Wall clock time and date at job start Tue Mar 31 2020 06:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46605 * 2 1 4 4 C 1.52995 * 109.47576 * 119.99930 * 2 1 3 5 5 C 1.52994 * 109.47131 * 65.00427 * 4 2 1 6 6 C 1.50697 * 109.47223 * 180.02562 * 5 4 2 7 7 C 1.38287 * 119.92694 * 270.27304 * 6 5 4 8 8 C 1.38118 * 120.06716 * 180.32020 * 7 6 5 9 9 C 1.38874 * 119.92887 * 359.42718 * 8 7 6 10 10 N 1.39923 * 120.06578 * 180.29339 * 9 8 7 11 11 C 1.34784 * 119.99354 * 144.91266 * 10 9 8 12 12 O 1.21283 * 119.99989 * 4.62666 * 11 10 9 13 13 C 1.50703 * 119.99893 * 184.62204 * 11 10 9 14 14 C 1.52999 * 109.47164 * 180.02562 * 13 11 10 15 15 C 1.50700 * 109.46729 * 180.02562 * 14 13 11 16 16 H 1.07994 * 120.00560 * 359.97438 * 15 14 13 17 17 C 1.37883 * 119.99401 * 180.02562 * 15 14 13 18 18 N 1.31511 * 119.99542 * 179.97438 * 17 15 14 19 19 Si 1.86795 * 120.00114 * 359.97438 * 17 15 14 20 20 H 1.48504 * 109.47132 * 90.00444 * 19 17 15 21 21 H 1.48506 * 109.47232 * 210.00329 * 19 17 15 22 22 H 1.48504 * 109.47247 * 329.99946 * 19 17 15 23 23 C 1.38872 * 119.85875 * 0.28010 * 9 8 7 24 24 C 1.38106 * 119.92759 * 359.97438 * 23 9 8 25 25 H 1.08999 * 109.47036 * 299.99388 * 1 2 3 26 26 H 1.08995 * 109.47110 * 60.00240 * 1 2 3 27 27 H 1.09010 * 109.46157 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47036 * 240.00612 * 2 1 3 29 29 H 1.08996 * 109.47372 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.47157 * 300.00196 * 3 2 1 31 31 H 1.09004 * 109.46885 * 60.00068 * 3 2 1 32 32 H 1.09003 * 109.47475 * 305.00333 * 4 2 1 33 33 H 1.09001 * 109.47364 * 185.00400 * 4 2 1 34 34 H 1.08996 * 109.47313 * 59.99885 * 5 4 2 35 35 H 1.09002 * 109.47121 * 299.99680 * 5 4 2 36 36 H 1.08000 * 119.96888 * 0.05194 * 7 6 5 37 37 H 1.08003 * 120.03200 * 179.69943 * 8 7 6 38 38 H 0.96992 * 120.00802 * 324.91917 * 10 9 8 39 39 H 1.09001 * 109.47127 * 300.00552 * 13 11 10 40 40 H 1.09001 * 109.47129 * 59.99993 * 13 11 10 41 41 H 1.09003 * 109.46494 * 299.99828 * 14 13 11 42 42 H 1.08993 * 109.47329 * 59.99996 * 14 13 11 43 43 H 0.97013 * 119.99744 * 179.97438 * 18 17 15 44 44 H 1.08003 * 120.02986 * 180.02562 * 23 9 8 45 45 H 1.08008 * 119.95999 * 180.02562 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6355 -2.1954 1.1879 6 6 2.1374 -2.9056 2.4186 7 6 3.3937 -3.4835 2.4175 8 6 3.8540 -4.1409 3.5417 9 6 3.0584 -4.2109 4.6778 10 7 3.5243 -4.8708 5.8203 11 6 3.1995 -4.4096 7.0444 12 8 2.4360 -3.4740 7.1570 13 6 3.7849 -5.0565 8.2731 14 6 3.2576 -4.3484 9.5227 15 6 3.8436 -4.9950 10.7513 16 1 4.5237 -5.8279 10.6511 17 6 3.5106 -4.5238 12.0036 18 7 4.0216 -5.0883 13.0759 19 14 2.3338 -3.0836 12.1771 20 1 0.9411 -3.5907 12.2702 21 1 2.6652 -2.3187 13.4061 22 1 2.4594 -2.1962 10.9930 23 6 1.7996 -3.6243 4.6776 24 6 1.3432 -2.9730 3.5486 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0278 -0.0005 28 1 1.8933 -0.5137 -0.8900 29 1 3.1299 1.4427 -0.0005 30 1 1.6765 1.9564 -0.8900 31 1 1.6765 1.9563 0.8900 32 1 1.6055 -0.2617 2.1370 33 1 3.1264 -0.6442 1.2951 34 1 2.0701 -2.6549 0.3002 35 1 0.5492 -2.2724 1.1421 36 1 4.0140 -3.4245 1.5354 37 1 4.8334 -4.5962 3.5386 38 1 4.0810 -5.6601 5.7314 39 1 3.4970 -6.1074 8.3027 40 1 4.8717 -4.9784 8.2421 41 1 3.5454 -3.2975 9.4933 42 1 2.1710 -4.4269 9.5535 43 1 3.7876 -4.7566 13.9569 44 1 1.1788 -3.6767 5.5598 45 1 0.3644 -2.5162 3.5480 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000572214291.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:40 Heat of formation + Delta-G solvation = -66.685974 kcal Electronic energy + Delta-G solvation = -21808.258556 eV Core-core repulsion = 18595.355448 eV Total energy + Delta-G solvation = -3212.903108 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.55096 -39.83091 -37.74316 -35.92260 -35.55743 -33.51013 -32.62244 -31.85053 -29.31128 -27.99550 -27.73947 -24.94792 -23.92184 -23.26706 -21.83333 -21.16977 -20.77245 -19.28098 -18.58739 -17.74141 -16.84965 -16.59093 -16.27847 -16.18126 -15.61976 -15.42147 -15.02240 -14.82283 -14.66156 -14.55743 -14.43955 -14.13113 -13.75412 -13.58097 -13.44670 -13.06654 -12.93045 -12.73837 -12.55210 -12.23876 -12.15090 -12.01337 -11.98330 -11.79779 -11.65052 -11.43189 -11.40491 -11.33259 -11.07266 -10.79574 -10.73348 -9.84371 -8.95907 -8.33108 -6.36000 0.30326 0.48813 1.31610 1.33863 1.48475 1.59540 2.10974 2.33214 2.85238 3.02557 3.79493 3.82122 3.95717 4.07264 4.08539 4.11952 4.27943 4.33038 4.40245 4.45114 4.50797 4.63295 4.66479 4.73957 4.83271 4.86495 4.88839 4.96125 5.00782 5.08925 5.12828 5.19641 5.25513 5.30672 5.36590 5.38641 5.40921 5.44061 5.51289 5.55878 5.57703 5.61113 5.76465 6.12934 6.21311 6.46153 6.70482 7.17276 7.29322 8.82386 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.024386 B = 0.002609 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.941988 B =10728.813441 C =11464.992811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.094 4.094 3 C -0.150 4.150 4 C -0.107 4.107 5 C -0.073 4.073 6 C -0.100 4.100 7 C -0.099 4.099 8 C -0.141 4.141 9 C 0.122 3.878 10 N -0.664 5.664 11 C 0.514 3.486 12 O -0.564 6.564 13 C -0.114 4.114 14 C 0.005 3.995 15 C -0.529 4.529 16 H 0.052 0.948 17 C 0.013 3.987 18 N -0.942 5.942 19 Si 0.938 3.062 20 H -0.269 1.269 21 H -0.278 1.278 22 H -0.263 1.263 23 C -0.146 4.146 24 C -0.110 4.110 25 H 0.046 0.954 26 H 0.058 0.942 27 H 0.061 0.939 28 H 0.079 0.921 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.046 0.954 32 H 0.048 0.952 33 H 0.061 0.939 34 H 0.088 0.912 35 H 0.077 0.923 36 H 0.153 0.847 37 H 0.150 0.850 38 H 0.427 0.573 39 H 0.109 0.891 40 H 0.108 0.892 41 H 0.009 0.991 42 H 0.010 0.990 43 H 0.267 0.733 44 H 0.109 0.891 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.003 5.841 -31.753 32.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.113 4.113 3 C -0.207 4.207 4 C -0.145 4.145 5 C -0.110 4.110 6 C -0.100 4.100 7 C -0.118 4.118 8 C -0.161 4.161 9 C 0.028 3.972 10 N -0.311 5.311 11 C 0.303 3.697 12 O -0.441 6.441 13 C -0.153 4.153 14 C -0.033 4.033 15 C -0.567 4.567 16 H 0.071 0.929 17 C -0.184 4.184 18 N -0.583 5.583 19 Si 0.762 3.238 20 H -0.194 1.194 21 H -0.204 1.204 22 H -0.187 1.187 23 C -0.166 4.166 24 C -0.128 4.128 25 H 0.065 0.935 26 H 0.077 0.923 27 H 0.080 0.920 28 H 0.097 0.903 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.080 0.920 34 H 0.106 0.894 35 H 0.095 0.905 36 H 0.171 0.829 37 H 0.168 0.832 38 H 0.266 0.734 39 H 0.127 0.873 40 H 0.126 0.874 41 H 0.028 0.972 42 H 0.028 0.972 43 H 0.076 0.924 44 H 0.127 0.873 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -3.508 6.491 -31.413 32.268 hybrid contribution -0.277 0.135 1.090 1.133 sum -3.785 6.626 -30.323 31.268 Atomic orbital electron populations 1.21917 0.95202 1.02110 1.01603 1.21122 0.95989 0.96095 0.98064 1.21859 1.01055 0.96090 1.01698 1.21615 1.00860 0.94199 0.97793 1.20639 1.01561 0.94432 0.94340 1.20142 0.94843 0.99125 0.95937 1.21170 0.95517 0.96667 0.98396 1.21189 0.99922 1.02466 0.92529 1.18066 0.93261 0.98183 0.87683 1.43499 1.52783 1.31297 1.03497 1.21477 0.80114 0.82674 0.85391 1.90644 1.36226 1.30222 1.87049 1.21518 1.02475 1.01443 0.89887 1.19230 0.95879 0.95711 0.92525 1.21412 1.27717 1.16877 0.90679 0.92934 1.25798 0.97599 0.99311 0.95735 1.70022 1.46159 1.43469 0.98605 0.85840 0.79725 0.80306 0.77894 1.19373 1.20361 1.18694 1.21281 0.95327 1.01003 0.99022 1.21068 1.00510 0.98972 0.92288 0.93470 0.92287 0.92024 0.90253 0.92616 0.92090 0.93455 0.93342 0.91996 0.89386 0.90483 0.82902 0.83224 0.73361 0.87337 0.87405 0.97214 0.97209 0.92362 0.87318 0.85403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 8.95 71.98 0.64 -1.02 16 2 C -0.09 -1.06 2.92 -10.79 -0.03 -1.09 16 3 C -0.15 -1.71 9.19 71.98 0.66 -1.05 16 4 C -0.11 -1.48 4.66 30.59 0.14 -1.34 16 5 C -0.07 -0.97 5.09 29.85 0.15 -0.82 16 6 C -0.10 -1.91 5.14 -19.84 -0.10 -2.01 16 7 C -0.10 -1.73 9.69 22.25 0.22 -1.52 16 8 C -0.14 -2.83 9.97 22.39 0.22 -2.61 16 9 C 0.12 3.28 6.30 38.15 0.24 3.53 16 10 N -0.66 -17.61 5.34 -303.49 -1.62 -19.23 16 11 C 0.51 18.30 7.67 87.66 0.67 18.98 16 12 O -0.56 -24.86 13.42 -3.04 -0.04 -24.90 16 13 C -0.11 -4.20 5.64 29.85 0.17 -4.03 16 14 C 0.00 0.22 3.33 29.85 0.10 0.32 16 15 C -0.53 -30.36 9.66 25.60 0.25 -30.11 16 16 H 0.05 3.16 7.99 -2.91 -0.02 3.13 16 17 C 0.01 0.80 5.47 84.66 0.46 1.26 16 18 N -0.94 -58.93 13.96 21.45 0.30 -58.64 16 19 Si 0.94 46.92 27.47 68.60 1.88 48.81 16 20 H -0.27 -13.01 7.11 99.48 0.71 -12.30 16 21 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 22 H -0.26 -13.11 6.54 99.48 0.65 -12.45 16 23 C -0.15 -4.41 8.70 22.39 0.19 -4.21 16 24 C -0.11 -2.67 9.69 22.25 0.22 -2.45 16 25 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 26 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 27 H 0.06 0.63 6.57 -2.38 -0.02 0.61 16 28 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.05 0.61 8.14 -2.38 -0.02 0.59 16 32 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.09 0.88 8.09 -2.39 -0.02 0.86 16 35 H 0.08 0.98 6.51 -2.39 -0.02 0.97 16 36 H 0.15 1.71 8.06 -2.91 -0.02 1.69 16 37 H 0.15 2.16 8.06 -2.91 -0.02 2.13 16 38 H 0.43 7.87 8.82 -92.71 -0.82 7.05 16 39 H 0.11 3.58 8.14 -2.39 -0.02 3.56 16 40 H 0.11 3.59 8.14 -2.39 -0.02 3.57 16 41 H 0.01 0.50 7.16 -2.39 -0.02 0.48 16 42 H 0.01 0.49 7.53 -2.39 -0.02 0.47 16 43 H 0.27 15.64 8.31 -92.70 -0.77 14.87 16 44 H 0.11 3.92 6.22 -2.91 -0.02 3.90 16 45 H 0.13 2.76 8.06 -2.91 -0.02 2.74 16 Total: -1.00 -73.04 365.80 4.82 -68.23 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: 0.08 Total: 13.91 kcal Atomic # 6 Polarization: -32.38 SS G_CDS: 4.21 Total: -28.18 kcal Atomic # 7 Polarization: -76.54 SS G_CDS: -1.32 Total: -77.86 kcal Atomic # 8 Polarization: -24.86 SS G_CDS: -0.04 Total: -24.90 kcal Atomic # 14 Polarization: 46.92 SS G_CDS: 1.88 Total: 48.81 kcal Total: -73.04 4.82 -68.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572214291.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.541 kcal (2) G-P(sol) polarization free energy of solvation -73.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds