Wall clock time and date at job start Tue Mar 31 2020 06:51:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50703 * 119.99413 * 2 1 4 4 C 1.53005 * 109.46876 * 125.00141 * 3 2 1 5 5 C 1.52994 * 109.47217 * 180.02562 * 4 3 2 6 6 C 1.53001 * 109.47372 * 180.02562 * 5 4 3 7 7 N 1.46498 * 109.47584 * 179.97438 * 6 5 4 8 8 C 1.39664 * 120.00039 * 179.97438 * 7 6 5 9 9 C 1.38973 * 120.04703 * 359.97438 * 8 7 6 10 10 C 1.38116 * 120.03003 * 180.02562 * 9 8 7 11 11 C 1.38216 * 120.13578 * 359.74695 * 10 9 8 12 12 C 1.38779 * 120.08401 * 0.51068 * 11 10 9 13 13 O 1.35897 * 120.00949 * 179.76812 * 12 11 10 14 14 C 1.42898 * 117.00481 * 359.71829 * 13 12 11 15 15 C 1.52997 * 109.47319 * 180.02562 * 14 13 12 16 16 C 1.50697 * 109.47466 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99890 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00428 * 179.97438 * 16 15 14 19 19 N 1.31519 * 119.99563 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00432 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.46616 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47104 * 119.99966 * 20 18 16 23 23 H 1.48489 * 109.47200 * 240.00246 * 20 18 16 24 24 C 1.38609 * 119.96517 * 359.48769 * 12 11 10 25 25 H 1.07998 * 120.00385 * 359.97438 * 1 2 3 26 26 H 1.08003 * 119.99073 * 179.97438 * 1 2 3 27 27 H 1.07998 * 120.00385 * 180.02562 * 2 1 3 28 28 H 1.09000 * 109.47074 * 5.00869 * 3 2 1 29 29 H 1.08998 * 109.47670 * 245.00071 * 3 2 1 30 30 H 1.09006 * 109.47096 * 59.99922 * 4 3 2 31 31 H 1.08997 * 109.47335 * 300.00062 * 4 3 2 32 32 H 1.08997 * 109.47173 * 60.00115 * 5 4 3 33 33 H 1.09008 * 109.47399 * 300.00011 * 5 4 3 34 34 H 1.09006 * 109.47286 * 59.99638 * 6 5 4 35 35 H 1.09008 * 109.46600 * 300.00173 * 6 5 4 36 36 H 0.97000 * 119.99514 * 359.97438 * 7 6 5 37 37 H 1.07996 * 119.98339 * 0.02562 * 9 8 7 38 38 H 1.08007 * 119.92769 * 179.97438 * 10 9 8 39 39 H 1.07991 * 119.95689 * 180.26971 * 11 10 9 40 40 H 1.09002 * 109.47259 * 300.00417 * 14 13 12 41 41 H 1.09001 * 109.47074 * 60.00439 * 14 13 12 42 42 H 1.09002 * 109.47153 * 300.00307 * 15 14 13 43 43 H 1.08998 * 109.47533 * 59.99936 * 15 14 13 44 44 H 0.97002 * 119.99731 * 180.02562 * 19 18 16 45 45 H 1.08006 * 120.06150 * 180.23058 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 3.0350 1.3332 1.1817 5 6 3.7994 2.6585 1.1821 6 6 4.7714 2.6863 2.3634 7 7 5.5038 3.9550 2.3635 8 6 6.4538 4.2129 3.3543 9 6 6.7046 3.2668 4.3409 10 6 7.6437 3.5224 5.3209 11 6 8.3399 4.7164 5.3203 12 6 8.0898 5.6671 4.3407 13 8 8.7718 6.8425 4.3443 14 6 9.7271 7.0351 5.3894 15 6 10.3886 8.4054 5.2295 16 6 11.3965 8.6083 6.3313 17 1 11.5502 7.8369 7.0714 18 6 12.1233 9.7783 6.3940 19 7 11.9365 10.7175 5.4925 20 14 13.3721 10.0302 7.7602 21 1 13.3917 8.8337 8.6396 22 1 14.7192 10.2312 7.1686 23 1 12.9985 11.2254 8.5581 24 6 7.1482 5.4146 3.3553 25 1 -0.5401 0.9353 0.0004 26 1 -0.5399 -0.9354 -0.0004 27 1 1.8501 -0.9353 -0.0004 28 1 1.3584 2.1317 0.0897 29 1 2.6212 1.4029 -0.9313 30 1 3.7400 0.5067 1.0921 31 1 2.4772 1.2356 2.1130 32 1 3.0942 3.4847 1.2720 33 1 4.3572 2.7566 0.2507 34 1 5.4767 1.8600 2.2731 35 1 4.2139 2.5880 3.2949 36 1 5.3290 4.6160 1.6754 37 1 6.1650 2.3313 4.3413 38 1 7.8371 2.7861 6.0871 39 1 9.0767 4.9114 6.0854 40 1 9.2240 6.9854 6.3552 41 1 10.4872 6.2558 5.3351 42 1 10.8916 8.4555 4.2638 43 1 9.6284 9.1846 5.2840 44 1 12.4481 11.5405 5.5364 45 1 6.9549 6.1518 2.5900 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000556414296.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:04 Heat of formation + Delta-G solvation = -22.998033 kcal Electronic energy + Delta-G solvation = -20970.620056 eV Core-core repulsion = 17759.611399 eV Total energy + Delta-G solvation = -3211.008657 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.72983 -38.01623 -36.87952 -35.22356 -33.34208 -32.85389 -30.82436 -29.80636 -28.82698 -27.36001 -25.02683 -23.89245 -22.65209 -21.71474 -21.19299 -20.28231 -20.15608 -17.91611 -16.43966 -16.32416 -16.16567 -15.58293 -15.39019 -15.26422 -15.19997 -14.67720 -14.32752 -14.27253 -13.71412 -13.35230 -13.09274 -12.75794 -12.59615 -12.37802 -12.28674 -12.01204 -11.66792 -11.50172 -11.42901 -11.21205 -11.13399 -11.04489 -10.88387 -10.70020 -10.41136 -9.96490 -9.78146 -9.68807 -9.61106 -9.24813 -8.42724 -7.91060 -7.30189 -6.07769 -4.12001 1.74866 1.82767 1.90766 3.25003 3.28478 3.35691 3.39668 4.03522 4.15609 4.29955 4.44857 4.47161 4.51392 4.70655 4.93632 4.98267 5.10146 5.12419 5.28370 5.28781 5.31590 5.39195 5.41613 5.49417 5.57191 5.58584 5.65896 5.80175 5.81438 5.84728 6.11417 6.12716 6.15765 6.17769 6.31437 6.44160 6.65779 6.70358 6.78703 6.92503 7.41279 7.55501 7.68401 7.70037 7.86781 8.15104 8.28039 8.93959 9.52199 11.03903 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.057617 B = 0.001834 C = 0.001787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 485.851274 B =15263.492706 C =15667.373666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.154 4.154 3 C -0.096 4.096 4 C -0.111 4.111 5 C -0.132 4.132 6 C 0.128 3.872 7 N -0.751 5.751 8 C 0.246 3.754 9 C -0.244 4.244 10 C -0.037 4.037 11 C -0.264 4.264 12 C 0.187 3.813 13 O -0.316 6.316 14 C 0.066 3.934 15 C 0.024 3.976 16 C -0.525 4.525 17 H 0.059 0.941 18 C 0.060 3.940 19 N -0.890 5.890 20 Si 0.898 3.102 21 H -0.272 1.272 22 H -0.283 1.283 23 H -0.283 1.283 24 C -0.239 4.239 25 H 0.096 0.904 26 H 0.096 0.904 27 H 0.108 0.892 28 H 0.067 0.933 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.398 0.602 37 H 0.115 0.885 38 H 0.118 0.882 39 H 0.126 0.874 40 H 0.051 0.949 41 H 0.051 0.949 42 H 0.027 0.973 43 H 0.027 0.973 44 H 0.262 0.738 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.636 -20.755 -9.262 30.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.172 4.172 3 C -0.133 4.133 4 C -0.150 4.150 5 C -0.170 4.170 6 C 0.003 3.997 7 N -0.382 5.382 8 C 0.143 3.857 9 C -0.267 4.267 10 C -0.056 4.056 11 C -0.285 4.285 12 C 0.139 3.861 13 O -0.229 6.229 14 C -0.008 4.008 15 C -0.013 4.013 16 C -0.563 4.563 17 H 0.077 0.923 18 C -0.142 4.142 19 N -0.528 5.528 20 Si 0.726 3.274 21 H -0.196 1.196 22 H -0.209 1.209 23 H -0.209 1.209 24 C -0.262 4.262 25 H 0.114 0.886 26 H 0.114 0.886 27 H 0.126 0.874 28 H 0.086 0.914 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.232 0.768 37 H 0.133 0.867 38 H 0.136 0.864 39 H 0.144 0.856 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.046 0.954 43 H 0.046 0.954 44 H 0.072 0.928 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -19.660 -20.587 -9.407 29.981 hybrid contribution 0.703 0.318 0.636 1.000 sum -18.957 -20.269 -8.770 29.106 Atomic orbital electron populations 1.23878 0.96030 1.01865 1.01574 1.22988 0.96056 0.98591 0.99547 1.20782 0.98223 0.95397 0.98874 1.21440 0.97830 0.97096 0.98586 1.21789 0.98208 0.98483 0.98495 1.21277 0.93731 0.86413 0.98249 1.44567 1.42908 1.19674 1.31001 1.17360 0.87849 0.92403 0.88089 1.20384 1.06424 1.00547 0.99334 1.20622 0.93226 0.95511 0.96246 1.21148 1.07516 0.96516 1.03309 1.18824 0.89663 0.85292 0.92303 1.86143 1.51853 1.32950 1.51962 1.23311 0.88350 1.01707 0.87409 1.19134 0.95246 0.88606 0.98303 1.21027 1.21247 1.02410 1.11634 0.92283 1.24991 0.97191 0.95800 0.96230 1.69994 1.41145 1.07095 1.34579 0.86434 0.80987 0.78210 0.81778 1.19622 1.20869 1.20864 1.19670 1.03933 0.98731 1.03861 0.88608 0.88581 0.87410 0.91440 0.90897 0.91472 0.91517 0.91253 0.91222 0.92414 0.92418 0.76753 0.86733 0.86371 0.85581 0.93096 0.93092 0.95431 0.95425 0.92811 0.85800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.05 14.32 29.01 0.42 -0.63 16 2 C -0.15 -0.84 9.52 -36.02 -0.34 -1.18 16 3 C -0.10 -0.49 5.66 -27.88 -0.16 -0.65 16 4 C -0.11 -0.58 5.20 -26.73 -0.14 -0.72 16 5 C -0.13 -0.77 5.33 -26.73 -0.14 -0.91 16 6 C 0.13 1.01 4.91 -4.04 -0.02 0.99 16 7 N -0.75 -7.78 5.73 -58.65 -0.34 -8.12 16 8 C 0.25 3.37 6.65 -83.81 -0.56 2.81 16 9 C -0.24 -3.24 9.31 -39.35 -0.37 -3.61 16 10 C -0.04 -0.52 10.03 -39.63 -0.40 -0.92 16 11 C -0.26 -4.41 9.04 -39.39 -0.36 -4.77 16 12 C 0.19 3.46 6.68 -39.24 -0.26 3.20 16 13 O -0.32 -6.79 10.13 -19.42 -0.20 -6.99 16 14 C 0.07 1.47 4.68 37.16 0.17 1.64 16 15 C 0.02 0.65 5.34 -27.89 -0.15 0.50 16 16 C -0.52 -14.85 9.11 -34.44 -0.31 -15.16 16 17 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 18 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 19 N -0.89 -26.72 13.29 55.43 0.74 -25.98 16 20 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 21 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 24 C -0.24 -3.85 9.83 -39.24 -0.39 -4.24 16 25 H 0.10 0.47 7.84 -52.49 -0.41 0.06 16 26 H 0.10 0.43 8.06 -52.48 -0.42 0.01 16 27 H 0.11 0.52 8.06 -52.49 -0.42 0.10 16 28 H 0.07 0.35 7.79 -51.93 -0.40 -0.06 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.40 8.14 -51.92 -0.42 -0.02 16 34 H 0.06 0.46 7.95 -51.93 -0.41 0.05 16 35 H 0.06 0.47 7.95 -51.92 -0.41 0.05 16 36 H 0.40 3.61 8.48 -40.82 -0.35 3.27 16 37 H 0.11 1.26 6.73 -52.49 -0.35 0.91 16 38 H 0.12 1.34 8.06 -52.48 -0.42 0.92 16 39 H 0.13 2.08 6.29 -52.49 -0.33 1.75 16 40 H 0.05 1.08 7.67 -51.93 -0.40 0.68 16 41 H 0.05 1.08 7.65 -51.93 -0.40 0.68 16 42 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 45 H 0.12 1.89 8.06 -52.48 -0.42 1.46 16 LS Contribution 374.70 15.07 5.65 5.65 Total: -1.00 -31.00 374.70 -9.93 -40.92 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -7.66 Total: 0.10 kcal Atomic # 6 Polarization: -18.93 SS G_CDS: -3.10 Total: -22.03 kcal Atomic # 7 Polarization: -34.50 SS G_CDS: 0.40 Total: -34.10 kcal Atomic # 8 Polarization: -6.79 SS G_CDS: -0.20 Total: -6.99 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.00 -9.93 -40.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000556414296.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.925 kcal (2) G-P(sol) polarization free energy of solvation -30.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds