Wall clock time and date at job start Tue Mar 31 2020 06:01:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.46819 * 2 1 4 4 C 1.53783 * 113.60920 * 184.99597 * 3 2 1 5 5 C 1.53784 * 87.08338 * 220.02037 * 4 3 2 6 6 N 1.46499 * 113.61491 * 139.98310 * 5 4 3 7 7 C 1.39671 * 119.99620 * 155.28253 * 6 5 4 8 8 C 1.38971 * 120.04687 * 359.44137 * 7 6 5 9 9 C 1.38113 * 120.03061 * 179.77036 * 8 7 6 10 10 C 1.38220 * 120.13228 * 0.51290 * 9 8 7 11 11 C 1.38779 * 120.08721 * 359.74282 * 10 9 8 12 12 O 1.35894 * 120.01167 * 179.97438 * 11 10 9 13 13 C 1.42902 * 117.00729 * 0.02562 * 12 11 10 14 14 C 1.52996 * 109.47270 * 179.97438 * 13 12 11 15 15 C 1.50703 * 109.46866 * 180.02562 * 14 13 12 16 16 H 1.07997 * 120.00058 * 359.97438 * 15 14 13 17 17 C 1.37876 * 119.99875 * 180.02562 * 15 14 13 18 18 N 1.31509 * 120.00047 * 0.02562 * 17 15 14 19 19 Si 1.86808 * 119.99969 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46786 * 60.00014 * 19 17 15 21 21 H 1.48495 * 109.47040 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.46962 * 300.00430 * 19 17 15 23 23 C 1.38607 * 119.96579 * 0.02562 * 11 10 9 24 24 C 1.53780 * 113.61324 * 87.50531 * 3 2 1 25 25 H 1.09000 * 109.46878 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47047 * 300.00022 * 1 2 3 27 27 H 1.09005 * 109.46601 * 59.99968 * 1 2 3 28 28 H 1.08994 * 109.47047 * 239.99977 * 2 1 3 29 29 H 1.08993 * 109.46929 * 119.99790 * 2 1 3 30 30 H 1.08993 * 112.91348 * 316.25132 * 3 2 1 31 31 H 1.09000 * 113.60825 * 105.47598 * 4 3 2 32 32 H 1.09001 * 113.62188 * 334.57015 * 4 3 2 33 33 H 1.09002 * 113.61454 * 270.80589 * 5 4 3 34 34 H 0.97001 * 119.99790 * 334.99822 * 6 5 4 35 35 H 1.07998 * 119.98578 * 0.03227 * 8 7 6 36 36 H 1.08001 * 119.93710 * 180.23232 * 9 8 7 37 37 H 1.07997 * 119.95680 * 179.76241 * 10 9 8 38 38 H 1.08998 * 109.47092 * 300.00176 * 13 12 11 39 39 H 1.09004 * 109.46581 * 59.99520 * 13 12 11 40 40 H 1.08992 * 109.47298 * 299.99925 * 14 13 12 41 41 H 1.08998 * 109.47145 * 60.00791 * 14 13 12 42 42 H 0.97007 * 119.99793 * 180.02562 * 18 17 15 43 43 H 1.07999 * 120.06459 * 180.02562 * 23 11 10 44 44 H 1.08998 * 113.61772 * 25.42745 * 24 3 2 45 45 H 1.09001 * 113.61751 * 254.52803 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5688 1.5554 -0.1227 5 6 3.4888 2.6935 0.9084 6 7 4.5724 2.6696 1.8940 7 6 4.9521 3.8466 2.5430 8 6 4.3105 5.0431 2.2461 9 6 4.6830 6.2059 2.8914 10 6 5.7012 6.1852 3.8259 11 6 6.3491 4.9943 4.1227 12 8 7.3503 4.9758 5.0413 13 6 7.6835 6.2185 5.6632 14 6 8.8234 6.0005 6.6601 15 6 9.1742 7.3110 7.3164 16 1 8.6381 8.2095 7.0488 17 6 10.1804 7.3630 8.2576 18 7 10.8342 6.2692 8.5823 19 14 10.6158 8.9876 9.0706 20 1 9.4272 9.5171 9.7862 21 1 11.7221 8.7760 10.0383 22 1 11.0436 9.9609 8.0338 23 6 5.9751 3.8241 3.4808 24 6 2.1875 2.0438 1.4077 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.4977 2.0843 -0.6942 31 1 3.9048 1.8810 -1.1072 32 1 4.1020 0.6759 0.2382 33 1 3.3439 3.6774 0.4624 34 1 5.0234 1.8356 2.0989 35 1 3.5173 5.0628 1.5133 36 1 4.1808 7.1342 2.6622 37 1 5.9928 7.0968 4.3261 38 1 7.9975 6.9329 4.9022 39 1 6.8111 6.6072 6.1885 40 1 8.5090 5.2863 7.4211 41 1 9.6959 5.6117 6.1351 42 1 11.5419 6.3058 9.2449 43 1 6.4779 2.8964 3.7107 44 1 2.3430 1.2978 2.1870 45 1 1.4084 2.7636 1.6589 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000560245087.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:35 Heat of formation + Delta-G solvation = -30.956998 kcal Electronic energy + Delta-G solvation = -21648.571671 eV Core-core repulsion = 18437.217888 eV Total energy + Delta-G solvation = -3211.353784 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.14756 -40.33406 -38.55293 -35.60809 -35.18755 -33.02007 -32.54708 -30.77132 -29.38594 -27.04217 -26.62707 -25.74943 -23.88437 -23.56681 -22.29896 -21.39957 -20.46420 -19.32889 -18.31474 -17.31326 -16.91078 -16.89600 -16.71104 -16.53108 -16.12669 -15.74280 -15.37073 -14.49649 -14.45314 -14.36477 -14.30982 -13.93008 -13.75106 -13.59791 -13.33099 -13.19658 -12.92859 -12.69146 -12.58826 -12.55053 -12.19424 -12.03964 -11.94457 -11.68401 -11.60470 -11.55171 -11.38745 -11.19535 -11.00160 -10.69745 -10.60968 -9.22116 -8.31163 -8.25995 -6.39914 0.57809 0.69731 1.41076 1.45481 1.53418 2.19006 2.41694 2.77253 2.95639 3.08081 3.62992 3.69580 3.85219 3.97223 4.00820 4.21546 4.26579 4.29065 4.35429 4.41650 4.42206 4.52907 4.60388 4.67520 4.75081 4.76097 4.84562 4.85467 4.97763 5.03038 5.09393 5.16837 5.23501 5.27004 5.32614 5.39166 5.42514 5.47297 5.52777 5.58249 5.67332 5.68116 5.79775 6.07714 6.46315 6.62666 6.74522 6.82853 7.30026 8.86935 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.047228 B = 0.002153 C = 0.002106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.722352 B =13004.955277 C =13294.469816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.112 4.112 3 C -0.101 4.101 4 C -0.139 4.139 5 C 0.123 3.877 6 N -0.728 5.728 7 C 0.253 3.747 8 C -0.238 4.238 9 C -0.032 4.032 10 C -0.283 4.283 11 C 0.152 3.848 12 O -0.343 6.343 13 C 0.086 3.914 14 C 0.028 3.972 15 C -0.547 4.547 16 H 0.071 0.929 17 C 0.001 3.999 18 N -0.931 5.931 19 Si 0.977 3.023 20 H -0.264 1.264 21 H -0.282 1.282 22 H -0.263 1.263 23 C -0.255 4.255 24 C -0.150 4.150 25 H 0.054 0.946 26 H 0.050 0.950 27 H 0.058 0.942 28 H 0.067 0.933 29 H 0.057 0.943 30 H 0.101 0.899 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.112 0.888 34 H 0.403 0.597 35 H 0.146 0.854 36 H 0.150 0.850 37 H 0.121 0.879 38 H 0.059 0.941 39 H 0.059 0.941 40 H -0.002 1.002 41 H -0.002 1.002 42 H 0.267 0.733 43 H 0.121 0.879 44 H 0.076 0.924 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.203 -8.915 -20.536 30.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.150 4.150 3 C -0.119 4.119 4 C -0.177 4.177 5 C 0.018 3.982 6 N -0.356 5.356 7 C 0.148 3.852 8 C -0.260 4.260 9 C -0.051 4.051 10 C -0.304 4.304 11 C 0.105 3.895 12 O -0.257 6.257 13 C 0.012 3.988 14 C -0.009 4.009 15 C -0.585 4.585 16 H 0.089 0.911 17 C -0.198 4.198 18 N -0.570 5.570 19 Si 0.801 3.199 20 H -0.188 1.188 21 H -0.207 1.207 22 H -0.188 1.188 23 C -0.279 4.279 24 C -0.189 4.189 25 H 0.073 0.927 26 H 0.069 0.931 27 H 0.077 0.923 28 H 0.086 0.914 29 H 0.076 0.924 30 H 0.119 0.881 31 H 0.097 0.903 32 H 0.104 0.896 33 H 0.130 0.870 34 H 0.239 0.761 35 H 0.164 0.836 36 H 0.168 0.832 37 H 0.139 0.861 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.016 0.984 41 H 0.016 0.984 42 H 0.076 0.924 43 H 0.139 0.861 44 H 0.095 0.905 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -21.087 -9.124 -20.496 30.790 hybrid contribution 0.891 0.292 1.006 1.375 sum -20.196 -8.831 -19.490 29.423 Atomic orbital electron populations 1.21756 0.95583 1.01692 1.01875 1.21462 0.96148 0.95405 1.01948 1.22377 0.95315 0.97232 0.97013 1.23397 0.96852 0.98158 0.99276 1.22651 0.86258 0.99976 0.89363 1.44766 1.39529 1.07115 1.44190 1.17489 0.90472 0.88009 0.89198 1.20787 1.06541 0.91170 1.07539 1.20971 0.93253 0.98833 0.91994 1.21223 1.04399 0.97068 1.07692 1.19163 0.87187 0.94864 0.88239 1.86052 1.50517 1.36307 1.52805 1.22841 0.98157 0.83070 0.94723 1.18973 0.92107 0.97097 0.92758 1.21373 1.19207 0.94614 1.23319 0.91101 1.26063 0.95600 1.00964 0.97136 1.70120 1.23652 1.30072 1.33149 0.85317 0.78080 0.78337 0.78203 1.18834 1.20714 1.18807 1.19793 1.05340 0.97147 1.05587 1.23605 0.97720 1.00278 0.97340 0.92693 0.93097 0.92291 0.91449 0.92421 0.88113 0.90259 0.89605 0.87037 0.76146 0.83624 0.83247 0.86064 0.92256 0.92286 0.98380 0.98361 0.92443 0.86114 0.90530 0.91273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.90 71.98 0.71 -0.63 16 2 C -0.11 -1.03 5.77 30.60 0.18 -0.86 16 3 C -0.10 -0.94 3.65 -10.27 -0.04 -0.98 16 4 C -0.14 -1.44 7.39 31.12 0.23 -1.21 16 5 C 0.12 1.67 4.05 45.52 0.18 1.85 16 6 N -0.73 -13.74 5.53 -316.51 -1.75 -15.49 16 7 C 0.25 6.51 6.65 38.20 0.25 6.76 16 8 C -0.24 -5.58 9.26 22.42 0.21 -5.37 16 9 C -0.03 -0.82 10.03 22.24 0.22 -0.60 16 10 C -0.28 -9.36 9.04 22.39 0.20 -9.15 16 11 C 0.15 5.75 6.68 22.49 0.15 5.90 16 12 O -0.34 -15.51 10.13 -92.35 -0.94 -16.44 16 13 C 0.09 3.99 4.68 71.98 0.34 4.33 16 14 C 0.03 1.57 5.34 29.85 0.16 1.73 16 15 C -0.55 -31.62 9.11 25.60 0.23 -31.39 16 16 H 0.07 3.81 7.74 -2.91 -0.02 3.79 16 17 C 0.00 0.05 5.46 84.66 0.46 0.51 16 18 N -0.93 -57.50 13.29 21.45 0.28 -57.22 16 19 Si 0.98 44.10 29.54 68.60 2.03 46.12 16 20 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 21 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 22 H -0.26 -11.31 7.11 99.48 0.71 -10.61 16 23 C -0.26 -8.31 9.83 22.49 0.22 -8.09 16 24 C -0.15 -1.86 7.43 31.12 0.23 -1.63 16 25 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 26 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 27 H 0.06 0.46 8.14 -2.38 -0.02 0.44 16 28 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.06 0.60 7.84 -2.39 -0.02 0.58 16 30 H 0.10 0.80 8.13 -2.39 -0.02 0.78 16 31 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.09 0.90 8.08 -2.39 -0.02 0.88 16 33 H 0.11 1.42 6.13 -2.39 -0.01 1.41 16 34 H 0.40 6.93 8.74 -92.71 -0.81 6.12 16 35 H 0.15 2.52 6.04 -2.91 -0.02 2.50 16 36 H 0.15 2.84 8.06 -2.91 -0.02 2.82 16 37 H 0.12 4.01 6.29 -2.91 -0.02 3.99 16 38 H 0.06 2.59 7.66 -2.39 -0.02 2.57 16 39 H 0.06 2.58 7.66 -2.39 -0.02 2.56 16 40 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 41 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 42 H 0.27 15.39 8.31 -92.70 -0.77 14.61 16 43 H 0.12 3.84 8.06 -2.91 -0.02 3.82 16 44 H 0.08 1.09 7.90 -2.39 -0.02 1.07 16 45 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -67.84 365.85 3.72 -64.11 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: 0.15 Total: 17.73 kcal Atomic # 6 Polarization: -42.76 SS G_CDS: 3.95 Total: -38.81 kcal Atomic # 7 Polarization: -71.24 SS G_CDS: -1.47 Total: -72.70 kcal Atomic # 8 Polarization: -15.51 SS G_CDS: -0.94 Total: -16.44 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.12 kcal Total: -67.84 3.72 -64.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000560245087.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.155 kcal (2) G-P(sol) polarization free energy of solvation -67.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds