Wall clock time and date at job start Tue Mar 31 2020 06:40:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.46956 * 2 1 4 4 C 1.53004 * 109.47238 * 240.00215 * 2 1 3 5 5 C 1.50699 * 109.47254 * 120.00181 * 2 1 3 6 6 C 1.38385 * 119.92435 * 359.97438 * 5 2 1 7 7 C 1.38342 * 120.29104 * 180.02562 * 6 5 2 8 8 C 1.37979 * 120.14224 * 359.97438 * 7 6 5 9 9 C 1.39556 * 119.85586 * 0.02562 * 8 7 6 10 10 C 1.47847 * 120.14286 * 180.02562 * 9 8 7 11 11 O 1.21547 * 119.99443 * 179.97438 * 10 9 8 12 12 N 1.34776 * 119.99889 * 359.97142 * 10 9 8 13 13 C 1.46500 * 119.99682 * 180.02562 * 12 10 9 14 14 C 1.52994 * 109.47329 * 179.97438 * 13 12 10 15 15 C 1.52995 * 109.47602 * 179.97438 * 14 13 12 16 16 C 1.50699 * 109.47625 * 180.02562 * 15 14 13 17 17 H 1.08002 * 119.99867 * 359.97438 * 16 15 14 18 18 C 1.37877 * 120.00348 * 180.02562 * 16 15 14 19 19 N 1.31511 * 119.99926 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99918 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.46895 * 60.00370 * 20 18 16 22 22 H 1.48505 * 109.46689 * 179.97438 * 20 18 16 23 23 H 1.48490 * 109.47400 * 300.00072 * 20 18 16 24 24 C 1.37933 * 119.92803 * 180.02562 * 5 2 1 25 25 H 1.08999 * 109.47174 * 299.99771 * 1 2 3 26 26 H 1.09004 * 109.47216 * 59.99989 * 1 2 3 27 27 H 1.09003 * 109.46806 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47092 * 180.02562 * 3 2 1 29 29 H 1.08995 * 109.47755 * 300.00066 * 3 2 1 30 30 H 1.08999 * 109.46992 * 60.00117 * 3 2 1 31 31 H 1.09009 * 109.46884 * 299.99846 * 4 2 1 32 32 H 1.09004 * 109.47184 * 59.99776 * 4 2 1 33 33 H 1.08999 * 109.47162 * 180.02562 * 4 2 1 34 34 H 1.08001 * 119.85329 * 359.74701 * 6 5 2 35 35 H 1.07993 * 119.92336 * 180.02562 * 7 6 5 36 36 H 1.08000 * 120.06786 * 180.02562 * 8 7 6 37 37 H 0.96994 * 120.00442 * 0.02562 * 12 10 9 38 38 H 1.09009 * 109.46819 * 300.00070 * 13 12 10 39 39 H 1.09001 * 109.47363 * 59.99520 * 13 12 10 40 40 H 1.09001 * 109.47424 * 300.00132 * 14 13 12 41 41 H 1.09001 * 109.47242 * 59.99504 * 14 13 12 42 42 H 1.09001 * 109.47611 * 300.00435 * 15 14 13 43 43 H 1.09001 * 109.46930 * 59.99677 * 15 14 13 44 44 H 0.97002 * 119.99907 * 180.02562 * 19 18 16 45 45 H 1.08000 * 120.07460 * 359.95066 * 24 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0324 -0.7104 1.2304 6 6 1.1317 -1.2353 2.1406 7 6 1.5845 -1.8885 3.2729 8 6 2.9388 -2.0210 3.5014 9 6 3.8524 -1.4940 2.5875 10 6 5.3049 -1.6329 2.8257 11 8 6.0982 -1.1732 2.0278 12 7 5.7493 -2.2691 3.9277 13 6 7.1886 -2.4061 4.1640 14 6 7.4207 -3.1616 5.4740 15 6 8.9238 -3.3053 5.7205 16 6 9.1524 -4.0500 7.0106 17 1 8.3098 -4.3867 7.5964 18 6 10.4372 -4.3005 7.4437 19 7 11.4632 -3.8893 6.7312 20 14 10.7204 -5.2230 9.0432 21 1 10.1029 -6.5705 8.9534 22 1 12.1795 -5.3625 9.2823 23 1 10.1043 -4.4698 10.1648 24 6 3.3888 -0.8351 1.4475 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6766 1.9562 0.8900 31 1 1.6767 -1.7490 -1.2493 32 1 1.6767 -0.2074 -2.1393 33 1 3.1300 -0.7216 -1.2491 34 1 0.0707 -1.1307 1.9684 35 1 0.8765 -2.2962 3.9790 36 1 3.2910 -2.5316 4.3856 37 1 5.1162 -2.6361 4.5643 38 1 7.6409 -2.9587 3.3404 39 1 7.6418 -1.4170 4.2301 40 1 6.9683 -2.6087 6.2974 41 1 6.9674 -4.1507 5.4083 42 1 9.3758 -3.8584 4.8972 43 1 9.3774 -2.3164 5.7861 44 1 12.3671 -4.0659 7.0357 45 1 4.0906 -0.4250 0.7364 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000582733955.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:04 Heat of formation + Delta-G solvation = -64.576609 kcal Electronic energy + Delta-G solvation = -21959.878081 eV Core-core repulsion = 18747.066441 eV Total energy + Delta-G solvation = -3212.811639 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.43201 -40.07059 -37.17281 -37.01925 -35.24259 -33.24279 -32.15240 -30.96840 -28.79428 -28.13050 -28.12644 -25.49598 -24.30706 -23.46274 -22.37097 -21.63731 -20.08049 -18.69001 -18.34081 -17.37049 -16.85469 -16.76168 -16.47969 -15.94127 -15.77687 -15.49710 -15.09986 -14.94350 -14.78676 -14.38514 -14.24264 -13.79135 -13.75547 -13.46213 -13.12966 -12.94019 -12.73728 -12.72001 -12.61929 -12.54270 -12.52826 -12.42572 -11.84228 -11.72940 -11.69879 -11.60175 -11.43059 -11.27996 -10.95471 -10.55586 -10.27739 -9.87761 -9.70819 -8.19938 -6.31800 -0.14342 0.39262 1.41410 1.44748 1.52558 1.81339 2.09854 2.42240 2.85987 3.13641 3.58103 3.64354 3.83786 4.06621 4.10930 4.11222 4.17182 4.17609 4.33940 4.37559 4.50518 4.52602 4.76081 4.77611 4.84754 4.90245 4.90527 4.93228 4.97853 5.03623 5.04504 5.14053 5.15627 5.24495 5.32606 5.35274 5.39228 5.40941 5.50034 5.51818 5.65126 5.68385 5.82681 5.95085 6.20843 6.48695 6.85332 7.12898 7.37783 8.92044 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.039045 B = 0.002359 C = 0.002262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.958137 B =11867.659338 C =12377.654238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.030 4.030 3 C -0.141 4.141 4 C -0.141 4.141 5 C -0.083 4.083 6 C -0.092 4.092 7 C -0.120 4.120 8 C -0.092 4.092 9 C -0.151 4.151 10 C 0.548 3.452 11 O -0.589 6.589 12 N -0.708 5.708 13 C 0.129 3.871 14 C -0.101 4.101 15 C 0.024 3.976 16 C -0.542 4.542 17 H 0.068 0.932 18 C -0.005 4.005 19 N -0.936 5.936 20 Si 0.969 3.031 21 H -0.265 1.265 22 H -0.286 1.286 23 H -0.265 1.265 24 C -0.073 4.073 25 H 0.066 0.934 26 H 0.068 0.932 27 H 0.066 0.934 28 H 0.041 0.959 29 H 0.073 0.927 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.073 0.927 33 H 0.041 0.959 34 H 0.159 0.841 35 H 0.161 0.839 36 H 0.144 0.856 37 H 0.414 0.586 38 H 0.050 0.950 39 H 0.050 0.950 40 H 0.070 0.930 41 H 0.069 0.931 42 H -0.008 1.008 43 H -0.008 1.008 44 H 0.263 0.737 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.796 6.423 -11.093 31.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.030 4.030 3 C -0.198 4.198 4 C -0.198 4.198 5 C -0.083 4.083 6 C -0.110 4.110 7 C -0.137 4.137 8 C -0.111 4.111 9 C -0.154 4.154 10 C 0.337 3.663 11 O -0.471 6.471 12 N -0.360 5.360 13 C 0.005 3.995 14 C -0.139 4.139 15 C -0.014 4.014 16 C -0.580 4.580 17 H 0.086 0.914 18 C -0.202 4.202 19 N -0.576 5.576 20 Si 0.793 3.207 21 H -0.190 1.190 22 H -0.212 1.212 23 H -0.190 1.190 24 C -0.092 4.092 25 H 0.085 0.915 26 H 0.087 0.913 27 H 0.085 0.915 28 H 0.061 0.939 29 H 0.092 0.908 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.092 0.908 33 H 0.061 0.939 34 H 0.177 0.823 35 H 0.179 0.821 36 H 0.162 0.838 37 H 0.252 0.748 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.010 0.990 43 H 0.010 0.990 44 H 0.072 0.928 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -28.029 6.736 -11.634 31.086 hybrid contribution 1.096 -0.490 0.847 1.469 sum -26.933 6.246 -10.787 29.677 Atomic orbital electron populations 1.21958 0.92093 1.02759 1.02978 1.19572 0.97172 0.94694 0.91572 1.21912 1.00485 0.94755 1.02624 1.21916 1.00483 1.00525 0.96853 1.20018 0.91926 0.98955 0.97404 1.21778 1.01214 0.95125 0.92867 1.21497 0.94970 0.98976 0.98305 1.21583 0.93800 0.97549 0.98157 1.19859 0.91198 1.05341 0.98959 1.18886 0.89273 0.77298 0.80862 1.90729 1.58515 1.50661 1.47178 1.45890 1.08494 1.57399 1.24225 1.21290 0.80224 0.99897 0.98092 1.21602 0.97955 0.99730 0.94614 1.18940 0.91675 0.95227 0.95578 1.21646 0.92611 1.36254 1.07455 0.91410 1.26054 0.96033 0.96916 1.01234 1.70110 0.98978 1.47889 1.40591 0.85444 0.76916 0.79237 0.79102 1.18961 1.21208 1.18953 1.21066 0.96144 0.96425 0.95582 0.91462 0.91250 0.91469 0.93948 0.90801 0.92386 0.92395 0.90794 0.93948 0.82348 0.82109 0.83798 0.74751 0.93117 0.93122 0.91179 0.91184 0.98988 0.98989 0.92803 0.86868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 7.13 71.98 0.51 -0.69 16 2 C -0.03 -0.41 0.85 -52.93 -0.05 -0.46 16 3 C -0.14 -2.01 8.28 71.98 0.60 -1.42 16 4 C -0.14 -2.01 8.29 71.98 0.60 -1.42 16 5 C -0.08 -1.47 4.76 -19.90 -0.09 -1.56 16 6 C -0.09 -1.24 8.97 22.33 0.20 -1.04 16 7 C -0.12 -1.61 10.03 22.23 0.22 -1.39 16 8 C -0.09 -1.68 9.54 22.53 0.21 -1.47 16 9 C -0.15 -3.86 5.87 -20.09 -0.12 -3.98 16 10 C 0.55 18.12 7.77 86.79 0.67 18.79 16 11 O -0.59 -24.62 16.35 -3.86 -0.06 -24.69 16 12 N -0.71 -21.32 5.51 -465.98 -2.57 -23.88 16 13 C 0.13 4.77 5.67 86.38 0.49 5.26 16 14 C -0.10 -3.96 5.27 30.59 0.16 -3.80 16 15 C 0.02 1.24 4.97 29.85 0.15 1.39 16 16 C -0.54 -30.38 9.11 25.60 0.23 -30.15 16 17 H 0.07 3.54 7.74 -2.91 -0.02 3.52 16 18 C 0.00 -0.27 5.46 84.66 0.46 0.19 16 19 N -0.94 -57.62 13.29 21.45 0.28 -57.33 16 20 Si 0.97 43.90 29.54 68.60 2.03 45.93 16 21 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 22 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 23 H -0.26 -11.41 7.11 99.48 0.71 -10.71 16 24 C -0.07 -1.78 8.25 22.53 0.19 -1.60 16 25 H 0.07 0.49 7.50 -2.39 -0.02 0.47 16 26 H 0.07 0.48 8.14 -2.39 -0.02 0.47 16 27 H 0.07 0.49 7.51 -2.39 -0.02 0.47 16 28 H 0.04 0.75 7.38 -2.38 -0.02 0.73 16 29 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 32 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.04 0.75 7.38 -2.39 -0.02 0.73 16 34 H 0.16 1.21 5.87 -2.91 -0.02 1.19 16 35 H 0.16 1.13 8.06 -2.91 -0.02 1.10 16 36 H 0.14 2.01 6.41 -2.91 -0.02 1.99 16 37 H 0.41 9.44 6.51 -92.71 -0.60 8.84 16 38 H 0.05 2.03 8.14 -2.38 -0.02 2.01 16 39 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.07 2.54 8.14 -2.39 -0.02 2.53 16 41 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 42 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 43 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 44 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 45 H 0.11 3.14 6.68 -2.91 -0.02 3.12 16 Total: -1.00 -72.93 365.16 4.48 -68.45 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: 0.36 Total: 14.86 kcal Atomic # 6 Polarization: -27.77 SS G_CDS: 4.44 Total: -23.33 kcal Atomic # 7 Polarization: -78.94 SS G_CDS: -2.28 Total: -81.22 kcal Atomic # 8 Polarization: -24.62 SS G_CDS: -0.06 Total: -24.69 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -72.93 4.48 -68.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582733955.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.869 kcal (2) G-P(sol) polarization free energy of solvation -72.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds