Wall clock time and date at job start Tue Mar 31 2020 06:18:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50706 * 109.47067 * 2 1 4 4 C 1.38306 * 119.92775 * 265.00139 * 3 2 1 5 5 C 1.38092 * 120.07136 * 179.97438 * 4 3 2 6 6 C 1.38900 * 119.92309 * 0.02584 * 5 4 3 7 7 N 1.39924 * 120.06757 * 180.02562 * 6 5 4 8 8 C 1.34779 * 119.99728 * 33.28302 * 7 6 5 9 9 O 1.21284 * 120.00759 * 5.27417 * 8 7 6 10 10 C 1.50707 * 119.99718 * 185.27823 * 8 7 6 11 11 C 1.53002 * 109.47094 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.46970 * 179.97438 * 11 10 8 13 13 C 1.53002 * 109.46970 * 179.97438 * 12 11 10 14 14 C 1.50707 * 109.47094 * 180.02562 * 13 12 11 15 15 H 1.08001 * 119.99693 * 359.97438 * 14 13 12 16 16 C 1.37871 * 119.99856 * 180.02562 * 14 13 12 17 17 N 1.31521 * 119.99782 * 179.97438 * 16 14 13 18 18 Si 1.86798 * 120.00222 * 359.97438 * 16 14 13 19 19 H 1.48503 * 109.46764 * 90.00524 * 18 16 14 20 20 H 1.48497 * 109.47429 * 210.00039 * 18 16 14 21 21 H 1.48498 * 109.47392 * 330.00631 * 18 16 14 22 22 C 1.38848 * 119.86259 * 359.97438 * 6 5 4 23 23 C 1.38135 * 119.92699 * 359.73214 * 22 6 5 24 24 C 1.50705 * 119.96406 * 180.27185 * 23 22 6 25 25 H 1.09000 * 109.46722 * 299.99976 * 1 2 3 26 26 H 1.09001 * 109.47163 * 59.99391 * 1 2 3 27 27 H 1.09000 * 109.47110 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47168 * 120.00208 * 2 1 3 29 29 H 1.09007 * 109.47034 * 240.00216 * 2 1 3 30 30 H 1.08003 * 119.96386 * 359.97438 * 4 3 2 31 31 H 1.07993 * 120.04032 * 180.02562 * 5 4 3 32 32 H 0.96997 * 120.00183 * 213.28770 * 7 6 5 33 33 H 1.09004 * 109.46769 * 299.99880 * 10 8 7 34 34 H 1.08994 * 109.47387 * 59.99516 * 10 8 7 35 35 H 1.08991 * 109.46946 * 299.99689 * 11 10 8 36 36 H 1.09003 * 109.47097 * 59.99626 * 11 10 8 37 37 H 1.08997 * 109.47385 * 300.00172 * 12 11 10 38 38 H 1.09003 * 109.47306 * 60.00012 * 12 11 10 39 39 H 1.08998 * 109.46963 * 299.99536 * 13 12 11 40 40 H 1.08989 * 109.47108 * 60.00160 * 13 12 11 41 41 H 0.96997 * 119.99550 * 179.97438 * 17 16 14 42 42 H 1.07995 * 120.03758 * 180.02562 * 22 6 5 43 43 H 1.08998 * 109.47227 * 270.25570 * 24 23 22 44 44 H 1.09001 * 109.46961 * 30.25764 * 24 23 22 45 45 H 1.09004 * 109.47001 * 150.25470 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.3609 2.0366 -1.1941 5 6 2.8209 3.3386 -1.1976 6 6 2.9541 4.0297 0.0000 7 7 3.4195 5.3492 -0.0001 8 6 3.1216 6.1688 -1.0278 9 8 2.3722 5.7941 -1.9048 10 6 3.7197 7.5508 -1.0872 11 6 3.2239 8.2674 -2.3449 12 6 3.8306 9.6707 -2.4049 13 6 3.3353 10.3870 -3.6628 14 6 3.9334 11.7691 -3.7223 15 1 4.5997 12.1031 -2.9407 16 6 3.6290 12.6072 -4.7738 17 7 4.1506 13.8135 -4.8254 18 14 2.4759 12.0297 -6.1251 19 1 1.0781 12.3797 -5.7661 20 1 2.8395 12.6927 -7.4031 21 1 2.5933 10.5575 -6.2803 22 6 2.6235 3.4086 1.1970 23 6 2.1581 2.1080 1.1931 24 6 1.7932 1.4352 2.4913 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 0.8899 29 1 1.8934 -0.5138 -0.8901 30 1 2.2574 1.4985 -2.1248 31 1 3.0769 3.8191 -2.1303 32 1 3.9566 5.6741 0.7394 33 1 3.4188 8.1151 -0.2045 34 1 4.8066 7.4754 -1.1171 35 1 3.5251 7.7029 -3.2272 36 1 2.1369 8.3428 -2.3154 37 1 3.5291 10.2349 -1.5224 38 1 4.9176 9.5956 -2.4341 39 1 3.6373 9.8226 -4.5450 40 1 2.2484 10.4621 -3.6340 41 1 3.9368 14.4030 -5.5654 42 1 2.7256 3.9434 2.1297 43 1 2.6700 0.9317 2.8986 44 1 1.4410 2.1832 3.2017 45 1 1.0047 0.7042 2.3125 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588162953.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:40 Heat of formation + Delta-G solvation = -48.890042 kcal Electronic energy + Delta-G solvation = -21692.795047 eV Core-core repulsion = 18480.663628 eV Total energy + Delta-G solvation = -3212.131419 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.75424 -39.20506 -35.85579 -34.98762 -33.35461 -32.72062 -32.52277 -30.36158 -28.91550 -27.21095 -26.03815 -23.88755 -22.65310 -22.16726 -20.88527 -20.07540 -19.89457 -17.70013 -16.91579 -16.53430 -16.10128 -15.95853 -15.51493 -14.50670 -14.45071 -14.17834 -14.14373 -13.94740 -13.70535 -13.31528 -13.14137 -12.66730 -12.64404 -12.59165 -12.43789 -12.16232 -12.04402 -11.77311 -11.60110 -11.21151 -11.13754 -11.09012 -10.76556 -10.56514 -10.33697 -9.98268 -9.82368 -9.66131 -9.45449 -9.12738 -8.93635 -8.49664 -8.14431 -6.00848 -3.98408 1.06429 1.19507 2.53183 2.90888 3.35169 3.42223 3.48077 3.56526 4.46795 4.49787 4.52500 4.65803 4.72464 4.79080 4.96596 5.06081 5.13711 5.20993 5.22531 5.23454 5.28840 5.33821 5.34294 5.50839 5.51340 5.59007 5.69444 5.72183 5.84091 5.93549 5.98937 6.08972 6.14834 6.18719 6.34221 6.40081 6.46382 6.65284 6.79081 6.87462 6.97356 7.22715 7.36964 7.49750 7.84231 8.03581 8.57774 9.03981 9.62452 11.12599 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.034993 B = 0.002288 C = 0.002189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.967668 B =12232.451392 C =12787.768879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.082 4.082 3 C -0.104 4.104 4 C -0.094 4.094 5 C -0.124 4.124 6 C 0.152 3.848 7 N -0.681 5.681 8 C 0.512 3.488 9 O -0.516 6.516 10 C -0.138 4.138 11 C -0.107 4.107 12 C -0.103 4.103 13 C -0.016 4.016 14 C -0.519 4.519 15 H 0.071 0.929 16 C 0.064 3.936 17 N -0.906 5.906 18 Si 0.880 3.120 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.265 1.265 22 C -0.148 4.148 23 C -0.066 4.066 24 C -0.117 4.117 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.123 0.877 31 H 0.134 0.866 32 H 0.410 0.590 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.053 0.947 38 H 0.053 0.947 39 H 0.016 0.984 40 H 0.011 0.989 41 H 0.262 0.738 42 H 0.124 0.876 43 H 0.070 0.930 44 H 0.065 0.935 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.174 -28.855 15.560 32.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.119 4.119 3 C -0.105 4.105 4 C -0.113 4.113 5 C -0.144 4.144 6 C 0.057 3.943 7 N -0.327 5.327 8 C 0.301 3.699 9 O -0.389 6.389 10 C -0.178 4.178 11 C -0.145 4.145 12 C -0.140 4.140 13 C -0.053 4.053 14 C -0.557 4.557 15 H 0.089 0.911 16 C -0.137 4.137 17 N -0.545 5.545 18 Si 0.707 3.293 19 H -0.203 1.203 20 H -0.215 1.215 21 H -0.189 1.189 22 C -0.168 4.168 23 C -0.067 4.067 24 C -0.173 4.173 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.090 0.910 29 H 0.088 0.912 30 H 0.141 0.859 31 H 0.152 0.848 32 H 0.246 0.754 33 H 0.113 0.887 34 H 0.115 0.885 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.034 0.966 40 H 0.030 0.970 41 H 0.072 0.928 42 H 0.142 0.858 43 H 0.088 0.912 44 H 0.084 0.916 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -3.688 -28.879 14.777 32.649 hybrid contribution -0.266 0.181 -0.374 0.494 sum -3.954 -28.697 14.403 32.352 Atomic orbital electron populations 1.21784 0.94886 1.01552 1.02408 1.20501 0.96081 0.92713 1.02650 1.19700 1.01687 0.96457 0.92616 1.20910 0.98548 0.94343 0.97494 1.21157 1.01379 0.94031 0.97863 1.17753 0.98079 0.84213 0.94218 1.43744 1.54033 1.10032 1.24881 1.21313 0.80461 0.87516 0.80658 1.90718 1.34368 1.76210 1.37653 1.21807 1.02082 0.91230 1.02639 1.21502 1.01170 0.96749 0.95065 1.21477 0.99637 0.92724 1.00178 1.19578 0.96098 0.96167 0.93463 1.21177 1.28656 0.96965 1.08938 0.91106 1.25049 0.95888 0.94740 0.97994 1.69924 1.44823 1.07578 1.32160 0.86768 0.81402 0.79562 0.81525 1.20321 1.21450 1.18912 1.20720 1.03627 0.95776 0.96724 1.19475 0.98714 0.93515 0.94986 1.20858 1.01792 1.00634 0.94043 0.92464 0.92446 0.92501 0.91039 0.91203 0.85862 0.84774 0.75399 0.88666 0.88545 0.91693 0.91697 0.92805 0.92776 0.96605 0.97044 0.92818 0.85846 0.91181 0.91623 0.91038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.70 37.16 0.36 -0.61 16 2 C -0.08 -0.56 5.36 -27.88 -0.15 -0.71 16 3 C -0.10 -0.96 5.14 -104.59 -0.54 -1.50 16 4 C -0.09 -1.00 9.67 -39.61 -0.38 -1.38 16 5 C -0.12 -1.54 8.66 -39.39 -0.34 -1.88 16 6 C 0.15 1.73 6.28 -83.69 -0.53 1.20 16 7 N -0.68 -7.01 5.34 -9.86 -0.05 -7.06 16 8 C 0.51 6.74 7.57 -10.98 -0.08 6.66 16 9 O -0.52 -8.82 13.67 5.55 0.08 -8.74 16 10 C -0.14 -1.66 5.70 -27.88 -0.16 -1.82 16 11 C -0.11 -1.76 4.50 -26.73 -0.12 -1.88 16 12 C -0.10 -1.99 5.15 -26.73 -0.14 -2.13 16 13 C -0.02 -0.38 4.04 -27.88 -0.11 -0.50 16 14 C -0.52 -15.09 9.66 -34.44 -0.33 -15.43 16 15 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 16 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 17 N -0.91 -28.39 13.96 55.43 0.77 -27.62 16 18 Si 0.88 22.40 27.47 -169.99 -4.67 17.73 16 19 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 20 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 21 H -0.26 -6.53 6.54 56.52 0.37 -6.16 16 22 C -0.15 -1.41 9.62 -39.39 -0.38 -1.79 16 23 C -0.07 -0.59 5.88 -104.65 -0.62 -1.21 16 24 C -0.12 -0.72 9.21 36.01 0.33 -0.39 16 25 H 0.06 0.37 6.87 -51.93 -0.36 0.02 16 26 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.07 0.41 7.00 -51.93 -0.36 0.05 16 29 H 0.07 0.44 8.05 -51.93 -0.42 0.02 16 30 H 0.12 1.10 8.06 -52.48 -0.42 0.68 16 31 H 0.13 1.87 6.42 -52.49 -0.34 1.54 16 32 H 0.41 2.78 8.82 -40.82 -0.36 2.42 16 33 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 35 H 0.06 1.12 8.10 -51.93 -0.42 0.70 16 36 H 0.06 1.13 8.10 -51.93 -0.42 0.71 16 37 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 38 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 40 H 0.01 0.28 7.57 -51.94 -0.39 -0.12 16 41 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 42 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 43 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 44 H 0.06 0.36 8.09 -51.93 -0.42 -0.06 16 45 H 0.07 0.39 5.39 -51.93 -0.28 0.11 16 LS Contribution 363.81 15.07 5.48 5.48 Total: -1.00 -34.26 363.81 -9.20 -43.46 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: -7.53 Total: -1.71 kcal Atomic # 6 Polarization: -18.26 SS G_CDS: -3.28 Total: -21.54 kcal Atomic # 7 Polarization: -35.40 SS G_CDS: 0.72 Total: -34.68 kcal Atomic # 8 Polarization: -8.82 SS G_CDS: 0.08 Total: -8.74 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -4.67 Total: 17.73 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.26 -9.20 -43.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588162953.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.427 kcal (2) G-P(sol) polarization free energy of solvation -34.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds