Wall clock time and date at job start Tue Mar 31 2020 06:40:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.46956 * 2 1 4 4 C 1.53004 * 109.47238 * 240.00215 * 2 1 3 5 5 C 1.50699 * 109.47254 * 120.00181 * 2 1 3 6 6 C 1.38385 * 119.92435 * 359.97438 * 5 2 1 7 7 C 1.38342 * 120.29104 * 180.02562 * 6 5 2 8 8 C 1.37979 * 120.14224 * 359.97438 * 7 6 5 9 9 C 1.39556 * 119.85586 * 0.02562 * 8 7 6 10 10 C 1.47847 * 120.14286 * 180.02562 * 9 8 7 11 11 O 1.21547 * 119.99443 * 179.97438 * 10 9 8 12 12 N 1.34776 * 119.99889 * 359.97142 * 10 9 8 13 13 C 1.46500 * 119.99682 * 180.02562 * 12 10 9 14 14 C 1.52994 * 109.47329 * 179.97438 * 13 12 10 15 15 C 1.52995 * 109.47602 * 179.97438 * 14 13 12 16 16 C 1.50699 * 109.47625 * 180.02562 * 15 14 13 17 17 H 1.08002 * 119.99867 * 359.97438 * 16 15 14 18 18 C 1.37877 * 120.00348 * 180.02562 * 16 15 14 19 19 N 1.31511 * 119.99926 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99918 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.46895 * 60.00370 * 20 18 16 22 22 H 1.48505 * 109.46689 * 179.97438 * 20 18 16 23 23 H 1.48490 * 109.47400 * 300.00072 * 20 18 16 24 24 C 1.37933 * 119.92803 * 180.02562 * 5 2 1 25 25 H 1.08999 * 109.47174 * 299.99771 * 1 2 3 26 26 H 1.09004 * 109.47216 * 59.99989 * 1 2 3 27 27 H 1.09003 * 109.46806 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47092 * 180.02562 * 3 2 1 29 29 H 1.08995 * 109.47755 * 300.00066 * 3 2 1 30 30 H 1.08999 * 109.46992 * 60.00117 * 3 2 1 31 31 H 1.09009 * 109.46884 * 299.99846 * 4 2 1 32 32 H 1.09004 * 109.47184 * 59.99776 * 4 2 1 33 33 H 1.08999 * 109.47162 * 180.02562 * 4 2 1 34 34 H 1.08001 * 119.85329 * 359.74701 * 6 5 2 35 35 H 1.07993 * 119.92336 * 180.02562 * 7 6 5 36 36 H 1.08000 * 120.06786 * 180.02562 * 8 7 6 37 37 H 0.96994 * 120.00442 * 0.02562 * 12 10 9 38 38 H 1.09009 * 109.46819 * 300.00070 * 13 12 10 39 39 H 1.09001 * 109.47363 * 59.99520 * 13 12 10 40 40 H 1.09001 * 109.47424 * 300.00132 * 14 13 12 41 41 H 1.09001 * 109.47242 * 59.99504 * 14 13 12 42 42 H 1.09001 * 109.47611 * 300.00435 * 15 14 13 43 43 H 1.09001 * 109.46930 * 59.99677 * 15 14 13 44 44 H 0.97002 * 119.99907 * 180.02562 * 19 18 16 45 45 H 1.08000 * 120.07460 * 359.95066 * 24 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0324 -0.7104 1.2304 6 6 1.1317 -1.2353 2.1406 7 6 1.5845 -1.8885 3.2729 8 6 2.9388 -2.0210 3.5014 9 6 3.8524 -1.4940 2.5875 10 6 5.3049 -1.6329 2.8257 11 8 6.0982 -1.1732 2.0278 12 7 5.7493 -2.2691 3.9277 13 6 7.1886 -2.4061 4.1640 14 6 7.4207 -3.1616 5.4740 15 6 8.9238 -3.3053 5.7205 16 6 9.1524 -4.0500 7.0106 17 1 8.3098 -4.3867 7.5964 18 6 10.4372 -4.3005 7.4437 19 7 11.4632 -3.8893 6.7312 20 14 10.7204 -5.2230 9.0432 21 1 10.1029 -6.5705 8.9534 22 1 12.1795 -5.3625 9.2823 23 1 10.1043 -4.4698 10.1648 24 6 3.3888 -0.8351 1.4475 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6766 1.9562 0.8900 31 1 1.6767 -1.7490 -1.2493 32 1 1.6767 -0.2074 -2.1393 33 1 3.1300 -0.7216 -1.2491 34 1 0.0707 -1.1307 1.9684 35 1 0.8765 -2.2962 3.9790 36 1 3.2910 -2.5316 4.3856 37 1 5.1162 -2.6361 4.5643 38 1 7.6409 -2.9587 3.3404 39 1 7.6418 -1.4170 4.2301 40 1 6.9683 -2.6087 6.2974 41 1 6.9674 -4.1507 5.4083 42 1 9.3758 -3.8584 4.8972 43 1 9.3774 -2.3164 5.7861 44 1 12.3671 -4.0659 7.0357 45 1 4.0906 -0.4250 0.7364 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000582733955.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:04 Heat of formation + Delta-G solvation = -46.174105 kcal Electronic energy + Delta-G solvation = -21959.080088 eV Core-core repulsion = 18747.066441 eV Total energy + Delta-G solvation = -3212.013647 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.47990 -39.01913 -36.44837 -35.44081 -33.35091 -31.72153 -31.07795 -30.08504 -27.87222 -27.53571 -26.70600 -24.04155 -23.30922 -22.31785 -20.86399 -20.44629 -19.09133 -17.66343 -16.44800 -16.31528 -15.69549 -15.31397 -15.22616 -14.91910 -14.59736 -14.45635 -14.10155 -13.91396 -13.79236 -13.56710 -12.92798 -12.54372 -12.31432 -12.29796 -12.03915 -11.99624 -11.94585 -11.83457 -11.70637 -11.27358 -11.06079 -10.88897 -10.80532 -10.72724 -10.63156 -9.94378 -9.87190 -9.39718 -9.16268 -9.13524 -8.98586 -8.74445 -8.37275 -6.01923 -4.05190 0.73353 1.14671 2.88305 3.31889 3.33970 3.36753 3.39394 3.75484 4.22506 4.41450 4.44083 4.65761 4.66161 4.75444 4.86696 4.99371 5.07149 5.18611 5.32187 5.33684 5.35168 5.44197 5.49949 5.56842 5.58591 5.63697 5.73804 5.76383 5.76985 5.85463 5.91564 5.99327 6.14897 6.15679 6.21659 6.34431 6.46205 6.58845 6.67624 6.82622 6.99195 7.62838 7.68947 7.75597 7.96568 8.34440 8.38830 9.01177 9.58891 11.09328 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.039045 B = 0.002359 C = 0.002262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.958137 B =11867.659338 C =12377.654238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.029 4.029 3 C -0.141 4.141 4 C -0.141 4.141 5 C -0.081 4.081 6 C -0.101 4.101 7 C -0.125 4.125 8 C -0.092 4.092 9 C -0.126 4.126 10 C 0.550 3.450 11 O -0.541 6.541 12 N -0.720 5.720 13 C 0.116 3.884 14 C -0.121 4.121 15 C 0.024 3.976 16 C -0.523 4.523 17 H 0.055 0.945 18 C 0.057 3.943 19 N -0.894 5.894 20 Si 0.894 3.106 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 C -0.057 4.057 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.129 0.871 35 H 0.127 0.873 36 H 0.127 0.873 37 H 0.397 0.603 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.054 0.946 41 H 0.054 0.946 42 H 0.019 0.981 43 H 0.019 0.981 44 H 0.262 0.738 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.106 7.198 -12.444 28.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.029 4.029 3 C -0.198 4.198 4 C -0.198 4.198 5 C -0.081 4.081 6 C -0.119 4.119 7 C -0.143 4.143 8 C -0.111 4.111 9 C -0.129 4.129 10 C 0.337 3.663 11 O -0.420 6.420 12 N -0.371 5.371 13 C -0.006 4.006 14 C -0.159 4.159 15 C -0.014 4.014 16 C -0.562 4.562 17 H 0.073 0.927 18 C -0.145 4.145 19 N -0.533 5.533 20 Si 0.722 3.278 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.202 1.202 24 C -0.076 4.076 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.147 0.853 35 H 0.145 0.855 36 H 0.145 0.855 37 H 0.232 0.768 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.038 0.962 43 H 0.038 0.962 44 H 0.071 0.929 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -24.291 7.523 -13.005 28.562 hybrid contribution -0.004 -0.770 1.335 1.541 sum -24.295 6.753 -11.671 27.786 Atomic orbital electron populations 1.21969 0.94093 1.01981 1.02038 1.19507 0.95665 0.95197 0.92547 1.21916 1.01624 0.94368 1.01915 1.21920 1.01623 1.00228 0.96052 1.19790 0.92904 0.99040 0.96355 1.21366 0.99953 0.96853 0.93727 1.21091 0.95325 0.99974 0.97899 1.21356 0.93308 0.98074 0.98354 1.20048 0.93102 1.02611 0.97171 1.18303 0.87872 0.78463 0.81668 1.90762 1.56947 1.48654 1.45626 1.46145 1.09652 1.57458 1.23836 1.21686 0.78352 1.01235 0.99374 1.21895 1.02060 0.98441 0.93515 1.19024 0.87923 0.97441 0.96970 1.21162 0.91987 1.36320 1.06684 0.92698 1.25033 0.96252 0.95935 0.97262 1.69955 0.98462 1.46403 1.38438 0.86633 0.77031 0.80330 0.83847 1.20247 1.21267 1.20242 1.21092 0.95067 0.95631 0.95821 0.92231 0.92247 0.92231 0.92079 0.92224 0.92432 0.92436 0.92218 0.92078 0.85313 0.85457 0.85541 0.76766 0.91585 0.91591 0.92694 0.92697 0.96246 0.96246 0.92856 0.84791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.84 7.13 37.16 0.26 -0.58 16 2 C -0.03 -0.22 0.85 -155.66 -0.13 -0.35 16 3 C -0.14 -1.05 8.28 37.15 0.31 -0.74 16 4 C -0.14 -1.05 8.29 37.16 0.31 -0.74 16 5 C -0.08 -0.77 4.76 -104.68 -0.50 -1.26 16 6 C -0.10 -0.85 8.97 -39.49 -0.35 -1.20 16 7 C -0.12 -1.07 10.03 -39.64 -0.40 -1.47 16 8 C -0.09 -0.94 9.54 -39.18 -0.37 -1.32 16 9 C -0.13 -1.62 5.87 -104.97 -0.62 -2.23 16 10 C 0.55 8.80 7.77 -12.33 -0.10 8.70 16 11 O -0.54 -10.60 16.35 5.32 0.09 -10.52 16 12 N -0.72 -10.84 5.51 -61.25 -0.34 -11.18 16 13 C 0.12 2.09 5.67 -4.05 -0.02 2.06 16 14 C -0.12 -2.38 5.27 -26.74 -0.14 -2.52 16 15 C 0.02 0.61 4.97 -27.89 -0.14 0.47 16 16 C -0.52 -14.64 9.11 -34.44 -0.31 -14.96 16 17 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 18 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 19 N -0.89 -26.90 13.29 55.43 0.74 -26.16 16 20 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 C -0.06 -0.68 8.25 -39.19 -0.32 -1.00 16 25 H 0.06 0.33 7.50 -51.93 -0.39 -0.06 16 26 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.06 0.33 7.51 -51.93 -0.39 -0.06 16 28 H 0.06 0.51 7.38 -51.93 -0.38 0.13 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.43 8.14 -51.92 -0.42 0.01 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 0.51 7.38 -51.93 -0.38 0.13 16 34 H 0.13 0.80 5.87 -52.49 -0.31 0.49 16 35 H 0.13 0.79 8.06 -52.49 -0.42 0.36 16 36 H 0.13 1.07 6.41 -52.49 -0.34 0.73 16 37 H 0.40 4.83 6.51 -40.82 -0.27 4.56 16 38 H 0.07 1.25 8.14 -51.92 -0.42 0.83 16 39 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 45 H 0.13 1.67 6.68 -52.49 -0.35 1.32 16 LS Contribution 365.16 15.07 5.50 5.50 Total: -1.00 -32.46 365.16 -9.08 -41.54 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -7.42 Total: -0.07 kcal Atomic # 6 Polarization: -12.99 SS G_CDS: -2.63 Total: -15.62 kcal Atomic # 7 Polarization: -37.74 SS G_CDS: 0.40 Total: -37.34 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: 0.09 Total: -10.52 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.46 -9.08 -41.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582733955.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.637 kcal (2) G-P(sol) polarization free energy of solvation -32.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds