Wall clock time and date at job start Tue Mar 31 2020 06:18:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50706 * 109.47067 * 2 1 4 4 C 1.38306 * 119.92775 * 265.00139 * 3 2 1 5 5 C 1.38092 * 120.07136 * 179.97438 * 4 3 2 6 6 C 1.38900 * 119.92309 * 0.02584 * 5 4 3 7 7 N 1.39924 * 120.06757 * 180.02562 * 6 5 4 8 8 C 1.34779 * 119.99728 * 33.28302 * 7 6 5 9 9 O 1.21284 * 120.00759 * 5.27417 * 8 7 6 10 10 C 1.50707 * 119.99718 * 185.27823 * 8 7 6 11 11 C 1.53002 * 109.47094 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.46970 * 179.97438 * 11 10 8 13 13 C 1.53002 * 109.46970 * 179.97438 * 12 11 10 14 14 C 1.50707 * 109.47094 * 180.02562 * 13 12 11 15 15 H 1.08001 * 119.99693 * 359.97438 * 14 13 12 16 16 C 1.37871 * 119.99856 * 180.02562 * 14 13 12 17 17 N 1.31521 * 119.99782 * 179.97438 * 16 14 13 18 18 Si 1.86798 * 120.00222 * 359.97438 * 16 14 13 19 19 H 1.48503 * 109.46764 * 90.00524 * 18 16 14 20 20 H 1.48497 * 109.47429 * 210.00039 * 18 16 14 21 21 H 1.48498 * 109.47392 * 330.00631 * 18 16 14 22 22 C 1.38848 * 119.86259 * 359.97438 * 6 5 4 23 23 C 1.38135 * 119.92699 * 359.73214 * 22 6 5 24 24 C 1.50705 * 119.96406 * 180.27185 * 23 22 6 25 25 H 1.09000 * 109.46722 * 299.99976 * 1 2 3 26 26 H 1.09001 * 109.47163 * 59.99391 * 1 2 3 27 27 H 1.09000 * 109.47110 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47168 * 120.00208 * 2 1 3 29 29 H 1.09007 * 109.47034 * 240.00216 * 2 1 3 30 30 H 1.08003 * 119.96386 * 359.97438 * 4 3 2 31 31 H 1.07993 * 120.04032 * 180.02562 * 5 4 3 32 32 H 0.96997 * 120.00183 * 213.28770 * 7 6 5 33 33 H 1.09004 * 109.46769 * 299.99880 * 10 8 7 34 34 H 1.08994 * 109.47387 * 59.99516 * 10 8 7 35 35 H 1.08991 * 109.46946 * 299.99689 * 11 10 8 36 36 H 1.09003 * 109.47097 * 59.99626 * 11 10 8 37 37 H 1.08997 * 109.47385 * 300.00172 * 12 11 10 38 38 H 1.09003 * 109.47306 * 60.00012 * 12 11 10 39 39 H 1.08998 * 109.46963 * 299.99536 * 13 12 11 40 40 H 1.08989 * 109.47108 * 60.00160 * 13 12 11 41 41 H 0.96997 * 119.99550 * 179.97438 * 17 16 14 42 42 H 1.07995 * 120.03758 * 180.02562 * 22 6 5 43 43 H 1.08998 * 109.47227 * 270.25570 * 24 23 22 44 44 H 1.09001 * 109.46961 * 30.25764 * 24 23 22 45 45 H 1.09004 * 109.47001 * 150.25470 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.3609 2.0366 -1.1941 5 6 2.8209 3.3386 -1.1976 6 6 2.9541 4.0297 0.0000 7 7 3.4195 5.3492 -0.0001 8 6 3.1216 6.1688 -1.0278 9 8 2.3722 5.7941 -1.9048 10 6 3.7197 7.5508 -1.0872 11 6 3.2239 8.2674 -2.3449 12 6 3.8306 9.6707 -2.4049 13 6 3.3353 10.3870 -3.6628 14 6 3.9334 11.7691 -3.7223 15 1 4.5997 12.1031 -2.9407 16 6 3.6290 12.6072 -4.7738 17 7 4.1506 13.8135 -4.8254 18 14 2.4759 12.0297 -6.1251 19 1 1.0781 12.3797 -5.7661 20 1 2.8395 12.6927 -7.4031 21 1 2.5933 10.5575 -6.2803 22 6 2.6235 3.4086 1.1970 23 6 2.1581 2.1080 1.1931 24 6 1.7932 1.4352 2.4913 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 0.8899 29 1 1.8934 -0.5138 -0.8901 30 1 2.2574 1.4985 -2.1248 31 1 3.0769 3.8191 -2.1303 32 1 3.9566 5.6741 0.7394 33 1 3.4188 8.1151 -0.2045 34 1 4.8066 7.4754 -1.1171 35 1 3.5251 7.7029 -3.2272 36 1 2.1369 8.3428 -2.3154 37 1 3.5291 10.2349 -1.5224 38 1 4.9176 9.5956 -2.4341 39 1 3.6373 9.8226 -4.5450 40 1 2.2484 10.4621 -3.6340 41 1 3.9368 14.4030 -5.5654 42 1 2.7256 3.9434 2.1297 43 1 2.6700 0.9317 2.8986 44 1 1.4410 2.1832 3.2017 45 1 1.0047 0.7042 2.3125 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588162953.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:39 Heat of formation + Delta-G solvation = -68.659257 kcal Electronic energy + Delta-G solvation = -21693.652304 eV Core-core repulsion = 18480.663628 eV Total energy + Delta-G solvation = -3212.988676 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.64204 -40.05279 -36.92841 -36.36735 -34.65330 -34.02903 -33.35207 -31.93861 -29.79795 -27.90516 -27.54548 -24.82883 -23.76023 -23.11637 -22.00096 -21.58612 -20.81104 -18.86654 -18.57201 -17.75512 -17.07767 -16.66426 -16.43711 -16.31229 -15.58895 -15.39094 -14.91191 -14.82415 -14.67897 -14.45684 -14.09849 -13.90551 -13.77131 -13.62454 -13.52460 -13.20884 -12.97189 -12.88276 -12.80056 -12.36839 -12.25353 -12.09372 -11.81546 -11.76712 -11.67659 -11.51710 -11.37061 -11.27072 -11.17512 -10.77493 -10.76460 -9.68491 -8.94110 -8.30412 -6.33357 0.26956 0.42792 1.33915 1.35409 1.48170 1.57269 2.04492 2.35017 2.79571 3.04899 3.67662 3.87195 3.89626 3.97448 4.05669 4.12930 4.23577 4.34692 4.44520 4.54274 4.58798 4.62661 4.65145 4.68743 4.74761 4.83433 4.87570 4.90883 4.96509 5.08815 5.10266 5.12247 5.18428 5.24441 5.26942 5.34558 5.39670 5.50241 5.57140 5.60419 5.64704 5.68011 5.75462 6.10825 6.28716 6.42079 6.74605 7.12854 7.31400 8.86074 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.034993 B = 0.002288 C = 0.002189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.967668 B =12232.451392 C =12787.768879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.081 4.081 3 C -0.106 4.106 4 C -0.107 4.107 5 C -0.150 4.150 6 C 0.131 3.869 7 N -0.664 5.664 8 C 0.512 3.488 9 O -0.563 6.563 10 C -0.128 4.128 11 C -0.098 4.098 12 C -0.094 4.094 13 C -0.018 4.018 14 C -0.530 4.530 15 H 0.038 0.962 16 C 0.003 3.997 17 N -0.950 5.950 18 Si 0.947 3.053 19 H -0.267 1.267 20 H -0.282 1.282 21 H -0.253 1.253 22 C -0.147 4.147 23 C -0.070 4.070 24 C -0.115 4.115 25 H 0.057 0.943 26 H 0.042 0.958 27 H 0.072 0.928 28 H 0.088 0.912 29 H 0.074 0.926 30 H 0.130 0.870 31 H 0.109 0.891 32 H 0.428 0.572 33 H 0.122 0.878 34 H 0.121 0.879 35 H 0.051 0.949 36 H 0.052 0.948 37 H 0.059 0.941 38 H 0.058 0.942 39 H 0.013 0.987 40 H 0.012 0.988 41 H 0.266 0.734 42 H 0.148 0.852 43 H 0.084 0.916 44 H 0.074 0.926 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.859 -31.154 17.316 35.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.118 4.118 3 C -0.107 4.107 4 C -0.125 4.125 5 C -0.171 4.171 6 C 0.037 3.963 7 N -0.311 5.311 8 C 0.301 3.699 9 O -0.441 6.441 10 C -0.167 4.167 11 C -0.136 4.136 12 C -0.131 4.131 13 C -0.055 4.055 14 C -0.568 4.568 15 H 0.056 0.944 16 C -0.194 4.194 17 N -0.591 5.591 18 Si 0.771 3.229 19 H -0.192 1.192 20 H -0.207 1.207 21 H -0.177 1.177 22 C -0.167 4.167 23 C -0.071 4.071 24 C -0.172 4.172 25 H 0.076 0.924 26 H 0.061 0.939 27 H 0.091 0.909 28 H 0.106 0.894 29 H 0.092 0.908 30 H 0.148 0.852 31 H 0.127 0.873 32 H 0.267 0.733 33 H 0.140 0.860 34 H 0.139 0.861 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.032 0.968 40 H 0.031 0.969 41 H 0.075 0.925 42 H 0.166 0.834 43 H 0.102 0.898 44 H 0.093 0.907 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -4.348 -31.197 16.585 35.597 hybrid contribution -0.008 0.873 -0.842 1.213 sum -4.356 -30.324 15.742 34.443 Atomic orbital electron populations 1.21773 0.94553 1.02419 1.01742 1.20558 0.96245 0.91257 1.03728 1.20024 1.00772 0.97647 0.92220 1.21078 0.98821 0.93969 0.98681 1.21118 1.03297 0.95129 0.97520 1.17930 0.99216 0.84549 0.94613 1.43520 1.53499 1.09455 1.24612 1.21447 0.79860 0.87991 0.80556 1.90709 1.36680 1.77137 1.39545 1.21704 1.03325 0.90396 1.01308 1.21292 1.00236 0.95090 0.97025 1.21335 0.99926 0.94026 0.97836 1.19582 0.95881 0.94073 0.95981 1.21541 1.28053 0.99186 1.07986 0.94398 1.26001 0.97778 0.94805 1.00819 1.70062 1.46633 1.09001 1.33381 0.85693 0.79272 0.79639 0.78272 1.19248 1.20722 1.17664 1.21009 1.02722 0.96143 0.96819 1.19903 0.97590 0.93415 0.96145 1.20921 1.02662 1.00975 0.92593 0.92391 0.93861 0.90885 0.89359 0.90762 0.85246 0.87323 0.73272 0.85980 0.86089 0.92975 0.92906 0.92267 0.92342 0.96842 0.96931 0.92527 0.83445 0.89767 0.90680 0.90218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 9.70 71.98 0.70 -0.94 16 2 C -0.08 -0.94 5.36 29.85 0.16 -0.78 16 3 C -0.11 -1.82 5.14 -19.84 -0.10 -1.92 16 4 C -0.11 -2.28 9.67 22.25 0.22 -2.07 16 5 C -0.15 -3.86 8.66 22.39 0.19 -3.67 16 6 C 0.13 2.90 6.28 38.15 0.24 3.14 16 7 N -0.66 -12.77 5.34 -303.49 -1.62 -14.39 16 8 C 0.51 13.09 7.57 87.66 0.66 13.75 16 9 O -0.56 -19.67 13.67 -3.04 -0.04 -19.71 16 10 C -0.13 -2.83 5.70 29.85 0.17 -2.66 16 11 C -0.10 -3.14 4.50 30.59 0.14 -3.00 16 12 C -0.09 -3.56 5.15 30.59 0.16 -3.40 16 13 C -0.02 -0.86 4.04 29.85 0.12 -0.74 16 14 C -0.53 -31.26 9.66 25.60 0.25 -31.02 16 15 H 0.04 2.41 7.99 -2.91 -0.02 2.39 16 16 C 0.00 0.16 5.47 84.65 0.46 0.62 16 17 N -0.95 -60.65 13.96 21.45 0.30 -60.35 16 18 Si 0.95 46.22 27.47 68.60 1.88 48.10 16 19 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 20 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 21 H -0.25 -11.75 6.54 99.48 0.65 -11.10 16 22 C -0.15 -2.51 9.62 22.39 0.22 -2.29 16 23 C -0.07 -1.10 5.88 -19.88 -0.12 -1.21 16 24 C -0.12 -1.05 9.21 71.24 0.66 -0.39 16 25 H 0.06 0.63 6.87 -2.39 -0.02 0.62 16 26 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 27 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.09 0.75 7.00 -2.39 -0.02 0.73 16 29 H 0.07 0.80 8.05 -2.38 -0.02 0.78 16 30 H 0.13 2.41 8.06 -2.91 -0.02 2.39 16 31 H 0.11 3.29 6.42 -2.91 -0.02 3.27 16 32 H 0.43 4.76 8.82 -92.71 -0.82 3.94 16 33 H 0.12 2.09 8.14 -2.38 -0.02 2.07 16 34 H 0.12 2.13 8.14 -2.39 -0.02 2.11 16 35 H 0.05 1.79 8.10 -2.39 -0.02 1.77 16 36 H 0.05 1.81 8.10 -2.39 -0.02 1.79 16 37 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 38 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 39 H 0.01 0.65 7.20 -2.39 -0.02 0.63 16 40 H 0.01 0.60 7.57 -2.39 -0.02 0.58 16 41 H 0.27 15.83 8.31 -92.71 -0.77 15.05 16 42 H 0.15 1.71 8.06 -2.91 -0.02 1.69 16 43 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 44 H 0.07 0.57 8.09 -2.39 -0.02 0.55 16 45 H 0.08 0.61 5.39 -2.39 -0.01 0.60 16 Total: -1.00 -76.30 363.81 4.73 -71.57 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: 0.09 Total: 11.36 kcal Atomic # 6 Polarization: -40.70 SS G_CDS: 4.12 Total: -36.58 kcal Atomic # 7 Polarization: -73.42 SS G_CDS: -1.32 Total: -74.74 kcal Atomic # 8 Polarization: -19.67 SS G_CDS: -0.04 Total: -19.71 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 1.88 Total: 48.10 kcal Total: -76.30 4.73 -71.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588162953.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.909 kcal (2) G-P(sol) polarization free energy of solvation -76.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds