Wall clock time and date at job start Tue Mar 31 2020 06:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46605 * 2 1 4 4 C 1.52995 * 109.47576 * 119.99930 * 2 1 3 5 5 C 1.52994 * 109.47131 * 65.00427 * 4 2 1 6 6 C 1.50697 * 109.47223 * 180.02562 * 5 4 2 7 7 C 1.38287 * 119.92694 * 270.27304 * 6 5 4 8 8 C 1.38118 * 120.06716 * 180.32020 * 7 6 5 9 9 C 1.38874 * 119.92887 * 359.42718 * 8 7 6 10 10 N 1.39923 * 120.06578 * 180.29339 * 9 8 7 11 11 C 1.34784 * 119.99354 * 144.91266 * 10 9 8 12 12 O 1.21283 * 119.99989 * 4.62666 * 11 10 9 13 13 C 1.50703 * 119.99893 * 184.62204 * 11 10 9 14 14 C 1.52999 * 109.47164 * 180.02562 * 13 11 10 15 15 C 1.50700 * 109.46729 * 180.02562 * 14 13 11 16 16 H 1.07994 * 120.00560 * 359.97438 * 15 14 13 17 17 C 1.37883 * 119.99401 * 180.02562 * 15 14 13 18 18 N 1.31511 * 119.99542 * 179.97438 * 17 15 14 19 19 Si 1.86795 * 120.00114 * 359.97438 * 17 15 14 20 20 H 1.48504 * 109.47132 * 90.00444 * 19 17 15 21 21 H 1.48506 * 109.47232 * 210.00329 * 19 17 15 22 22 H 1.48504 * 109.47247 * 329.99946 * 19 17 15 23 23 C 1.38872 * 119.85875 * 0.28010 * 9 8 7 24 24 C 1.38106 * 119.92759 * 359.97438 * 23 9 8 25 25 H 1.08999 * 109.47036 * 299.99388 * 1 2 3 26 26 H 1.08995 * 109.47110 * 60.00240 * 1 2 3 27 27 H 1.09010 * 109.46157 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47036 * 240.00612 * 2 1 3 29 29 H 1.08996 * 109.47372 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.47157 * 300.00196 * 3 2 1 31 31 H 1.09004 * 109.46885 * 60.00068 * 3 2 1 32 32 H 1.09003 * 109.47475 * 305.00333 * 4 2 1 33 33 H 1.09001 * 109.47364 * 185.00400 * 4 2 1 34 34 H 1.08996 * 109.47313 * 59.99885 * 5 4 2 35 35 H 1.09002 * 109.47121 * 299.99680 * 5 4 2 36 36 H 1.08000 * 119.96888 * 0.05194 * 7 6 5 37 37 H 1.08003 * 120.03200 * 179.69943 * 8 7 6 38 38 H 0.96992 * 120.00802 * 324.91917 * 10 9 8 39 39 H 1.09001 * 109.47127 * 300.00552 * 13 11 10 40 40 H 1.09001 * 109.47129 * 59.99993 * 13 11 10 41 41 H 1.09003 * 109.46494 * 299.99828 * 14 13 11 42 42 H 1.08993 * 109.47329 * 59.99996 * 14 13 11 43 43 H 0.97013 * 119.99744 * 179.97438 * 18 17 15 44 44 H 1.08003 * 120.02986 * 180.02562 * 23 9 8 45 45 H 1.08008 * 119.95999 * 180.02562 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6355 -2.1954 1.1879 6 6 2.1374 -2.9056 2.4186 7 6 3.3937 -3.4835 2.4175 8 6 3.8540 -4.1409 3.5417 9 6 3.0584 -4.2109 4.6778 10 7 3.5243 -4.8708 5.8203 11 6 3.1995 -4.4096 7.0444 12 8 2.4360 -3.4740 7.1570 13 6 3.7849 -5.0565 8.2731 14 6 3.2576 -4.3484 9.5227 15 6 3.8436 -4.9950 10.7513 16 1 4.5237 -5.8279 10.6511 17 6 3.5106 -4.5238 12.0036 18 7 4.0216 -5.0883 13.0759 19 14 2.3338 -3.0836 12.1771 20 1 0.9411 -3.5907 12.2702 21 1 2.6652 -2.3187 13.4061 22 1 2.4594 -2.1962 10.9930 23 6 1.7996 -3.6243 4.6776 24 6 1.3432 -2.9730 3.5486 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0278 -0.0005 28 1 1.8933 -0.5137 -0.8900 29 1 3.1299 1.4427 -0.0005 30 1 1.6765 1.9564 -0.8900 31 1 1.6765 1.9563 0.8900 32 1 1.6055 -0.2617 2.1370 33 1 3.1264 -0.6442 1.2951 34 1 2.0701 -2.6549 0.3002 35 1 0.5492 -2.2724 1.1421 36 1 4.0140 -3.4245 1.5354 37 1 4.8334 -4.5962 3.5386 38 1 4.0810 -5.6601 5.7314 39 1 3.4970 -6.1074 8.3027 40 1 4.8717 -4.9784 8.2421 41 1 3.5454 -3.2975 9.4933 42 1 2.1710 -4.4269 9.5535 43 1 3.7876 -4.7566 13.9569 44 1 1.1788 -3.6767 5.5598 45 1 0.3644 -2.5162 3.5480 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000572214291.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:40 Heat of formation + Delta-G solvation = -48.225900 kcal Electronic energy + Delta-G solvation = -21807.458067 eV Core-core repulsion = 18595.355448 eV Total energy + Delta-G solvation = -3212.102620 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.36737 -38.76278 -37.04317 -34.78589 -33.56423 -32.07549 -31.22656 -30.90383 -28.24492 -27.47983 -26.11804 -23.98955 -22.95382 -21.78005 -20.69006 -20.22353 -19.75016 -17.65860 -17.17319 -16.17839 -15.79641 -15.69210 -15.28832 -14.68409 -14.37031 -14.21896 -14.12171 -13.89549 -13.50303 -13.25507 -13.07198 -12.97172 -12.61086 -12.59907 -12.42653 -12.01284 -11.87269 -11.56138 -11.47103 -11.25123 -11.03346 -10.97904 -10.79495 -10.72601 -10.23119 -10.08365 -10.04114 -9.80820 -9.32154 -9.22274 -8.88828 -8.53786 -7.94547 -6.05774 -4.04980 1.27963 1.42739 2.93930 3.29080 3.35920 3.42792 3.53166 3.79878 4.44695 4.48325 4.56527 4.62984 4.78366 4.90181 5.00796 5.06647 5.23255 5.25346 5.29544 5.33235 5.39470 5.41066 5.44913 5.48968 5.57245 5.65120 5.70311 5.78471 5.82155 5.90707 5.97245 6.00381 6.03587 6.07157 6.12084 6.32190 6.40894 6.58382 6.62689 6.64120 7.10501 7.30506 7.37638 7.58797 7.74758 8.41724 8.51232 8.96725 9.56890 11.06906 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.024386 B = 0.002609 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.941988 B =10728.813441 C =11464.992811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.098 4.098 3 C -0.149 4.149 4 C -0.110 4.110 5 C -0.077 4.077 6 C -0.106 4.106 7 C -0.101 4.101 8 C -0.149 4.149 9 C 0.150 3.850 10 N -0.685 5.685 11 C 0.509 3.491 12 O -0.520 6.520 13 C -0.121 4.121 14 C 0.001 3.999 15 C -0.526 4.526 16 H 0.073 0.927 17 C 0.069 3.931 18 N -0.902 5.902 19 Si 0.878 3.122 20 H -0.276 1.276 21 H -0.288 1.288 22 H -0.261 1.261 23 C -0.120 4.120 24 C -0.099 4.099 25 H 0.055 0.945 26 H 0.051 0.949 27 H 0.057 0.943 28 H 0.068 0.932 29 H 0.054 0.946 30 H 0.052 0.948 31 H 0.054 0.946 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.071 0.929 36 H 0.121 0.879 37 H 0.123 0.877 38 H 0.410 0.590 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.024 0.976 42 H 0.020 0.980 43 H 0.264 0.736 44 H 0.140 0.860 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.380 5.508 -28.691 29.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.116 4.116 3 C -0.206 4.206 4 C -0.148 4.148 5 C -0.114 4.114 6 C -0.107 4.107 7 C -0.119 4.119 8 C -0.169 4.169 9 C 0.055 3.945 10 N -0.331 5.331 11 C 0.299 3.701 12 O -0.394 6.394 13 C -0.161 4.161 14 C -0.037 4.037 15 C -0.564 4.564 16 H 0.091 0.909 17 C -0.132 4.132 18 N -0.541 5.541 19 Si 0.705 3.295 20 H -0.202 1.202 21 H -0.214 1.214 22 H -0.185 1.185 23 C -0.141 4.141 24 C -0.118 4.118 25 H 0.074 0.926 26 H 0.070 0.930 27 H 0.076 0.924 28 H 0.087 0.913 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.090 0.910 36 H 0.139 0.861 37 H 0.141 0.859 38 H 0.245 0.755 39 H 0.108 0.892 40 H 0.108 0.892 41 H 0.043 0.957 42 H 0.038 0.962 43 H 0.073 0.927 44 H 0.157 0.843 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -3.904 6.190 -28.308 29.239 hybrid contribution -0.193 0.269 0.252 0.416 sum -4.097 6.459 -28.056 29.080 Atomic orbital electron populations 1.21909 0.95327 1.01878 1.01648 1.21142 0.95916 0.96160 0.98397 1.21848 1.00966 0.96075 1.01696 1.21661 1.01078 0.94263 0.97784 1.20601 1.01081 0.94696 0.94997 1.19811 0.94969 1.00112 0.95827 1.20742 0.95493 0.97984 0.97714 1.20890 0.99328 1.03186 0.93529 1.17873 0.92829 0.96789 0.86975 1.43866 1.53474 1.31097 1.04634 1.21801 0.80576 0.83250 0.84427 1.90649 1.34217 1.28216 1.86335 1.21709 1.01580 1.01113 0.91682 1.19383 0.96661 0.96309 0.91306 1.21086 1.28545 1.17621 0.89169 0.90878 1.24975 0.95825 0.96651 0.95795 1.69913 1.44462 1.41723 0.97989 0.86794 0.81525 0.83367 0.77851 1.20214 1.21402 1.18541 1.21363 0.94595 0.99039 0.99064 1.20921 0.99672 0.98951 0.92234 0.92634 0.92982 0.92386 0.91340 0.92731 0.92864 0.92640 0.91696 0.91844 0.91352 0.91001 0.86125 0.85893 0.75490 0.89234 0.89191 0.95742 0.96182 0.92675 0.84257 0.86114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 8.95 37.16 0.33 -0.63 16 2 C -0.10 -0.66 2.92 -90.62 -0.26 -0.92 16 3 C -0.15 -0.97 9.19 37.16 0.34 -0.63 16 4 C -0.11 -0.88 4.66 -26.74 -0.12 -1.00 16 5 C -0.08 -0.62 5.09 -27.89 -0.14 -0.76 16 6 C -0.11 -1.14 5.14 -104.59 -0.54 -1.67 16 7 C -0.10 -1.05 9.69 -39.61 -0.38 -1.44 16 8 C -0.15 -1.71 9.97 -39.39 -0.39 -2.10 16 9 C 0.15 2.10 6.30 -83.69 -0.53 1.57 16 10 N -0.68 -9.48 5.34 -9.86 -0.05 -9.53 16 11 C 0.51 9.13 7.67 -10.98 -0.08 9.05 16 12 O -0.52 -11.20 13.42 5.55 0.07 -11.12 16 13 C -0.12 -2.27 5.64 -27.88 -0.16 -2.43 16 14 C 0.00 0.03 3.33 -27.88 -0.09 -0.06 16 15 C -0.53 -14.92 9.66 -34.44 -0.33 -15.25 16 16 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 17 C 0.07 2.03 5.47 -17.82 -0.10 1.94 16 18 N -0.90 -27.84 13.96 55.43 0.77 -27.06 16 19 Si 0.88 22.48 27.47 -169.99 -4.67 17.81 16 20 H -0.28 -6.97 7.11 56.52 0.40 -6.56 16 21 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 22 H -0.26 -6.66 6.54 56.52 0.37 -6.29 16 23 C -0.12 -1.79 8.70 -39.40 -0.34 -2.13 16 24 C -0.10 -1.22 9.69 -39.61 -0.38 -1.61 16 25 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 26 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.06 0.36 6.57 -51.92 -0.34 0.02 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 35 H 0.07 0.55 6.51 -51.93 -0.34 0.21 16 36 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 37 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 38 H 0.41 4.21 8.82 -40.82 -0.36 3.85 16 39 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 40 H 0.09 1.56 8.14 -51.93 -0.42 1.13 16 41 H 0.02 0.63 7.16 -51.93 -0.37 0.26 16 42 H 0.02 0.50 7.53 -51.93 -0.39 0.11 16 43 H 0.26 7.63 8.31 -40.81 -0.34 7.29 16 44 H 0.14 2.35 6.22 -52.48 -0.33 2.03 16 45 H 0.12 1.30 8.06 -52.48 -0.42 0.87 16 LS Contribution 365.80 15.07 5.51 5.51 Total: -1.00 -33.15 365.80 -9.18 -42.33 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -7.63 Total: 0.14 kcal Atomic # 6 Polarization: -14.89 SS G_CDS: -3.19 Total: -18.08 kcal Atomic # 7 Polarization: -37.32 SS G_CDS: 0.72 Total: -36.59 kcal Atomic # 8 Polarization: -11.20 SS G_CDS: 0.07 Total: -11.12 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -4.67 Total: 17.81 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.15 -9.18 -42.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572214291.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.894 kcal (2) G-P(sol) polarization free energy of solvation -33.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds