Wall clock time and date at job start Tue Mar 31 2020 06:18:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50698 * 109.47166 * 2 1 4 4 C 1.38260 * 119.99559 * 264.99427 * 3 2 1 5 5 C 1.38212 * 119.99650 * 179.71963 * 4 3 2 6 6 C 1.38255 * 120.00300 * 0.28729 * 5 4 3 7 7 C 1.38216 * 119.99744 * 359.97134 * 6 5 4 8 8 C 1.38208 * 120.00333 * 85.19279 * 3 2 1 9 9 C 1.50698 * 120.00186 * 0.03695 * 8 3 2 10 10 N 1.46502 * 109.46972 * 80.16985 * 9 8 3 11 11 C 1.34781 * 119.99750 * 179.97438 * 10 9 8 12 12 O 1.21275 * 120.00131 * 0.02562 * 11 10 9 13 13 C 1.50707 * 119.99726 * 180.02562 * 11 10 9 14 14 C 1.52994 * 109.47266 * 180.02562 * 13 11 10 15 15 C 1.52993 * 109.47414 * 180.02562 * 14 13 11 16 16 C 1.52994 * 109.47414 * 179.97438 * 15 14 13 17 17 C 1.50697 * 109.47387 * 179.97438 * 16 15 14 18 18 H 1.07995 * 119.99997 * 359.97438 * 17 16 15 19 19 C 1.37876 * 120.00388 * 179.97438 * 17 16 15 20 20 N 1.31526 * 119.99762 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 120.00460 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47083 * 59.99764 * 21 19 17 23 23 H 1.48495 * 109.47278 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.46638 * 299.99710 * 21 19 17 25 25 H 1.09000 * 109.47225 * 60.00352 * 1 2 3 26 26 H 1.09003 * 109.47047 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47000 * 300.00106 * 1 2 3 28 28 H 1.09005 * 109.47450 * 239.99707 * 2 1 3 29 29 H 1.09000 * 109.47225 * 119.99648 * 2 1 3 30 30 H 1.08002 * 120.00476 * 0.02562 * 4 3 2 31 31 H 1.07999 * 119.99941 * 180.25946 * 5 4 3 32 32 H 1.08005 * 120.00230 * 179.97438 * 6 5 4 33 33 H 1.08002 * 119.99715 * 179.97438 * 7 6 5 34 34 H 1.09001 * 109.47640 * 200.17138 * 9 8 3 35 35 H 1.09000 * 109.47091 * 320.17597 * 9 8 3 36 36 H 0.96996 * 119.99986 * 0.02562 * 10 9 8 37 37 H 1.09001 * 109.46711 * 300.00206 * 13 11 10 38 38 H 1.09000 * 109.47088 * 60.00095 * 13 11 10 39 39 H 1.09006 * 109.46538 * 300.00007 * 14 13 11 40 40 H 1.09001 * 109.47539 * 59.99103 * 14 13 11 41 41 H 1.09004 * 109.46918 * 299.99965 * 15 14 13 42 42 H 1.08995 * 109.47272 * 59.99074 * 15 14 13 43 43 H 1.09004 * 109.47050 * 299.99884 * 16 15 14 44 44 H 1.09000 * 109.47298 * 59.99625 * 16 15 14 45 45 H 0.96999 * 119.99648 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3612 2.0376 -1.1929 5 6 2.8164 3.3426 -1.1934 6 6 2.9485 4.0292 -0.0007 7 6 2.6248 3.4108 1.1922 8 6 2.1681 2.1058 1.1927 9 6 1.8147 1.4317 2.4933 10 7 2.9203 0.5660 2.9109 11 6 2.8273 -0.1417 4.0541 12 8 1.8281 -0.0623 4.7369 13 6 3.9649 -1.0318 4.4840 14 6 3.6061 -1.7163 5.8044 15 6 4.7613 -2.6194 6.2411 16 6 4.4027 -3.3034 7.5618 17 6 5.5403 -4.1934 7.9917 18 1 6.4299 -4.2644 7.3835 19 6 5.4454 -4.9171 9.1614 20 7 4.3623 -4.8302 9.9024 21 14 6.8558 -6.0198 9.6947 22 1 8.0818 -5.2020 9.8772 23 1 6.5082 -6.6828 10.9771 24 1 7.0988 -7.0507 8.6538 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.2578 1.5015 -2.1247 31 1 3.0694 3.8259 -2.1255 32 1 3.3047 5.0489 -0.0011 33 1 2.7284 3.9470 2.1240 34 1 1.6365 2.1879 3.2579 35 1 0.9145 0.8319 2.3588 36 1 3.7196 0.5028 2.3650 37 1 4.1432 -1.7882 3.7197 38 1 4.8650 -0.4317 4.6182 39 1 3.4276 -0.9600 6.5688 40 1 2.7061 -2.3163 5.6698 41 1 4.9403 -3.3756 5.4767 42 1 5.6610 -2.0190 6.3758 43 1 4.2240 -2.5469 8.3260 44 1 3.5029 -3.9037 7.4275 45 1 4.2954 -5.3396 10.7252 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588158808.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:36 Heat of formation + Delta-G solvation = -71.928372 kcal Electronic energy + Delta-G solvation = -21758.841781 eV Core-core repulsion = 18545.711345 eV Total energy + Delta-G solvation = -3213.130436 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.15901 -40.19325 -36.72541 -36.05147 -34.90297 -34.59807 -32.51633 -31.33007 -30.31345 -28.04656 -26.62935 -24.73642 -24.00244 -22.78648 -21.79209 -21.52012 -21.18272 -18.41574 -18.12185 -17.35113 -17.19787 -16.72850 -16.61911 -16.46421 -15.86321 -15.49844 -14.87286 -14.70452 -14.53264 -14.38979 -14.09319 -14.00819 -13.84404 -13.58201 -13.40501 -13.25363 -12.93470 -12.77491 -12.69851 -12.37035 -12.16715 -12.14969 -12.11645 -11.73655 -11.62708 -11.36612 -11.35371 -11.18085 -10.84154 -10.53691 -10.12187 -9.77734 -9.57842 -8.17870 -6.30163 0.29641 0.46586 1.40621 1.44850 1.52668 1.65563 2.24636 2.42755 2.90132 3.14526 3.63540 3.82572 3.87893 3.96107 4.07740 4.07958 4.16311 4.31514 4.34111 4.46730 4.54483 4.61181 4.66405 4.69136 4.73646 4.75068 4.85411 4.89515 5.00127 5.07678 5.09106 5.19814 5.20555 5.33184 5.34111 5.36110 5.42950 5.56533 5.58140 5.61002 5.71502 5.79005 5.88824 6.08258 6.26030 6.54583 6.88115 7.26275 7.39282 8.94153 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.031543 B = 0.002214 C = 0.002189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.461921 B =12646.340567 C =12785.390970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.091 4.091 3 C -0.068 4.068 4 C -0.126 4.126 5 C -0.112 4.112 6 C -0.132 4.132 7 C -0.108 4.108 8 C -0.115 4.115 9 C 0.161 3.839 10 N -0.713 5.713 11 C 0.512 3.488 12 O -0.587 6.587 13 C -0.128 4.128 14 C -0.096 4.096 15 C -0.095 4.095 16 C 0.018 3.982 17 C -0.542 4.542 18 H 0.066 0.934 19 C -0.008 4.008 20 N -0.938 5.938 21 Si 0.970 3.030 22 H -0.264 1.264 23 H -0.285 1.285 24 H -0.264 1.264 25 H 0.063 0.937 26 H 0.062 0.938 27 H 0.044 0.956 28 H 0.086 0.914 29 H 0.066 0.934 30 H 0.139 0.861 31 H 0.144 0.856 32 H 0.141 0.859 33 H 0.128 0.872 34 H 0.062 0.938 35 H 0.068 0.932 36 H 0.414 0.586 37 H 0.118 0.882 38 H 0.117 0.883 39 H 0.042 0.958 40 H 0.043 0.957 41 H 0.061 0.939 42 H 0.060 0.940 43 H -0.016 1.016 44 H -0.016 1.016 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.221 17.444 -28.071 33.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.129 4.129 3 C -0.069 4.069 4 C -0.144 4.144 5 C -0.130 4.130 6 C -0.150 4.150 7 C -0.126 4.126 8 C -0.115 4.115 9 C 0.038 3.962 10 N -0.365 5.365 11 C 0.300 3.700 12 O -0.467 6.467 13 C -0.167 4.167 14 C -0.134 4.134 15 C -0.133 4.133 16 C -0.019 4.019 17 C -0.580 4.580 18 H 0.084 0.916 19 C -0.205 4.205 20 N -0.578 5.578 21 Si 0.794 3.206 22 H -0.189 1.189 23 H -0.211 1.211 24 H -0.189 1.189 25 H 0.082 0.918 26 H 0.081 0.919 27 H 0.063 0.937 28 H 0.105 0.895 29 H 0.085 0.915 30 H 0.157 0.843 31 H 0.162 0.838 32 H 0.159 0.841 33 H 0.146 0.854 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.251 0.749 37 H 0.136 0.864 38 H 0.136 0.864 39 H 0.061 0.939 40 H 0.062 0.938 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.003 0.997 44 H 0.003 0.997 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.022 17.447 -27.436 32.654 hybrid contribution 0.426 -0.551 0.724 1.004 sum -2.595 16.896 -26.712 31.714 Atomic orbital electron populations 1.21741 0.94623 1.02170 1.01859 1.20637 0.96391 0.92393 1.03454 1.19927 0.97838 0.96415 0.92697 1.21307 0.99715 0.95634 0.97752 1.21516 0.97941 0.94517 0.99006 1.21414 1.00368 1.01001 0.92191 1.21268 0.97962 0.94117 0.99267 1.19647 1.03166 0.95207 0.93514 1.20124 0.90009 0.93006 0.93049 1.45979 1.20920 1.45638 1.23998 1.21199 0.88628 0.79960 0.80164 1.90698 1.34281 1.66619 1.55091 1.21674 0.97061 0.99278 0.98733 1.21242 0.98096 0.98023 0.96030 1.21444 0.97177 0.97690 0.96982 1.19058 0.95276 0.94195 0.93350 1.21724 1.03202 1.26020 1.07047 0.91574 1.26113 0.98837 0.98788 0.96766 1.70134 1.29651 1.43117 1.14929 0.85425 0.78948 0.78730 0.77480 1.18917 1.21089 1.18876 0.91798 0.91905 0.93670 0.89535 0.91490 0.84293 0.83816 0.84137 0.85414 0.91930 0.91433 0.74881 0.86354 0.86450 0.93901 0.93815 0.92048 0.92112 0.99747 0.99714 0.92862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 9.75 71.98 0.70 -1.37 16 2 C -0.09 -1.25 5.40 29.85 0.16 -1.09 16 3 C -0.07 -0.98 5.13 -19.87 -0.10 -1.08 16 4 C -0.13 -1.48 9.68 22.27 0.22 -1.26 16 5 C -0.11 -1.18 10.05 22.27 0.22 -0.95 16 6 C -0.13 -1.53 10.05 22.27 0.22 -1.30 16 7 C -0.11 -1.54 9.67 22.27 0.22 -1.33 16 8 C -0.11 -1.84 5.25 -19.87 -0.10 -1.94 16 9 C 0.16 3.20 4.95 85.63 0.42 3.62 16 10 N -0.71 -13.99 4.89 -466.78 -2.28 -16.27 16 11 C 0.51 14.09 7.83 87.66 0.69 14.77 16 12 O -0.59 -22.17 15.98 -3.01 -0.05 -22.22 16 13 C -0.13 -3.21 5.70 29.85 0.17 -3.04 16 14 C -0.10 -3.51 4.50 30.59 0.14 -3.37 16 15 C -0.10 -3.94 5.15 30.59 0.16 -3.78 16 16 C 0.02 1.02 4.97 29.85 0.15 1.17 16 17 C -0.54 -31.70 9.11 25.60 0.23 -31.47 16 18 H 0.07 3.61 7.74 -2.91 -0.02 3.59 16 19 C -0.01 -0.47 5.46 84.65 0.46 -0.01 16 20 N -0.94 -59.52 13.29 21.45 0.28 -59.23 16 21 Si 0.97 45.08 29.54 68.60 2.03 47.11 16 22 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 23 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 24 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 25 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.04 0.75 6.74 -2.39 -0.02 0.73 16 28 H 0.09 0.93 8.05 -2.38 -0.02 0.91 16 29 H 0.07 1.07 6.59 -2.39 -0.02 1.05 16 30 H 0.14 1.11 8.06 -2.91 -0.02 1.09 16 31 H 0.14 0.84 8.06 -2.91 -0.02 0.82 16 32 H 0.14 1.06 8.06 -2.91 -0.02 1.04 16 33 H 0.13 1.65 8.04 -2.91 -0.02 1.62 16 34 H 0.06 1.37 8.00 -2.39 -0.02 1.35 16 35 H 0.07 1.50 5.86 -2.39 -0.01 1.48 16 36 H 0.41 5.85 8.46 -92.71 -0.78 5.06 16 37 H 0.12 2.35 8.14 -2.39 -0.02 2.34 16 38 H 0.12 2.36 8.14 -2.39 -0.02 2.35 16 39 H 0.04 1.72 8.10 -2.38 -0.02 1.70 16 40 H 0.04 1.75 8.10 -2.39 -0.02 1.73 16 41 H 0.06 2.36 8.14 -2.38 -0.02 2.34 16 42 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 43 H -0.02 -0.97 8.14 -2.38 -0.02 -0.99 16 44 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 45 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 Total: -1.00 -75.36 370.98 4.11 -71.26 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: 0.17 Total: 11.78 kcal Atomic # 6 Polarization: -36.38 SS G_CDS: 3.95 Total: -32.42 kcal Atomic # 7 Polarization: -73.51 SS G_CDS: -2.00 Total: -75.50 kcal Atomic # 8 Polarization: -22.17 SS G_CDS: -0.05 Total: -22.22 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -75.36 4.11 -71.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588158808.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.671 kcal (2) G-P(sol) polarization free energy of solvation -75.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds