Wall clock time and date at job start Tue Mar 31 2020 06:29:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47151 * 2 1 4 4 C 1.50706 * 109.46820 * 119.99627 * 2 1 3 5 5 C 1.38301 * 119.96281 * 299.95584 * 4 2 1 6 6 C 1.38262 * 120.14130 * 180.02562 * 5 4 2 7 7 C 1.38142 * 120.06789 * 0.04138 * 6 5 4 8 8 C 1.38853 * 119.92894 * 359.97438 * 7 6 5 9 9 N 1.39924 * 120.07023 * 180.02562 * 8 7 6 10 10 C 1.34773 * 119.99818 * 213.31387 * 9 8 7 11 11 O 1.21287 * 120.00508 * 5.27456 * 10 9 8 12 12 C 1.50701 * 119.99846 * 185.27752 * 10 9 8 13 13 C 1.53000 * 109.47519 * 179.97438 * 12 10 9 14 14 C 1.52993 * 109.47468 * 180.02562 * 13 12 10 15 15 C 1.53001 * 109.47083 * 180.02562 * 14 13 12 16 16 C 1.50701 * 109.47134 * 179.97438 * 15 14 13 17 17 H 1.08011 * 119.99958 * 359.97438 * 16 15 14 18 18 C 1.37873 * 120.00194 * 179.97438 * 16 15 14 19 19 N 1.31510 * 120.00220 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00166 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47306 * 59.99836 * 20 18 16 22 22 H 1.48502 * 109.47270 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47318 * 300.00018 * 20 18 16 24 24 C 1.38084 * 119.96233 * 120.00126 * 4 2 1 25 25 H 1.09008 * 109.47069 * 60.00134 * 1 2 3 26 26 H 1.08999 * 109.47365 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47332 * 300.00824 * 1 2 3 28 28 H 1.08999 * 109.47243 * 239.99706 * 2 1 3 29 29 H 1.08998 * 109.46985 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.46771 * 299.99196 * 3 2 1 31 31 H 1.08999 * 109.47287 * 59.99733 * 3 2 1 32 32 H 1.08002 * 119.93295 * 0.04609 * 5 4 2 33 33 H 1.07995 * 119.97093 * 180.02562 * 6 5 4 34 34 H 1.07998 * 120.03458 * 180.02562 * 7 6 5 35 35 H 0.97000 * 120.00045 * 33.31775 * 9 8 7 36 36 H 1.09004 * 109.47102 * 300.00356 * 12 10 9 37 37 H 1.09003 * 109.47451 * 59.99619 * 12 10 9 38 38 H 1.09003 * 109.46734 * 300.00365 * 13 12 10 39 39 H 1.09003 * 109.47048 * 59.99400 * 13 12 10 40 40 H 1.09011 * 109.47228 * 299.99666 * 14 13 12 41 41 H 1.08998 * 109.47113 * 59.99904 * 14 13 12 42 42 H 1.09005 * 109.46498 * 299.99263 * 15 14 13 43 43 H 1.08998 * 109.47537 * 59.99781 * 15 14 13 44 44 H 0.96996 * 120.00460 * 179.97438 * 19 18 16 45 45 H 1.07999 * 120.04002 * 0.25144 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2306 5 6 1.6984 -0.2366 2.4863 6 6 2.1576 -0.8851 3.6177 7 6 2.9525 -2.0085 3.4970 8 6 3.2897 -2.4864 2.2377 9 7 4.0942 -3.6243 2.1120 10 6 4.9541 -3.7309 1.0797 11 8 5.1006 -2.8018 0.3139 12 6 5.7336 -5.0046 0.8768 13 6 6.6289 -4.8639 -0.3559 14 6 7.4198 -6.1572 -0.5622 15 6 8.3155 -6.0162 -1.7946 16 6 9.0950 -7.2899 -1.9975 17 1 8.9648 -8.1171 -1.3153 18 6 9.9743 -7.3992 -3.0538 19 7 10.1325 -6.3921 -3.8846 20 14 10.9410 -8.9777 -3.3049 21 1 9.9993 -10.1087 -3.5035 22 1 11.8094 -8.8413 -4.5017 23 1 11.7824 -9.2384 -2.1093 24 6 2.8261 -1.8330 1.1031 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5140 0.8899 28 1 1.8934 -0.5139 -0.8899 29 1 3.1300 1.4425 -0.0005 30 1 1.6768 1.9563 -0.8901 31 1 1.6767 1.9564 0.8899 32 1 1.0774 0.6417 2.5833 33 1 1.8949 -0.5130 4.5969 34 1 3.3106 -2.5149 4.3811 35 1 4.0330 -4.3365 2.7678 36 1 6.3507 -5.1967 1.7546 37 1 5.0421 -5.8344 0.7303 38 1 6.0114 -4.6721 -1.2334 39 1 7.3204 -4.0340 -0.2099 40 1 8.0373 -6.3495 0.3153 41 1 6.7280 -6.9867 -0.7085 42 1 7.6983 -5.8238 -2.6722 43 1 9.0073 -5.1867 -1.6479 44 1 10.7513 -6.4689 -4.6276 45 1 3.0904 -2.1997 0.1223 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588147324.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:11 Heat of formation + Delta-G solvation = -51.084718 kcal Electronic energy + Delta-G solvation = -21795.682146 eV Core-core repulsion = 18583.455559 eV Total energy + Delta-G solvation = -3212.226587 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.68802 -39.02135 -36.10657 -34.92994 -34.23511 -32.65286 -30.65785 -30.01546 -28.93082 -27.36402 -25.73273 -23.53396 -23.35663 -22.09087 -20.39505 -20.08238 -19.96951 -17.47555 -16.84614 -16.36429 -16.11908 -15.87988 -15.44191 -14.69354 -14.47229 -14.24580 -14.01910 -13.76966 -13.73953 -13.53026 -12.77624 -12.63457 -12.42538 -12.31172 -12.19884 -11.95506 -11.70104 -11.62329 -11.41097 -11.03778 -10.97970 -10.91756 -10.55503 -10.54239 -10.43143 -10.38917 -9.85793 -9.62266 -9.24109 -9.00366 -8.89170 -8.30466 -8.23185 -5.95234 -3.97968 1.11685 1.25475 2.59592 2.95469 3.35240 3.39683 3.41847 3.64520 4.39708 4.48817 4.58778 4.77734 4.85314 4.94870 4.98083 5.08315 5.21715 5.25999 5.30191 5.36923 5.38599 5.40026 5.46658 5.58624 5.64920 5.72058 5.80239 5.91114 5.98354 6.02721 6.10045 6.17314 6.20442 6.27123 6.34652 6.50484 6.54764 6.81156 6.90729 6.99153 7.18151 7.27744 7.73346 7.89299 8.05693 8.09167 8.47437 9.09500 9.65671 11.16090 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.027380 B = 0.002361 C = 0.002224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.405699 B =11857.835414 C =12587.815616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.059 4.059 3 C -0.143 4.143 4 C -0.056 4.056 5 C -0.136 4.136 6 C -0.099 4.099 7 C -0.156 4.156 8 C 0.155 3.845 9 N -0.682 5.682 10 C 0.511 3.489 11 O -0.513 6.513 12 C -0.138 4.138 13 C -0.104 4.104 14 C -0.110 4.110 15 C 0.020 3.980 16 C -0.521 4.521 17 H 0.054 0.946 18 C 0.055 3.945 19 N -0.896 5.896 20 Si 0.892 3.108 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 C -0.120 4.120 25 H 0.058 0.942 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.079 0.921 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.120 0.880 33 H 0.123 0.877 34 H 0.123 0.877 35 H 0.410 0.590 36 H 0.093 0.907 37 H 0.095 0.905 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.047 0.953 41 H 0.047 0.953 42 H 0.016 0.984 43 H 0.016 0.984 44 H 0.261 0.739 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.647 11.836 15.617 28.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.078 4.078 3 C -0.200 4.200 4 C -0.057 4.057 5 C -0.155 4.155 6 C -0.118 4.118 7 C -0.176 4.176 8 C 0.060 3.940 9 N -0.328 5.328 10 C 0.300 3.700 11 O -0.387 6.387 12 C -0.177 4.177 13 C -0.142 4.142 14 C -0.148 4.148 15 C -0.017 4.017 16 C -0.560 4.560 17 H 0.072 0.928 18 C -0.146 4.146 19 N -0.535 5.535 20 Si 0.720 3.280 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.203 1.203 24 C -0.140 4.140 25 H 0.077 0.923 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.098 0.902 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.138 0.862 33 H 0.141 0.859 34 H 0.141 0.859 35 H 0.246 0.754 36 H 0.112 0.888 37 H 0.113 0.887 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.034 0.966 43 H 0.034 0.966 44 H 0.070 0.930 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -20.385 12.501 14.846 28.147 hybrid contribution 0.623 -1.268 0.260 1.436 sum -19.762 11.233 15.106 27.293 Atomic orbital electron populations 1.21848 0.94299 1.01977 1.01828 1.20151 0.95842 0.96204 0.95569 1.21843 1.01589 0.94870 1.01730 1.19736 0.96347 0.94811 0.94797 1.20905 1.01956 1.00732 0.91871 1.20877 0.97391 0.95023 0.98520 1.20869 1.02739 0.98481 0.95552 1.17784 0.93045 0.89302 0.93834 1.43771 1.39596 1.20077 1.29367 1.21342 0.78651 0.90449 0.79579 1.90726 1.64110 1.39978 1.43861 1.21828 0.99394 0.94028 1.02496 1.21473 0.97683 1.00046 0.95002 1.21650 0.98000 0.94422 1.00709 1.19092 0.93926 0.96935 0.91751 1.21243 1.23274 1.00176 1.11262 0.92806 1.25040 0.97080 0.96384 0.96056 1.69959 1.36818 1.30857 1.15845 0.86668 0.79990 0.83867 0.77508 1.20283 1.21314 1.20281 1.21106 0.97605 0.96685 0.98643 0.92344 0.92564 0.92520 0.90219 0.92309 0.92345 0.92560 0.86235 0.85889 0.85922 0.75416 0.88825 0.88713 0.91711 0.91691 0.93427 0.93419 0.96583 0.96587 0.92968 0.84740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 9.01 37.16 0.33 -0.74 16 2 C -0.06 -0.55 3.09 -91.77 -0.28 -0.83 16 3 C -0.14 -1.21 9.01 37.16 0.33 -0.87 16 4 C -0.06 -0.61 4.78 -104.65 -0.50 -1.11 16 5 C -0.14 -1.26 8.71 -39.55 -0.34 -1.61 16 6 C -0.10 -0.87 10.04 -39.61 -0.40 -1.27 16 7 C -0.16 -1.49 9.96 -39.39 -0.39 -1.88 16 8 C 0.15 1.81 6.28 -83.69 -0.53 1.28 16 9 N -0.68 -7.27 5.34 -9.86 -0.05 -7.32 16 10 C 0.51 7.02 7.57 -10.99 -0.08 6.94 16 11 O -0.51 -9.11 13.67 5.55 0.08 -9.03 16 12 C -0.14 -1.75 5.70 -27.88 -0.16 -1.91 16 13 C -0.10 -1.82 4.50 -26.73 -0.12 -1.94 16 14 C -0.11 -2.24 5.15 -26.73 -0.14 -2.38 16 15 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 16 C -0.52 -15.02 9.11 -34.44 -0.31 -15.34 16 17 H 0.05 1.49 7.74 -52.48 -0.41 1.08 16 18 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 19 N -0.90 -27.58 13.29 55.43 0.74 -26.85 16 20 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 24 C -0.12 -1.54 8.29 -39.39 -0.33 -1.86 16 25 H 0.06 0.38 8.14 -51.92 -0.42 -0.04 16 26 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.38 7.39 -51.93 -0.38 0.00 16 28 H 0.08 0.81 7.87 -51.93 -0.41 0.40 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.42 7.38 -51.93 -0.38 0.03 16 32 H 0.12 0.88 7.09 -52.49 -0.37 0.51 16 33 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 34 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 35 H 0.41 2.90 8.82 -40.82 -0.36 2.54 16 36 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 39 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 40 H 0.05 0.93 8.14 -51.92 -0.42 0.51 16 41 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 44 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 45 H 0.13 1.96 6.29 -52.49 -0.33 1.63 16 LS Contribution 369.41 15.07 5.57 5.57 Total: -1.00 -33.71 369.41 -9.54 -43.25 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -7.69 Total: -0.91 kcal Atomic # 6 Polarization: -18.45 SS G_CDS: -3.15 Total: -21.61 kcal Atomic # 7 Polarization: -34.85 SS G_CDS: 0.68 Total: -34.17 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: 0.08 Total: -9.03 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.71 -9.54 -43.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588147324.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.832 kcal (2) G-P(sol) polarization free energy of solvation -33.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds