Wall clock time and date at job start Tue Mar 31 2020 06:18:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50698 * 109.47166 * 2 1 4 4 C 1.38260 * 119.99559 * 264.99427 * 3 2 1 5 5 C 1.38212 * 119.99650 * 179.71963 * 4 3 2 6 6 C 1.38255 * 120.00300 * 0.28729 * 5 4 3 7 7 C 1.38216 * 119.99744 * 359.97134 * 6 5 4 8 8 C 1.38208 * 120.00333 * 85.19279 * 3 2 1 9 9 C 1.50698 * 120.00186 * 0.03695 * 8 3 2 10 10 N 1.46502 * 109.46972 * 80.16985 * 9 8 3 11 11 C 1.34781 * 119.99750 * 179.97438 * 10 9 8 12 12 O 1.21275 * 120.00131 * 0.02562 * 11 10 9 13 13 C 1.50707 * 119.99726 * 180.02562 * 11 10 9 14 14 C 1.52994 * 109.47266 * 180.02562 * 13 11 10 15 15 C 1.52993 * 109.47414 * 180.02562 * 14 13 11 16 16 C 1.52994 * 109.47414 * 179.97438 * 15 14 13 17 17 C 1.50697 * 109.47387 * 179.97438 * 16 15 14 18 18 H 1.07995 * 119.99997 * 359.97438 * 17 16 15 19 19 C 1.37876 * 120.00388 * 179.97438 * 17 16 15 20 20 N 1.31526 * 119.99762 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 120.00460 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47083 * 59.99764 * 21 19 17 23 23 H 1.48495 * 109.47278 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.46638 * 299.99710 * 21 19 17 25 25 H 1.09000 * 109.47225 * 60.00352 * 1 2 3 26 26 H 1.09003 * 109.47047 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47000 * 300.00106 * 1 2 3 28 28 H 1.09005 * 109.47450 * 239.99707 * 2 1 3 29 29 H 1.09000 * 109.47225 * 119.99648 * 2 1 3 30 30 H 1.08002 * 120.00476 * 0.02562 * 4 3 2 31 31 H 1.07999 * 119.99941 * 180.25946 * 5 4 3 32 32 H 1.08005 * 120.00230 * 179.97438 * 6 5 4 33 33 H 1.08002 * 119.99715 * 179.97438 * 7 6 5 34 34 H 1.09001 * 109.47640 * 200.17138 * 9 8 3 35 35 H 1.09000 * 109.47091 * 320.17597 * 9 8 3 36 36 H 0.96996 * 119.99986 * 0.02562 * 10 9 8 37 37 H 1.09001 * 109.46711 * 300.00206 * 13 11 10 38 38 H 1.09000 * 109.47088 * 60.00095 * 13 11 10 39 39 H 1.09006 * 109.46538 * 300.00007 * 14 13 11 40 40 H 1.09001 * 109.47539 * 59.99103 * 14 13 11 41 41 H 1.09004 * 109.46918 * 299.99965 * 15 14 13 42 42 H 1.08995 * 109.47272 * 59.99074 * 15 14 13 43 43 H 1.09004 * 109.47050 * 299.99884 * 16 15 14 44 44 H 1.09000 * 109.47298 * 59.99625 * 16 15 14 45 45 H 0.96999 * 119.99648 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3612 2.0376 -1.1929 5 6 2.8164 3.3426 -1.1934 6 6 2.9485 4.0292 -0.0007 7 6 2.6248 3.4108 1.1922 8 6 2.1681 2.1058 1.1927 9 6 1.8147 1.4317 2.4933 10 7 2.9203 0.5660 2.9109 11 6 2.8273 -0.1417 4.0541 12 8 1.8281 -0.0623 4.7369 13 6 3.9649 -1.0318 4.4840 14 6 3.6061 -1.7163 5.8044 15 6 4.7613 -2.6194 6.2411 16 6 4.4027 -3.3034 7.5618 17 6 5.5403 -4.1934 7.9917 18 1 6.4299 -4.2644 7.3835 19 6 5.4454 -4.9171 9.1614 20 7 4.3623 -4.8302 9.9024 21 14 6.8558 -6.0198 9.6947 22 1 8.0818 -5.2020 9.8772 23 1 6.5082 -6.6828 10.9771 24 1 7.0988 -7.0507 8.6538 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.2578 1.5015 -2.1247 31 1 3.0694 3.8259 -2.1255 32 1 3.3047 5.0489 -0.0011 33 1 2.7284 3.9470 2.1240 34 1 1.6365 2.1879 3.2579 35 1 0.9145 0.8319 2.3588 36 1 3.7196 0.5028 2.3650 37 1 4.1432 -1.7882 3.7197 38 1 4.8650 -0.4317 4.6182 39 1 3.4276 -0.9600 6.5688 40 1 2.7061 -2.3163 5.6698 41 1 4.9403 -3.3756 5.4767 42 1 5.6610 -2.0190 6.3758 43 1 4.2240 -2.5469 8.3260 44 1 3.5029 -3.9037 7.4275 45 1 4.2954 -5.3396 10.7252 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588158808.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:37 Heat of formation + Delta-G solvation = -52.884678 kcal Electronic energy + Delta-G solvation = -21758.015985 eV Core-core repulsion = 18545.711345 eV Total energy + Delta-G solvation = -3212.304639 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.37209 -39.26931 -35.40679 -34.78377 -34.23461 -32.61630 -31.67177 -29.90306 -29.55606 -26.80414 -25.18316 -24.10444 -22.48908 -22.00730 -20.87096 -20.23340 -19.92640 -17.22227 -16.54923 -16.40770 -16.17194 -15.83426 -15.51329 -15.25591 -14.43318 -14.18501 -14.13695 -13.88227 -13.65278 -13.42469 -13.24054 -12.87585 -12.57630 -12.38866 -12.14348 -12.01696 -11.66299 -11.61745 -11.55006 -11.16347 -11.05023 -10.94512 -10.51857 -10.49405 -10.37753 -9.89135 -9.58060 -9.27929 -9.16269 -9.14522 -9.02319 -8.92350 -8.27911 -5.92867 -3.95377 0.87084 1.00564 2.76004 3.09145 3.36866 3.41123 3.43409 3.55877 4.28908 4.38005 4.50833 4.52396 4.63292 4.81175 4.90497 4.96782 5.05264 5.13969 5.19676 5.31757 5.35621 5.41338 5.43047 5.47640 5.54437 5.64179 5.65719 5.76945 5.90050 5.94396 6.10065 6.12695 6.17413 6.28216 6.31388 6.34776 6.58201 6.61107 6.87464 7.05512 7.23130 7.46660 7.76447 7.93010 8.08728 8.29170 8.50444 9.12169 9.68003 11.18411 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.031543 B = 0.002214 C = 0.002189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.461921 B =12646.340567 C =12785.390970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.093 4.093 3 C -0.062 4.062 4 C -0.121 4.121 5 C -0.111 4.111 6 C -0.128 4.128 7 C -0.098 4.098 8 C -0.105 4.105 9 C 0.158 3.842 10 N -0.734 5.734 11 C 0.511 3.489 12 O -0.535 6.535 13 C -0.138 4.138 14 C -0.103 4.103 15 C -0.110 4.110 16 C 0.020 3.980 17 C -0.520 4.520 18 H 0.054 0.946 19 C 0.055 3.945 20 N -0.895 5.895 21 Si 0.892 3.108 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.277 1.277 25 H 0.055 0.945 26 H 0.060 0.940 27 H 0.058 0.942 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.122 0.878 31 H 0.122 0.878 32 H 0.123 0.877 33 H 0.124 0.876 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.400 0.600 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.046 0.954 42 H 0.046 0.954 43 H 0.016 0.984 44 H 0.016 0.984 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.442 17.071 -25.544 31.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.131 4.131 3 C -0.062 4.062 4 C -0.139 4.139 5 C -0.130 4.130 6 C -0.146 4.146 7 C -0.116 4.116 8 C -0.106 4.106 9 C 0.035 3.965 10 N -0.387 5.387 11 C 0.299 3.701 12 O -0.411 6.411 13 C -0.178 4.178 14 C -0.141 4.141 15 C -0.148 4.148 16 C -0.017 4.017 17 C -0.559 4.559 18 H 0.072 0.928 19 C -0.146 4.146 20 N -0.535 5.535 21 Si 0.720 3.280 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.203 1.203 25 H 0.074 0.926 26 H 0.079 0.921 27 H 0.077 0.923 28 H 0.091 0.909 29 H 0.097 0.903 30 H 0.140 0.860 31 H 0.140 0.860 32 H 0.141 0.859 33 H 0.142 0.858 34 H 0.091 0.909 35 H 0.096 0.904 36 H 0.234 0.766 37 H 0.108 0.892 38 H 0.108 0.892 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.034 0.966 44 H 0.034 0.966 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.274 17.053 -24.852 30.598 hybrid contribution 1.169 -0.495 -0.018 1.270 sum -4.105 16.558 -24.870 30.158 Atomic orbital electron populations 1.21751 0.94424 1.02145 1.02146 1.20653 0.96570 0.92435 1.03413 1.19847 0.97603 0.96249 0.92510 1.21059 1.00143 0.95228 0.97494 1.21191 0.98943 0.94662 0.98160 1.21147 1.00823 1.00105 0.92484 1.21126 0.97778 0.94274 0.98449 1.19781 1.01792 0.94764 0.94229 1.20182 0.90538 0.93522 0.92295 1.46173 1.20347 1.46988 1.25228 1.21129 0.89291 0.79886 0.79783 1.90708 1.32352 1.64743 1.53256 1.21796 0.96524 0.98589 1.00922 1.21448 0.99915 0.99003 0.93740 1.21646 0.95881 0.97216 1.00038 1.19093 0.96717 0.95112 0.90806 1.21248 1.02415 1.25672 1.06525 0.92823 1.25049 0.95802 0.97060 0.96702 1.69972 1.27169 1.41960 1.14384 0.86666 0.82699 0.80847 0.77811 1.20303 1.21337 1.20294 0.92604 0.92065 0.92332 0.90909 0.90276 0.85974 0.86036 0.85948 0.85776 0.90944 0.90400 0.76586 0.89176 0.89163 0.91822 0.91808 0.93499 0.93503 0.96594 0.96599 0.93007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.75 37.16 0.36 -0.72 16 2 C -0.09 -0.69 5.40 -27.89 -0.15 -0.84 16 3 C -0.06 -0.49 5.13 -104.63 -0.54 -1.02 16 4 C -0.12 -0.86 9.68 -39.58 -0.38 -1.24 16 5 C -0.11 -0.74 10.05 -39.58 -0.40 -1.14 16 6 C -0.13 -0.88 10.05 -39.58 -0.40 -1.28 16 7 C -0.10 -0.76 9.67 -39.58 -0.38 -1.14 16 8 C -0.11 -0.89 5.25 -104.63 -0.55 -1.44 16 9 C 0.16 1.56 4.95 -5.19 -0.03 1.54 16 10 N -0.73 -7.54 4.89 -61.47 -0.30 -7.84 16 11 C 0.51 7.13 7.83 -10.98 -0.09 7.05 16 12 O -0.53 -9.77 15.98 5.56 0.09 -9.68 16 13 C -0.14 -1.86 5.70 -27.88 -0.16 -2.01 16 14 C -0.10 -1.87 4.50 -26.74 -0.12 -1.99 16 15 C -0.11 -2.30 5.15 -26.74 -0.14 -2.43 16 16 C 0.02 0.53 4.97 -27.89 -0.14 0.39 16 17 C -0.52 -15.13 9.11 -34.44 -0.31 -15.44 16 18 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 19 C 0.05 1.62 5.46 -17.81 -0.10 1.52 16 20 N -0.90 -27.73 13.29 55.43 0.74 -26.99 16 21 Si 0.89 22.06 29.54 -169.99 -5.02 17.04 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.47 6.74 -51.93 -0.35 0.12 16 28 H 0.07 0.46 8.05 -51.93 -0.42 0.04 16 29 H 0.08 0.66 6.59 -51.93 -0.34 0.32 16 30 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 31 H 0.12 0.57 8.06 -52.49 -0.42 0.14 16 32 H 0.12 0.62 8.06 -52.48 -0.42 0.20 16 33 H 0.12 0.85 8.04 -52.49 -0.42 0.43 16 34 H 0.07 0.77 8.00 -51.93 -0.42 0.35 16 35 H 0.08 0.83 5.86 -51.93 -0.30 0.53 16 36 H 0.40 3.23 8.46 -40.82 -0.35 2.88 16 37 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 40 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 41 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 42 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 43 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 370.98 15.07 5.59 5.59 Total: -1.00 -33.77 370.98 -10.05 -43.82 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: -7.63 Total: -1.74 kcal Atomic # 6 Polarization: -16.69 SS G_CDS: -3.51 Total: -20.21 kcal Atomic # 7 Polarization: -35.27 SS G_CDS: 0.44 Total: -34.83 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: 0.09 Total: -9.68 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.77 -10.05 -43.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588158808.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.060 kcal (2) G-P(sol) polarization free energy of solvation -33.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds