.47055 * 65.13866 * 1 2 3 28 28 H 1.09007 * 109.47284 * 185.13273 * 1 2 3 29 29 H 1.09002 * 109.47001 * 240.00643 * 2 1 3 30 30 H 1.09003 * 109.46877 * 120.00087 * 2 1 3 31 31 H 1.08994 * 109.47153 * 184.62072 * 3 2 1 32 32 H 1.09006 * 109.46579 * 55.53362 * 4 3 2 33 33 H 1.09001 * 109.47085 * 175.52824 * 4 3 2 34 34 H 1.09001 * 109.47531 * 305.19907 * 5 4 3 35 35 H 1.09003 * 109.47390 * 65.20822 * 5 4 3 36 36 H 1.09005 * 109.47394 * 185.20403 * 5 4 3 37 37 H 1.09005 * 109.47153 * 299.99830 * 8 6 3 38 38 H 1.09005 * 109.47401 * 59.99512 * 8 6 3 39 39 H 1.09003 * 109.47074 * 180.02562 * 8 6 3 40 40 H 0.96993 * 119.99768 * 4.75767 * 11 9 6 41 41 H 1.07998 * 119.98128 * 359.97438 * 13 12 11 42 42 H 1.08001 * 119.68631 * 179.76224 * 14 13 12 43 43 H 1.08002 * 119.70537 * 180.02562 * 15 14 13 44 44 H 1.08008 * 120.02679 * 180.02562 * 16 15 14 45 45 H 0.96996 * 120.00499 * 354.27896 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.4372 2.1966 -1.1870 5 6 1.9397 1.5776 -2.4927 6 6 1.6271 2.1294 1.3034 7 1 0.5403 2.1282 1.3863 8 6 2.1364 3.5721 1.3032 9 6 2.2208 1.3867 2.4725 10 8 2.9070 0.4049 2.2820 11 7 1.9892 1.8134 3.7298 12 6 2.6165 1.1886 4.8031 13 6 2.8719 -0.1737 4.7672 14 6 3.4905 -0.7900 5.8387 15 6 3.8669 -0.0560 6.9559 16 6 3.6328 1.2870 7.0153 17 6 3.0044 1.9389 5.9379 18 6 2.7583 3.3270 5.9915 19 1 2.6706 3.8956 5.0776 20 6 2.6280 3.9672 7.2292 21 7 2.2405 3.2891 8.2790 22 14 3.0074 5.7899 7.3824 23 1 2.7927 6.2239 8.7863 24 1 4.4209 6.0353 6.9987 25 1 2.1098 6.5596 6.4841 26 1 -0.3633 0.5914 0.8404 27 1 -0.3633 0.4321 -0.9324 28 1 -0.3634 -1.0236 0.0919 29 1 1.8933 -0.5137 -0.8901 30 1 1.8933 -0.5139 0.8900 31 1 3.1267 1.4437 -0.0828 32 1 0.3500 2.1277 -1.1469 33 1 1.7368 3.2437 -1.1423 34 1 3.0296 1.5626 -2.4919 35 1 1.5623 0.5588 -2.5807 36 1 1.5852 2.1704 -3.3360 37 1 3.2233 3.5736 1.2201 38 1 1.7067 4.1090 0.4575 39 1 1.8427 4.0613 2.2319 40 1 1.3852 2.5560 3.8864 41 1 2.5831 -0.7544 3.9036 42 1 3.6833 -1.8521 5.8064 43 1 4.3497 -0.5525 7.7846 44 1 3.9296 1.8493 7.8884 45 1 1.9639 2.3643 8.1841 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000554752269.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:30 Heat of formation + Delta-G solvation = -62.417936 kcal Electronic energy + Delta-G solvation = -23700.626798 eV Core-core repulsion = 20487.908766 eV Total energy + Delta-G solvation = -3212.718032 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.59727 -39.65482 -38.00281 -35.77546 -35.54689 -33.30268 -32.00414 -31.23518 -30.19094 -27.29562 -27.00785 -25.23880 -24.19065 -23.21287 -22.59889 -20.94676 -20.01481 -19.74542 -18.21845 -17.74337 -16.61568 -16.48956 -16.44237 -15.90723 -15.66031 -15.33623 -15.11369 -14.66116 -14.44546 -14.17760 -13.87776 -13.85617 -13.68798 -13.40612 -13.14661 -13.05855 -12.69664 -12.61976 -12.55344 -12.44765 -12.23243 -12.10713 -11.95943 -11.83534 -11.52830 -11.35998 -11.27809 -11.08233 -10.96662 -10.71866 -10.27130 -9.54398 -9.28865 -8.79071 -6.40274 0.78096 0.91916 1.53454 1.65506 1.81134 1.81508 2.34020 2.45031 2.70405 3.54597 3.67681 3.77979 3.91305 4.17853 4.33612 4.36942 4.39544 4.41843 4.45494 4.51147 4.61301 4.65875 4.71519 4.81733 4.92368 4.96149 4.98136 5.04939 5.08584 5.11374 5.15626 5.21287 5.30492 5.35004 5.39663 5.42491 5.49551 5.56544 5.69285 5.72171 5.78763 5.94931 6.04904 6.14073 6.36212 6.65972 6.90336 6.92848 7.43287 8.06132 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.017604 B = 0.004794 C = 0.003971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.138811 B = 5839.586147 C = 7049.611693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.132 4.132 3 C -0.059 4.059 4 C -0.119 4.119 5 C -0.151 4.151 6 C -0.097 4.097 7 H 0.115 0.885 8 C -0.144 4.144 9 C 0.499 3.501 10 O -0.566 6.566 11 N -0.639 5.639 12 C 0.005 3.995 13 C -0.091 4.091 14 C -0.242 4.242 15 C -0.098 4.098 16 C -0.228 4.228 17 C 0.063 3.937 18 C -0.543 4.543 19 H 0.081 0.919 20 C 0.008 3.992 21 N -0.815 5.815 22 Si 1.113 2.887 23 H -0.276 1.276 24 H -0.270 1.270 25 H -0.251 1.251 26 H 0.048 0.952 27 H 0.074 0.926 28 H 0.047 0.953 29 H 0.063 0.937 30 H 0.054 0.946 31 H 0.051 0.949 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.045 0.955 35 H 0.054 0.946 36 H 0.066 0.934 37 H 0.045 0.955 38 H 0.100 0.900 39 H 0.059 0.941 40 H 0.408 0.592 41 H 0.111 0.889 42 H 0.115 0.885 43 H 0.114 0.886 44 H 0.094 0.906 45 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.860 2.811 -15.216 16.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.169 4.169 3 C -0.078 4.078 4 C -0.156 4.156 5 C -0.208 4.208 6 C -0.118 4.118 7 H 0.132 0.868 8 C -0.201 4.201 9 C 0.288 3.712 10 O -0.446 6.446 11 N -0.282 5.282 12 C -0.089 4.089 13 C -0.111 4.111 14 C -0.262 4.262 15 C -0.117 4.117 16 C -0.248 4.248 17 C 0.059 3.941 18 C -0.571 4.571 19 H 0.099 0.901 20 C -0.209 4.209 21 N -0.438 5.438 22 Si 0.930 3.070 23 H -0.200 1.200 24 H -0.195 1.195 25 H -0.174 1.174 26 H 0.067 0.933 27 H 0.093 0.907 28 H 0.066 0.934 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.097 0.903 33 H 0.093 0.907 34 H 0.064 0.936 35 H 0.073 0.927 36 H 0.085 0.915 37 H 0.064 0.936 38 H 0.118 0.882 39 H 0.078 0.922 40 H 0.245 0.755 41 H 0.129 0.871 42 H 0.133 0.867 43 H 0.132 0.868 44 H 0.112 0.888 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.323 3.355 -14.260 15.274 hybrid contribution -0.013 -1.529 -0.396 1.579 sum -4.336 1.826 -14.656 15.393 Atomic orbital electron populations 1.21856 0.95201 1.01371 1.02210 1.21733 0.96516 0.96591 1.02100 1.20914 0.99526 0.94830 0.92554 1.21695 1.01305 0.99578 0.92997 1.21778 1.00796 1.01123 0.97112 1.21425 1.02313 0.96252 0.91810 0.86755 1.21868 1.01196 0.93195 1.03854 1.21527 0.80493 0.84758 0.84386 1.90551 1.40777 1.27961 1.85331 1.42970 1.45128 1.35508 1.04546 1.17831 1.07635 0.91204 0.92273 1.20890 0.99452 0.93034 0.97711 1.20590 1.10755 0.99232 0.95599 1.20639 0.99415 0.94113 0.97545 1.20777 1.08019 0.95133 1.00885 1.17819 0.90812 0.93674 0.91777 1.20506 1.46827 0.93125 0.96638 0.90115 1.28313 0.90461 1.11206 0.90905 1.70568 1.26555 1.13318 1.33380 0.83047 0.78311 0.68007 0.77595 1.20044 1.19531 1.17448 0.93289 0.90683 0.93361 0.91871 0.92737 0.92999 0.90335 0.90688 0.93571 0.92722 0.91502 0.93564 0.88165 0.92168 0.75511 0.87113 0.86736 0.86798 0.88791 0.90296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.15 9.13 71.98 0.66 -2.49 16 2 C -0.13 -3.41 5.07 30.59 0.16 -3.25 16 3 C -0.06 -1.43 1.40 -10.79 -0.02 -1.44 16 4 C -0.12 -2.00 4.84 30.59 0.15 -1.86 16 5 C -0.15 -2.38 9.52 71.98 0.69 -1.70 16 6 C -0.10 -2.51 2.07 -11.54 -0.02 -2.54 16 7 H 0.11 2.52 6.45 -2.39 -0.02 2.50 16 8 C -0.14 -3.26 8.75 71.98 0.63 -2.63 16 9 C 0.50 18.56 6.68 87.65 0.59 19.14 16 10 O -0.57 -24.82 11.04 -3.04 -0.03 -24.85 16 11 N -0.64 -26.05 4.77 -302.27 -1.44 -27.49 16 12 C 0.01 0.25 6.35 38.88 0.25 0.50 16 13 C -0.09 -4.42 8.70 22.36 0.19 -4.23 16 14 C -0.24 -11.31 10.04 22.42 0.22 -11.08 16 15 C -0.10 -4.67 9.97 22.00 0.22 -4.45 16 16 C -0.23 -11.89 7.89 22.46 0.18 -11.72 16 17 C 0.06 3.32 5.32 -21.18 -0.11 3.20 16 18 C -0.54 -27.26 8.34 23.38 0.20 -27.06 16 19 H 0.08 3.82 7.38 -2.92 -0.02 3.80 16 20 C 0.01 0.40 4.94 85.26 0.42 0.82 16 21 N -0.82 -42.47 12.31 21.83 0.27 -42.20 16 22 Si 1.11 40.89 30.00 68.60 2.06 42.95 16 23 H -0.28 -10.15 7.11 99.48 0.71 -9.44 16 24 H -0.27 -9.67 7.11 99.48 0.71 -8.96 16 25 H -0.25 -8.14 7.11 99.48 0.71 -7.43 16 26 H 0.05 1.06 6.32 -2.39 -0.02 1.04 16 27 H 0.07 1.24 6.56 -2.39 -0.02 1.23 16 28 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 29 H 0.06 1.51 6.90 -2.39 -0.02 1.49 16 30 H 0.05 1.85 5.42 -2.39 -0.01 1.84 16 31 H 0.05 1.48 8.10 -2.39 -0.02 1.46 16 32 H 0.08 1.15 6.21 -2.38 -0.01 1.14 16 33 H 0.07 1.12 6.20 -2.39 -0.01 1.11 16 34 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.05 0.87 6.92 -2.39 -0.02 0.86 16 36 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 37 H 0.05 1.18 8.14 -2.38 -0.02 1.16 16 38 H 0.10 1.61 6.33 -2.38 -0.02 1.60 16 39 H 0.06 1.41 7.68 -2.39 -0.02 1.39 16 40 H 0.41 15.06 7.51 -92.71 -0.70 14.36 16 41 H 0.11 5.37 6.15 -2.91 -0.02 5.35 16 42 H 0.11 4.70 8.06 -2.91 -0.02 4.68 16 43 H 0.11 4.72 8.06 -2.91 -0.02 4.69 16 44 H 0.09 5.06 6.47 -2.91 -0.02 5.05 16 45 H 0.28 15.54 6.67 -92.71 -0.62 14.92 16 Total: -1.00 -61.65 344.39 5.69 -55.96 By element: Atomic # 1 Polarization: 45.97 SS G_CDS: 0.45 Total: 46.42 kcal Atomic # 6 Polarization: -55.17 SS G_CDS: 4.39 Total: -50.78 kcal Atomic # 7 Polarization: -68.52 SS G_CDS: -1.17 Total: -69.70 kcal Atomic # 8 Polarization: -24.82 SS G_CDS: -0.03 Total: -24.85 kcal Atomic # 14 Polarization: 40.89 SS G_CDS: 2.06 Total: 42.95 kcal Total: -61.65 5.69 -55.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000554752269.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.454 kcal (2) G-P(sol) polarization free energy of solvation -61.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds