Wall clock time and date at job start Tue Mar 31 2020 06:29:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47151 * 2 1 4 4 C 1.50706 * 109.46820 * 119.99627 * 2 1 3 5 5 C 1.38301 * 119.96281 * 299.95584 * 4 2 1 6 6 C 1.38262 * 120.14130 * 180.02562 * 5 4 2 7 7 C 1.38142 * 120.06789 * 0.04138 * 6 5 4 8 8 C 1.38853 * 119.92894 * 359.97438 * 7 6 5 9 9 N 1.39924 * 120.07023 * 180.02562 * 8 7 6 10 10 C 1.34773 * 119.99818 * 213.31387 * 9 8 7 11 11 O 1.21287 * 120.00508 * 5.27456 * 10 9 8 12 12 C 1.50701 * 119.99846 * 185.27752 * 10 9 8 13 13 C 1.53000 * 109.47519 * 179.97438 * 12 10 9 14 14 C 1.52993 * 109.47468 * 180.02562 * 13 12 10 15 15 C 1.53001 * 109.47083 * 180.02562 * 14 13 12 16 16 C 1.50701 * 109.47134 * 179.97438 * 15 14 13 17 17 H 1.08011 * 119.99958 * 359.97438 * 16 15 14 18 18 C 1.37873 * 120.00194 * 179.97438 * 16 15 14 19 19 N 1.31510 * 120.00220 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00166 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47306 * 59.99836 * 20 18 16 22 22 H 1.48502 * 109.47270 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47318 * 300.00018 * 20 18 16 24 24 C 1.38084 * 119.96233 * 120.00126 * 4 2 1 25 25 H 1.09008 * 109.47069 * 60.00134 * 1 2 3 26 26 H 1.08999 * 109.47365 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47332 * 300.00824 * 1 2 3 28 28 H 1.08999 * 109.47243 * 239.99706 * 2 1 3 29 29 H 1.08998 * 109.46985 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.46771 * 299.99196 * 3 2 1 31 31 H 1.08999 * 109.47287 * 59.99733 * 3 2 1 32 32 H 1.08002 * 119.93295 * 0.04609 * 5 4 2 33 33 H 1.07995 * 119.97093 * 180.02562 * 6 5 4 34 34 H 1.07998 * 120.03458 * 180.02562 * 7 6 5 35 35 H 0.97000 * 120.00045 * 33.31775 * 9 8 7 36 36 H 1.09004 * 109.47102 * 300.00356 * 12 10 9 37 37 H 1.09003 * 109.47451 * 59.99619 * 12 10 9 38 38 H 1.09003 * 109.46734 * 300.00365 * 13 12 10 39 39 H 1.09003 * 109.47048 * 59.99400 * 13 12 10 40 40 H 1.09011 * 109.47228 * 299.99666 * 14 13 12 41 41 H 1.08998 * 109.47113 * 59.99904 * 14 13 12 42 42 H 1.09005 * 109.46498 * 299.99263 * 15 14 13 43 43 H 1.08998 * 109.47537 * 59.99781 * 15 14 13 44 44 H 0.96996 * 120.00460 * 179.97438 * 19 18 16 45 45 H 1.07999 * 120.04002 * 0.25144 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2306 5 6 1.6984 -0.2366 2.4863 6 6 2.1576 -0.8851 3.6177 7 6 2.9525 -2.0085 3.4970 8 6 3.2897 -2.4864 2.2377 9 7 4.0942 -3.6243 2.1120 10 6 4.9541 -3.7309 1.0797 11 8 5.1006 -2.8018 0.3139 12 6 5.7336 -5.0046 0.8768 13 6 6.6289 -4.8639 -0.3559 14 6 7.4198 -6.1572 -0.5622 15 6 8.3155 -6.0162 -1.7946 16 6 9.0950 -7.2899 -1.9975 17 1 8.9648 -8.1171 -1.3153 18 6 9.9743 -7.3992 -3.0538 19 7 10.1325 -6.3921 -3.8846 20 14 10.9410 -8.9777 -3.3049 21 1 9.9993 -10.1087 -3.5035 22 1 11.8094 -8.8413 -4.5017 23 1 11.7824 -9.2384 -2.1093 24 6 2.8261 -1.8330 1.1031 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5140 0.8899 28 1 1.8934 -0.5139 -0.8899 29 1 3.1300 1.4425 -0.0005 30 1 1.6768 1.9563 -0.8901 31 1 1.6767 1.9564 0.8899 32 1 1.0774 0.6417 2.5833 33 1 1.8949 -0.5130 4.5969 34 1 3.3106 -2.5149 4.3811 35 1 4.0330 -4.3365 2.7678 36 1 6.3507 -5.1967 1.7546 37 1 5.0421 -5.8344 0.7303 38 1 6.0114 -4.6721 -1.2334 39 1 7.3204 -4.0340 -0.2099 40 1 8.0373 -6.3495 0.3153 41 1 6.7280 -6.9867 -0.7085 42 1 7.6983 -5.8238 -2.6722 43 1 9.0073 -5.1867 -1.6479 44 1 10.7513 -6.4689 -4.6276 45 1 3.0904 -2.1997 0.1223 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588147324.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:11 Heat of formation + Delta-G solvation = -70.141373 kcal Electronic energy + Delta-G solvation = -21796.508505 eV Core-core repulsion = 18583.455559 eV Total energy + Delta-G solvation = -3213.052946 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.63096 -39.92896 -37.03682 -36.54480 -35.10438 -34.62914 -31.89420 -31.09379 -30.02182 -28.00733 -27.46678 -24.79625 -24.21182 -23.39262 -21.81705 -21.28503 -20.92386 -18.44740 -18.32865 -17.81092 -17.19530 -16.91621 -16.52602 -16.31636 -15.69983 -15.33808 -15.06943 -14.64941 -14.56594 -14.47295 -14.36511 -13.84471 -13.61192 -13.41645 -13.31634 -13.02100 -12.95715 -12.80524 -12.71472 -12.38410 -12.18186 -12.15633 -12.12790 -11.76290 -11.64299 -11.40073 -11.36730 -11.26110 -11.15552 -10.78168 -10.55125 -9.68263 -9.06511 -8.19205 -6.31629 0.30996 0.46545 1.39865 1.43981 1.51826 1.58250 2.04873 2.41602 2.86597 3.13433 3.59614 3.80221 3.90165 4.01004 4.11914 4.13984 4.27415 4.29033 4.40199 4.49721 4.56403 4.62978 4.66285 4.71438 4.78900 4.80898 4.85181 4.92791 4.96131 5.05086 5.16448 5.21299 5.27987 5.31425 5.34939 5.36316 5.39570 5.43160 5.55535 5.58836 5.75633 5.76998 5.87266 6.11915 6.24373 6.42593 6.86843 7.13526 7.38091 8.92947 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.027380 B = 0.002361 C = 0.002224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.405699 B =11857.835414 C =12587.815616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.063 4.063 3 C -0.139 4.139 4 C -0.066 4.066 5 C -0.136 4.136 6 C -0.096 4.096 7 C -0.153 4.153 8 C 0.132 3.868 9 N -0.664 5.664 10 C 0.510 3.490 11 O -0.565 6.565 12 C -0.125 4.125 13 C -0.097 4.097 14 C -0.095 4.095 15 C 0.018 3.982 16 C -0.542 4.542 17 H 0.067 0.933 18 C -0.007 4.007 19 N -0.939 5.939 20 Si 0.970 3.030 21 H -0.264 1.264 22 H -0.286 1.286 23 H -0.264 1.264 24 C -0.150 4.150 25 H 0.067 0.933 26 H 0.048 0.952 27 H 0.071 0.929 28 H 0.057 0.943 29 H 0.038 0.962 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.143 0.857 33 H 0.157 0.843 34 H 0.150 0.850 35 H 0.429 0.571 36 H 0.125 0.875 37 H 0.123 0.877 38 H 0.042 0.958 39 H 0.043 0.957 40 H 0.062 0.938 41 H 0.062 0.938 42 H -0.016 1.016 43 H -0.016 1.016 44 H 0.263 0.737 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.850 10.865 18.685 30.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.081 4.081 3 C -0.196 4.196 4 C -0.067 4.067 5 C -0.154 4.154 6 C -0.115 4.115 7 C -0.173 4.173 8 C 0.038 3.962 9 N -0.311 5.311 10 C 0.299 3.701 11 O -0.442 6.442 12 C -0.164 4.164 13 C -0.135 4.135 14 C -0.133 4.133 15 C -0.019 4.019 16 C -0.580 4.580 17 H 0.085 0.915 18 C -0.205 4.205 19 N -0.579 5.579 20 Si 0.794 3.206 21 H -0.189 1.189 22 H -0.211 1.211 23 H -0.189 1.189 24 C -0.171 4.171 25 H 0.086 0.914 26 H 0.067 0.933 27 H 0.090 0.910 28 H 0.075 0.925 29 H 0.057 0.943 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.161 0.839 33 H 0.174 0.826 34 H 0.168 0.832 35 H 0.268 0.732 36 H 0.143 0.857 37 H 0.141 0.859 38 H 0.061 0.939 39 H 0.062 0.938 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.002 0.998 43 H 0.002 0.998 44 H 0.072 0.928 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -21.620 11.505 17.969 30.376 hybrid contribution 0.952 -0.884 -0.693 1.472 sum -20.668 10.621 17.276 28.956 Atomic orbital electron populations 1.21804 0.92590 1.01912 1.03020 1.20183 0.97235 0.96372 0.94345 1.21819 1.00285 0.94480 1.03066 1.19926 0.96191 0.94396 0.96178 1.21213 1.01711 1.01265 0.91224 1.21326 0.96107 0.94242 0.99796 1.21194 1.02156 0.98640 0.95295 1.18007 0.93818 0.89914 0.94487 1.43516 1.38303 1.20507 1.28734 1.21485 0.78867 0.90080 0.79623 1.90722 1.65925 1.41715 1.45877 1.21696 0.99365 0.94387 1.00979 1.21257 0.97558 0.97796 0.96887 1.21443 0.97556 0.96200 0.98069 1.19057 0.93895 0.95368 0.93558 1.21732 1.23564 1.01071 1.11660 0.91493 1.26105 0.98330 1.00367 0.95659 1.70124 1.37745 1.33489 1.16558 0.85431 0.78424 0.79016 0.77749 1.18882 1.21110 1.18852 1.21055 0.99664 0.98438 0.97902 0.91383 0.93253 0.91042 0.92472 0.94303 0.91254 0.90948 0.83894 0.82570 0.83190 0.73152 0.85706 0.85862 0.93888 0.93822 0.91892 0.91956 0.99788 0.99770 0.92843 0.87972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 9.01 71.98 0.65 -1.30 16 2 C -0.06 -1.21 3.09 -11.54 -0.04 -1.24 16 3 C -0.14 -2.33 9.01 71.98 0.65 -1.68 16 4 C -0.07 -1.44 4.78 -19.88 -0.10 -1.54 16 5 C -0.14 -2.24 8.71 22.29 0.19 -2.05 16 6 C -0.10 -1.39 10.04 22.25 0.22 -1.17 16 7 C -0.15 -2.53 9.96 22.39 0.22 -2.31 16 8 C 0.13 3.01 6.28 38.15 0.24 3.25 16 9 N -0.66 -13.47 5.34 -303.50 -1.62 -15.09 16 10 C 0.51 14.09 7.57 87.66 0.66 14.75 16 11 O -0.56 -21.39 13.67 -3.05 -0.04 -21.43 16 12 C -0.12 -3.00 5.70 29.85 0.17 -2.83 16 13 C -0.10 -3.48 4.50 30.59 0.14 -3.35 16 14 C -0.10 -3.87 5.15 30.59 0.16 -3.71 16 15 C 0.02 1.01 4.97 29.85 0.15 1.16 16 16 C -0.54 -31.58 9.11 25.60 0.23 -31.34 16 17 H 0.07 3.63 7.74 -2.91 -0.02 3.61 16 18 C -0.01 -0.44 5.46 84.65 0.46 0.02 16 19 N -0.94 -59.54 13.29 21.45 0.28 -59.26 16 20 Si 0.97 44.96 29.54 68.60 2.03 46.98 16 21 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 22 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 23 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 24 C -0.15 -4.06 8.29 22.39 0.19 -3.87 16 25 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 26 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.07 0.81 7.39 -2.39 -0.02 0.79 16 28 H 0.06 1.31 7.87 -2.39 -0.02 1.29 16 29 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.07 0.96 7.38 -2.39 -0.02 0.94 16 32 H 0.14 1.64 7.09 -2.91 -0.02 1.62 16 33 H 0.16 1.22 8.06 -2.91 -0.02 1.20 16 34 H 0.15 1.60 8.06 -2.91 -0.02 1.58 16 35 H 0.43 5.00 8.82 -92.71 -0.82 4.18 16 36 H 0.12 2.28 8.14 -2.38 -0.02 2.26 16 37 H 0.12 2.32 8.14 -2.39 -0.02 2.30 16 38 H 0.04 1.70 8.10 -2.39 -0.02 1.68 16 39 H 0.04 1.73 8.10 -2.39 -0.02 1.71 16 40 H 0.06 2.37 8.14 -2.38 -0.02 2.35 16 41 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 42 H -0.02 -0.99 8.14 -2.38 -0.02 -1.01 16 43 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 44 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 45 H 0.10 3.36 6.29 -2.91 -0.02 3.34 16 Total: -1.00 -77.78 369.41 4.99 -72.79 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: 0.14 Total: 13.22 kcal Atomic # 6 Polarization: -41.41 SS G_CDS: 4.20 Total: -37.20 kcal Atomic # 7 Polarization: -73.01 SS G_CDS: -1.34 Total: -74.35 kcal Atomic # 8 Polarization: -21.39 SS G_CDS: -0.04 Total: -21.43 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.98 kcal Total: -77.78 4.99 -72.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588147324.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.645 kcal (2) G-P(sol) polarization free energy of solvation -77.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds