Wall clock time and date at job start Tue Mar 31 2020 06:29:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47332 * 2 1 4 4 C 1.50702 * 109.47204 * 240.00096 * 2 1 3 5 5 C 1.38283 * 119.93025 * 59.71792 * 4 2 1 6 6 C 1.38110 * 120.07043 * 179.76685 * 5 4 2 7 7 C 1.38871 * 119.92998 * 0.51650 * 6 5 4 8 8 N 1.39928 * 120.07278 * 179.72191 * 7 6 5 9 9 C 1.34771 * 119.99792 * 213.30769 * 8 7 6 10 10 O 1.21282 * 120.00522 * 5.27702 * 9 8 7 11 11 C 1.50703 * 119.99924 * 185.27083 * 9 8 7 12 12 C 1.52998 * 109.47574 * 180.02562 * 11 9 8 13 13 C 1.52998 * 109.47476 * 179.97438 * 12 11 9 14 14 C 1.52998 * 109.47102 * 179.97438 * 13 12 11 15 15 C 1.50700 * 109.46844 * 180.02562 * 14 13 12 16 16 H 1.08000 * 120.00157 * 0.02562 * 15 14 13 17 17 C 1.37875 * 119.99697 * 180.02562 * 15 14 13 18 18 N 1.31519 * 120.00285 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00177 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47446 * 89.99733 * 19 17 15 21 21 H 1.48494 * 109.47313 * 210.00243 * 19 17 15 22 22 H 1.48508 * 109.46805 * 330.00077 * 19 17 15 23 23 C 1.38876 * 119.85841 * 359.73909 * 7 6 5 24 24 C 1.38108 * 119.92882 * 0.02562 * 23 7 6 25 25 H 1.08997 * 109.47207 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46915 * 299.99805 * 1 2 3 27 27 H 1.09000 * 109.47459 * 60.00359 * 1 2 3 28 28 H 1.09006 * 109.47347 * 120.00079 * 2 1 3 29 29 H 1.09001 * 109.47584 * 180.02562 * 3 2 1 30 30 H 1.09006 * 109.46969 * 300.00310 * 3 2 1 31 31 H 1.08996 * 109.46932 * 59.99632 * 3 2 1 32 32 H 1.07998 * 119.96347 * 0.03187 * 5 4 2 33 33 H 1.07999 * 120.03600 * 180.25987 * 6 5 4 34 34 H 0.96995 * 119.99651 * 33.30720 * 8 7 6 35 35 H 1.09000 * 109.47298 * 300.00484 * 11 9 8 36 36 H 1.09004 * 109.47020 * 60.00280 * 11 9 8 37 37 H 1.09000 * 109.47065 * 300.00458 * 12 11 9 38 38 H 1.09004 * 109.46856 * 60.00011 * 12 11 9 39 39 H 1.09000 * 109.47366 * 300.00296 * 13 12 11 40 40 H 1.09000 * 109.46607 * 60.00337 * 13 12 11 41 41 H 1.09000 * 109.47273 * 300.00379 * 14 13 12 42 42 H 1.09004 * 109.47022 * 60.00161 * 14 13 12 43 43 H 0.96995 * 119.99801 * 179.97438 * 18 17 15 44 44 H 1.08001 * 120.03404 * 179.97438 * 23 7 6 45 45 H 1.08001 * 119.96745 * 179.97438 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 1.6926 -0.2401 -2.4857 6 6 2.1553 -0.8861 -3.6153 7 6 2.9537 -2.0153 -3.4897 8 7 3.4194 -2.6755 -4.6322 9 6 3.5804 -4.0135 -4.6186 10 8 3.2322 -4.6565 -3.6511 11 6 4.1931 -4.7107 -5.8059 12 6 4.2603 -6.2151 -5.5353 13 6 4.8817 -6.9230 -6.7409 14 6 4.9494 -8.4273 -6.4699 15 6 5.5621 -9.1244 -7.6572 16 1 5.8725 -8.5518 -8.5187 17 6 5.7263 -10.4933 -7.6436 18 7 5.3479 -11.1907 -6.5948 19 14 6.4864 -11.3575 -9.1150 20 1 7.9595 -11.4283 -8.9410 21 1 5.9339 -12.7317 -9.2217 22 1 6.1700 -10.5993 -10.3521 23 6 3.2888 -2.4882 -2.2276 24 6 2.8269 -1.8349 -1.1019 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9563 0.8899 32 1 1.0682 0.6358 -2.5828 33 1 1.8930 -0.5158 -4.5954 34 1 3.6263 -2.1701 -5.4338 35 1 3.5820 -4.5279 -6.6898 36 1 5.1991 -4.3261 -5.9738 37 1 4.8711 -6.3983 -4.6513 38 1 3.2541 -6.5994 -5.3676 39 1 4.2705 -6.7398 -7.6247 40 1 5.8878 -6.5388 -6.9089 41 1 5.5609 -8.6101 -5.5863 42 1 3.9435 -8.8118 -6.3016 43 1 5.4631 -12.1537 -6.5854 44 1 3.9093 -3.3664 -2.1266 45 1 3.0867 -2.2023 -0.1202 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588148067.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:14 Heat of formation + Delta-G solvation = -51.147378 kcal Electronic energy + Delta-G solvation = -21521.852354 eV Core-core repulsion = 18309.623050 eV Total energy + Delta-G solvation = -3212.229304 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.67161 -39.09533 -36.19182 -34.89784 -34.01319 -32.62823 -31.12575 -30.11430 -28.62490 -27.46248 -25.73037 -23.83458 -22.87096 -22.16308 -20.61962 -20.00696 -19.96140 -17.86902 -16.96053 -16.21380 -16.06560 -15.91454 -15.11858 -14.64969 -14.42742 -14.26385 -13.98757 -13.90987 -13.79221 -13.37445 -13.09826 -12.82808 -12.61542 -12.49605 -12.18352 -11.74003 -11.67018 -11.60470 -11.47442 -11.13714 -10.99251 -10.96075 -10.56267 -10.51332 -10.43301 -10.34371 -9.84639 -9.62396 -9.24349 -9.06977 -8.99141 -8.30663 -8.14220 -5.95384 -3.98004 1.09822 1.25919 2.59255 2.96264 3.33922 3.39992 3.43095 3.63924 4.41466 4.47953 4.48935 4.68134 4.81967 4.87171 4.88816 5.14967 5.20476 5.23843 5.28864 5.30044 5.33820 5.39949 5.46398 5.49513 5.58970 5.64558 5.78135 5.87549 5.89569 5.91712 6.10185 6.14762 6.18952 6.27341 6.37432 6.48750 6.52179 6.81257 6.89735 6.99261 7.18240 7.27965 7.73649 7.89276 8.05663 8.09378 8.47445 9.09667 9.65663 11.15899 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.050904 B = 0.002036 C = 0.001993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 549.924736 B =13746.825964 C =14043.319515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.055 4.055 3 C -0.143 4.143 4 C -0.098 4.098 5 C -0.096 4.096 6 C -0.148 4.148 7 C 0.148 3.852 8 N -0.682 5.682 9 C 0.511 3.489 10 O -0.514 6.514 11 C -0.138 4.138 12 C -0.104 4.104 13 C -0.110 4.110 14 C 0.019 3.981 15 C -0.521 4.521 16 H 0.054 0.946 17 C 0.055 3.945 18 N -0.895 5.895 19 Si 0.892 3.108 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.274 1.274 23 C -0.119 4.119 24 C -0.097 4.097 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.076 0.924 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.122 0.878 33 H 0.123 0.877 34 H 0.410 0.590 35 H 0.093 0.907 36 H 0.095 0.905 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.047 0.953 40 H 0.047 0.953 41 H 0.016 0.984 42 H 0.016 0.984 43 H 0.260 0.740 44 H 0.135 0.865 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.316 27.792 10.084 30.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.074 4.074 3 C -0.201 4.201 4 C -0.099 4.099 5 C -0.115 4.115 6 C -0.168 4.168 7 C 0.054 3.946 8 N -0.328 5.328 9 C 0.300 3.700 10 O -0.388 6.388 11 C -0.177 4.177 12 C -0.142 4.142 13 C -0.148 4.148 14 C -0.018 4.018 15 C -0.559 4.559 16 H 0.073 0.927 17 C -0.146 4.146 18 N -0.534 5.534 19 Si 0.720 3.280 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.199 1.199 23 C -0.139 4.139 24 C -0.116 4.116 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.095 0.905 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.140 0.860 33 H 0.141 0.859 34 H 0.246 0.754 35 H 0.112 0.888 36 H 0.113 0.887 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.034 0.966 42 H 0.034 0.966 43 H 0.070 0.930 44 H 0.153 0.847 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -7.539 27.070 10.802 30.105 hybrid contribution 0.512 -0.336 -1.278 1.417 sum -7.028 26.734 9.524 29.238 Atomic orbital electron populations 1.21862 0.94431 1.02130 1.01750 1.20092 0.95881 0.95916 0.95462 1.21858 1.01242 0.95193 1.01772 1.19808 0.99143 0.96304 0.94617 1.20698 0.99687 0.99687 0.91402 1.20858 0.99267 0.97476 0.99240 1.17802 0.96076 0.93710 0.87018 1.43764 1.66507 1.08079 1.14447 1.21337 0.77613 0.80994 0.90068 1.90723 1.47523 1.64842 1.35663 1.21827 1.01863 0.98549 0.95501 1.21473 1.02367 0.90210 1.00156 1.21651 0.98766 0.99067 0.95311 1.19099 0.97208 0.88568 0.96888 1.21279 1.40287 0.92099 1.02227 0.92745 1.25048 0.95798 0.97734 0.96031 1.69976 1.47695 1.06738 1.29019 0.86605 0.79389 0.78931 0.83115 1.20710 1.21252 1.19934 1.21188 1.01029 1.00922 0.90802 1.20954 0.97485 0.94778 0.98366 0.92441 0.92504 0.92515 0.90531 0.92536 0.92529 0.92512 0.85990 0.85862 0.75447 0.88831 0.88708 0.91702 0.91698 0.93415 0.93421 0.96580 0.96563 0.93040 0.84702 0.85890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.95 9.00 37.15 0.33 -0.61 16 2 C -0.06 -0.39 3.09 -91.77 -0.28 -0.68 16 3 C -0.14 -0.86 9.01 37.16 0.33 -0.53 16 4 C -0.10 -0.91 4.78 -104.59 -0.50 -1.41 16 5 C -0.10 -0.85 8.70 -39.61 -0.34 -1.19 16 6 C -0.15 -1.40 9.96 -39.39 -0.39 -1.79 16 7 C 0.15 1.71 6.28 -83.69 -0.53 1.19 16 8 N -0.68 -7.22 5.34 -9.86 -0.05 -7.28 16 9 C 0.51 7.01 7.57 -10.99 -0.08 6.93 16 10 O -0.51 -9.13 13.67 5.56 0.08 -9.05 16 11 C -0.14 -1.75 5.70 -27.88 -0.16 -1.91 16 12 C -0.10 -1.82 4.50 -26.73 -0.12 -1.95 16 13 C -0.11 -2.25 5.15 -26.73 -0.14 -2.39 16 14 C 0.02 0.51 4.97 -27.88 -0.14 0.38 16 15 C -0.52 -15.01 9.11 -34.44 -0.31 -15.32 16 16 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 17 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 18 N -0.89 -27.55 13.29 55.43 0.74 -26.81 16 19 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 20 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 22 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 23 C -0.12 -1.51 8.66 -39.39 -0.34 -1.85 16 24 C -0.10 -1.04 9.66 -39.61 -0.38 -1.42 16 25 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.06 0.35 7.37 -51.93 -0.38 -0.03 16 28 H 0.08 0.53 7.87 -51.93 -0.41 0.12 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.32 7.40 -51.93 -0.38 -0.06 16 31 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 32 H 0.12 0.83 7.09 -52.49 -0.37 0.46 16 33 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 34 H 0.41 2.87 8.82 -40.82 -0.36 2.51 16 35 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 36 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 38 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 39 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 44 H 0.14 1.93 6.41 -52.49 -0.34 1.59 16 45 H 0.12 1.12 7.94 -52.49 -0.42 0.71 16 LS Contribution 369.40 15.07 5.57 5.57 Total: -1.00 -33.73 369.40 -9.54 -43.27 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: -7.69 Total: -1.56 kcal Atomic # 6 Polarization: -17.90 SS G_CDS: -3.15 Total: -21.05 kcal Atomic # 7 Polarization: -34.77 SS G_CDS: 0.68 Total: -34.09 kcal Atomic # 8 Polarization: -9.13 SS G_CDS: 0.08 Total: -9.05 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.73 -9.54 -43.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588148067.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.873 kcal (2) G-P(sol) polarization free energy of solvation -33.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds