Wall clock time and date at job start Tue Mar 31 2020 06:29:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47332 * 2 1 4 4 C 1.50702 * 109.47204 * 240.00096 * 2 1 3 5 5 C 1.38283 * 119.93025 * 59.71792 * 4 2 1 6 6 C 1.38110 * 120.07043 * 179.76685 * 5 4 2 7 7 C 1.38871 * 119.92998 * 0.51650 * 6 5 4 8 8 N 1.39928 * 120.07278 * 179.72191 * 7 6 5 9 9 C 1.34771 * 119.99792 * 213.30769 * 8 7 6 10 10 O 1.21282 * 120.00522 * 5.27702 * 9 8 7 11 11 C 1.50703 * 119.99924 * 185.27083 * 9 8 7 12 12 C 1.52998 * 109.47574 * 180.02562 * 11 9 8 13 13 C 1.52998 * 109.47476 * 179.97438 * 12 11 9 14 14 C 1.52998 * 109.47102 * 179.97438 * 13 12 11 15 15 C 1.50700 * 109.46844 * 180.02562 * 14 13 12 16 16 H 1.08000 * 120.00157 * 0.02562 * 15 14 13 17 17 C 1.37875 * 119.99697 * 180.02562 * 15 14 13 18 18 N 1.31519 * 120.00285 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00177 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47446 * 89.99733 * 19 17 15 21 21 H 1.48494 * 109.47313 * 210.00243 * 19 17 15 22 22 H 1.48508 * 109.46805 * 330.00077 * 19 17 15 23 23 C 1.38876 * 119.85841 * 359.73909 * 7 6 5 24 24 C 1.38108 * 119.92882 * 0.02562 * 23 7 6 25 25 H 1.08997 * 109.47207 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46915 * 299.99805 * 1 2 3 27 27 H 1.09000 * 109.47459 * 60.00359 * 1 2 3 28 28 H 1.09006 * 109.47347 * 120.00079 * 2 1 3 29 29 H 1.09001 * 109.47584 * 180.02562 * 3 2 1 30 30 H 1.09006 * 109.46969 * 300.00310 * 3 2 1 31 31 H 1.08996 * 109.46932 * 59.99632 * 3 2 1 32 32 H 1.07998 * 119.96347 * 0.03187 * 5 4 2 33 33 H 1.07999 * 120.03600 * 180.25987 * 6 5 4 34 34 H 0.96995 * 119.99651 * 33.30720 * 8 7 6 35 35 H 1.09000 * 109.47298 * 300.00484 * 11 9 8 36 36 H 1.09004 * 109.47020 * 60.00280 * 11 9 8 37 37 H 1.09000 * 109.47065 * 300.00458 * 12 11 9 38 38 H 1.09004 * 109.46856 * 60.00011 * 12 11 9 39 39 H 1.09000 * 109.47366 * 300.00296 * 13 12 11 40 40 H 1.09000 * 109.46607 * 60.00337 * 13 12 11 41 41 H 1.09000 * 109.47273 * 300.00379 * 14 13 12 42 42 H 1.09004 * 109.47022 * 60.00161 * 14 13 12 43 43 H 0.96995 * 119.99801 * 179.97438 * 18 17 15 44 44 H 1.08001 * 120.03404 * 179.97438 * 23 7 6 45 45 H 1.08001 * 119.96745 * 179.97438 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 1.6926 -0.2401 -2.4857 6 6 2.1553 -0.8861 -3.6153 7 6 2.9537 -2.0153 -3.4897 8 7 3.4194 -2.6755 -4.6322 9 6 3.5804 -4.0135 -4.6186 10 8 3.2322 -4.6565 -3.6511 11 6 4.1931 -4.7107 -5.8059 12 6 4.2603 -6.2151 -5.5353 13 6 4.8817 -6.9230 -6.7409 14 6 4.9494 -8.4273 -6.4699 15 6 5.5621 -9.1244 -7.6572 16 1 5.8725 -8.5518 -8.5187 17 6 5.7263 -10.4933 -7.6436 18 7 5.3479 -11.1907 -6.5948 19 14 6.4864 -11.3575 -9.1150 20 1 7.9595 -11.4283 -8.9410 21 1 5.9339 -12.7317 -9.2217 22 1 6.1700 -10.5993 -10.3521 23 6 3.2888 -2.4882 -2.2276 24 6 2.8269 -1.8349 -1.1019 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9563 0.8899 32 1 1.0682 0.6358 -2.5828 33 1 1.8930 -0.5158 -4.5954 34 1 3.6263 -2.1701 -5.4338 35 1 3.5820 -4.5279 -6.6898 36 1 5.1991 -4.3261 -5.9738 37 1 4.8711 -6.3983 -4.6513 38 1 3.2541 -6.5994 -5.3676 39 1 4.2705 -6.7398 -7.6247 40 1 5.8878 -6.5388 -6.9089 41 1 5.5609 -8.6101 -5.5863 42 1 3.9435 -8.8118 -6.3016 43 1 5.4631 -12.1537 -6.5854 44 1 3.9093 -3.3664 -2.1266 45 1 3.0867 -2.2023 -0.1202 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588148067.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:13 Heat of formation + Delta-G solvation = -70.092483 kcal Electronic energy + Delta-G solvation = -21522.673876 eV Core-core repulsion = 18309.623050 eV Total energy + Delta-G solvation = -3213.050826 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.61163 -39.97067 -37.08652 -36.50980 -34.87404 -34.57266 -31.90496 -31.67884 -29.66095 -27.93847 -27.42765 -24.96466 -23.94926 -23.31764 -21.86947 -21.41176 -20.78002 -18.76879 -18.39732 -17.96145 -17.03352 -16.80698 -16.51778 -16.06423 -15.53527 -15.38664 -14.90652 -14.75898 -14.55155 -14.45058 -14.22269 -13.82365 -13.75213 -13.59466 -13.41624 -13.26093 -12.95757 -12.82180 -12.36754 -12.34285 -12.17360 -12.15189 -12.04599 -11.78575 -11.54184 -11.39751 -11.35769 -11.23744 -11.12244 -10.75778 -10.55404 -9.86935 -8.97151 -8.19068 -6.31319 0.27978 0.46269 1.40103 1.42428 1.53482 1.58210 2.05712 2.41681 2.84686 3.13597 3.68920 3.79042 3.88589 4.00015 4.08531 4.12980 4.20585 4.36133 4.47099 4.51055 4.59489 4.63076 4.67126 4.74832 4.82072 4.85111 4.86260 4.98568 5.03268 5.07436 5.16617 5.17358 5.31034 5.33469 5.36186 5.41191 5.42135 5.43242 5.54720 5.57801 5.75657 5.77546 5.87736 6.09473 6.24751 6.43375 6.87312 7.14322 7.38341 8.93129 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.050904 B = 0.002036 C = 0.001993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 549.924736 B =13746.825964 C =14043.319515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.056 4.056 3 C -0.140 4.140 4 C -0.095 4.095 5 C -0.096 4.096 6 C -0.141 4.141 7 C 0.125 3.875 8 N -0.663 5.663 9 C 0.510 3.490 10 O -0.566 6.566 11 C -0.125 4.125 12 C -0.097 4.097 13 C -0.096 4.096 14 C 0.017 3.983 15 C -0.542 4.542 16 H 0.067 0.933 17 C -0.008 4.008 18 N -0.938 5.938 19 Si 0.970 3.030 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.259 1.259 23 C -0.145 4.145 24 C -0.112 4.112 25 H 0.043 0.957 26 H 0.069 0.931 27 H 0.063 0.937 28 H 0.075 0.925 29 H 0.049 0.951 30 H 0.063 0.937 31 H 0.068 0.932 32 H 0.150 0.850 33 H 0.152 0.848 34 H 0.429 0.571 35 H 0.125 0.875 36 H 0.124 0.876 37 H 0.043 0.957 38 H 0.043 0.957 39 H 0.062 0.938 40 H 0.062 0.938 41 H -0.016 1.016 42 H -0.016 1.016 43 H 0.263 0.737 44 H 0.106 0.894 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.539 30.677 8.131 32.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.074 4.074 3 C -0.197 4.197 4 C -0.096 4.096 5 C -0.114 4.114 6 C -0.161 4.161 7 C 0.031 3.969 8 N -0.310 5.310 9 C 0.300 3.700 10 O -0.443 6.443 11 C -0.164 4.164 12 C -0.135 4.135 13 C -0.133 4.133 14 C -0.020 4.020 15 C -0.579 4.579 16 H 0.085 0.915 17 C -0.205 4.205 18 N -0.578 5.578 19 Si 0.794 3.206 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.183 1.183 23 C -0.165 4.165 24 C -0.130 4.130 25 H 0.063 0.937 26 H 0.088 0.912 27 H 0.082 0.918 28 H 0.093 0.907 29 H 0.069 0.931 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.167 0.833 33 H 0.170 0.830 34 H 0.268 0.732 35 H 0.143 0.857 36 H 0.142 0.858 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.002 0.998 42 H 0.003 0.997 43 H 0.071 0.929 44 H 0.125 0.875 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -7.756 30.019 8.823 32.235 hybrid contribution 0.541 -1.192 -0.571 1.428 sum -7.215 28.827 8.251 30.841 Atomic orbital electron populations 1.21854 0.93726 1.01614 1.02811 1.20146 0.96377 0.96519 0.94378 1.21835 1.00860 0.94265 1.02776 1.20098 0.98015 0.95498 0.96010 1.21069 0.99309 1.00192 0.90860 1.21170 0.97860 0.96173 1.00891 1.17987 0.97404 0.94808 0.86656 1.43502 1.65395 1.07060 1.15033 1.21476 0.77103 0.81894 0.89536 1.90718 1.49958 1.66162 1.37488 1.21695 1.04182 0.94514 0.96032 1.21258 1.00314 0.93848 0.98090 1.21446 1.00226 0.94757 0.96881 1.19067 0.94502 0.93083 0.95310 1.21761 1.40285 0.92855 1.03045 0.91490 1.26111 0.96234 0.98798 0.99384 1.70136 1.49003 1.07157 1.31538 0.85371 0.78515 0.77467 0.79215 1.19727 1.20975 1.18276 1.21137 1.02121 1.00807 0.92452 1.21098 0.98209 0.95605 0.98123 0.93738 0.91163 0.91776 0.90685 0.93138 0.91763 0.91297 0.83255 0.83001 0.73151 0.85721 0.85824 0.93839 0.93824 0.91896 0.91946 0.99761 0.99728 0.92876 0.87547 0.85483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 9.00 71.98 0.65 -0.95 16 2 C -0.06 -0.71 3.09 -11.54 -0.04 -0.75 16 3 C -0.14 -1.37 9.01 71.98 0.65 -0.72 16 4 C -0.10 -1.66 4.78 -19.84 -0.09 -1.76 16 5 C -0.10 -1.46 8.70 22.25 0.19 -1.26 16 6 C -0.14 -2.33 9.96 22.39 0.22 -2.11 16 7 C 0.13 2.82 6.28 38.15 0.24 3.06 16 8 N -0.66 -13.16 5.34 -303.51 -1.62 -14.79 16 9 C 0.51 13.88 7.57 87.66 0.66 14.55 16 10 O -0.57 -21.18 13.67 -3.03 -0.04 -21.22 16 11 C -0.12 -2.96 5.70 29.85 0.17 -2.79 16 12 C -0.10 -3.46 4.50 30.59 0.14 -3.32 16 13 C -0.10 -3.87 5.15 30.59 0.16 -3.71 16 14 C 0.02 0.96 4.97 29.85 0.15 1.11 16 15 C -0.54 -31.48 9.11 25.60 0.23 -31.25 16 16 H 0.07 3.64 7.74 -2.91 -0.02 3.61 16 17 C -0.01 -0.48 5.46 84.65 0.46 -0.02 16 18 N -0.94 -59.34 13.29 21.45 0.28 -59.06 16 19 Si 0.97 44.95 29.54 68.60 2.03 46.97 16 20 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 21 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 22 H -0.26 -11.25 7.11 99.48 0.71 -10.55 16 23 C -0.14 -3.85 8.66 22.39 0.19 -3.65 16 24 C -0.11 -2.47 9.66 22.25 0.21 -2.26 16 25 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 26 H 0.07 0.61 8.14 -2.38 -0.02 0.59 16 27 H 0.06 0.62 7.37 -2.39 -0.02 0.60 16 28 H 0.07 0.98 7.87 -2.38 -0.02 0.96 16 29 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.06 0.53 7.40 -2.38 -0.02 0.52 16 31 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.15 1.45 7.09 -2.91 -0.02 1.43 16 33 H 0.15 1.59 8.06 -2.91 -0.02 1.57 16 34 H 0.43 4.82 8.82 -92.71 -0.82 4.00 16 35 H 0.12 2.24 8.14 -2.39 -0.02 2.22 16 36 H 0.12 2.28 8.14 -2.39 -0.02 2.26 16 37 H 0.04 1.71 8.10 -2.39 -0.02 1.69 16 38 H 0.04 1.72 8.10 -2.39 -0.02 1.70 16 39 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 40 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 41 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 42 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 43 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 44 H 0.11 3.38 6.41 -2.91 -0.02 3.36 16 45 H 0.13 2.51 7.94 -2.91 -0.02 2.49 16 Total: -1.00 -77.00 369.40 4.99 -72.01 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: 0.14 Total: 11.92 kcal Atomic # 6 Polarization: -40.05 SS G_CDS: 4.20 Total: -35.84 kcal Atomic # 7 Polarization: -72.51 SS G_CDS: -1.34 Total: -73.84 kcal Atomic # 8 Polarization: -21.18 SS G_CDS: -0.04 Total: -21.22 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.97 kcal Total: -77.00 4.99 -72.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588148067.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.920 kcal (2) G-P(sol) polarization free energy of solvation -77.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds