Wall clock time and date at job start Tue Mar 31 2020 06:29:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46885 * 2 1 4 4 C 1.50703 * 109.47129 * 180.02562 * 3 2 1 5 5 C 1.38138 * 120.03219 * 264.99965 * 4 3 2 6 6 C 1.38253 * 120.07057 * 179.97438 * 5 4 3 7 7 C 1.38308 * 120.14072 * 0.03450 * 6 5 4 8 8 C 1.38087 * 120.07267 * 0.02562 * 7 6 5 9 9 C 1.38843 * 120.03629 * 84.71875 * 4 3 2 10 10 N 1.39925 * 120.07349 * 0.02562 * 9 4 3 11 11 C 1.34780 * 120.00040 * 145.02614 * 10 9 4 12 12 O 1.21285 * 119.99969 * 4.49012 * 11 10 9 13 13 C 1.50700 * 119.99713 * 184.48984 * 11 10 9 14 14 C 1.53004 * 109.46985 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.47103 * 180.02562 * 14 13 11 16 16 C 1.53004 * 109.47103 * 179.97438 * 15 14 13 17 17 C 1.50700 * 109.46985 * 179.97438 * 16 15 14 18 18 H 1.07998 * 120.00305 * 359.97438 * 17 16 15 19 19 C 1.37874 * 119.99780 * 180.02562 * 17 16 15 20 20 N 1.31520 * 120.00215 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 120.00184 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47130 * 89.99734 * 21 19 17 23 23 H 1.48497 * 109.47605 * 209.99839 * 21 19 17 24 24 H 1.48505 * 109.47326 * 329.99867 * 21 19 17 25 25 H 1.08995 * 109.47258 * 300.00407 * 1 2 3 26 26 H 1.08998 * 109.47118 * 60.00689 * 1 2 3 27 27 H 1.09006 * 109.47005 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47258 * 239.99593 * 2 1 3 29 29 H 1.09000 * 109.46833 * 119.99775 * 2 1 3 30 30 H 1.08995 * 109.47505 * 59.99744 * 3 2 1 31 31 H 1.09000 * 109.47201 * 299.99550 * 3 2 1 32 32 H 1.07999 * 119.96438 * 359.96978 * 5 4 3 33 33 H 1.07997 * 119.93185 * 180.02562 * 6 5 4 34 34 H 1.08000 * 119.96656 * 179.97438 * 7 6 5 35 35 H 1.07996 * 120.04031 * 179.97438 * 8 7 6 36 36 H 0.97003 * 119.99895 * 325.02899 * 10 9 4 37 37 H 1.09002 * 109.47105 * 300.00103 * 13 11 10 38 38 H 1.09000 * 109.47131 * 60.00418 * 13 11 10 39 39 H 1.09002 * 109.47104 * 299.99884 * 14 13 11 40 40 H 1.09000 * 109.47023 * 60.00133 * 14 13 11 41 41 H 1.09002 * 109.46808 * 299.99774 * 15 14 13 42 42 H 1.08999 * 109.47539 * 59.99516 * 15 14 13 43 43 H 1.08990 * 109.46968 * 299.99999 * 16 15 14 44 44 H 1.09000 * 109.47023 * 59.99842 * 16 15 14 45 45 H 0.96995 * 120.00046 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4426 -0.0006 5 6 4.2389 1.5466 1.1905 6 6 5.6214 1.5463 1.1908 7 6 6.3162 1.4424 -0.0005 8 6 5.6305 1.3393 -1.1947 9 6 4.2415 1.3321 -1.1978 10 7 3.5437 1.2212 -2.4056 11 6 4.0368 1.7900 -3.5235 12 8 5.1237 2.3277 -3.5016 13 6 3.2376 1.7578 -4.8008 14 6 4.0185 2.4671 -5.9090 15 6 3.2069 2.4350 -7.2055 16 6 3.9875 3.1449 -8.3135 17 6 3.1883 3.1127 -9.5908 18 1 2.2207 2.6335 -9.6104 19 6 3.6930 3.6941 -10.7345 20 7 4.8716 4.2772 -10.7108 21 14 2.7028 3.6537 -12.3179 22 1 1.8335 4.8555 -12.3889 23 1 3.6274 3.6423 -13.4799 24 1 1.8602 2.4311 -12.3438 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9564 0.8899 31 1 1.6767 1.9563 -0.8900 32 1 3.6992 1.6285 2.1224 33 1 6.1600 1.6273 2.1234 34 1 7.3962 1.4428 0.0030 35 1 6.1735 1.2587 -2.1247 36 1 2.7050 0.7349 -2.4382 37 1 3.0563 0.7226 -5.0899 38 1 2.2848 2.2641 -4.6460 39 1 4.2002 3.5023 -5.6200 40 1 4.9711 1.9604 -6.0636 41 1 3.0249 1.3999 -7.4946 42 1 2.2544 2.9418 -7.0506 43 1 4.1692 4.1798 -8.0242 44 1 4.9402 2.6384 -8.4686 45 1 5.2265 4.6866 -11.5154 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588281696.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:19 Heat of formation + Delta-G solvation = -52.089395 kcal Electronic energy + Delta-G solvation = -21964.715853 eV Core-core repulsion = 18752.445700 eV Total energy + Delta-G solvation = -3212.270153 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.79920 -38.82202 -35.58366 -35.06698 -34.56198 -32.65952 -31.28675 -30.46919 -29.14512 -26.71847 -25.66733 -23.42826 -22.55826 -21.93960 -21.02486 -20.21240 -20.00677 -17.83757 -16.92675 -16.19323 -16.09150 -15.94279 -15.42560 -14.68682 -14.59852 -14.40425 -14.21262 -13.82377 -13.77391 -13.65810 -12.83606 -12.63272 -12.53447 -12.26944 -12.20031 -11.77397 -11.65072 -11.62049 -11.54621 -11.18465 -11.05100 -10.99504 -10.57033 -10.51116 -10.43977 -10.42343 -9.80447 -9.62552 -9.24199 -8.99637 -8.89744 -8.30775 -8.23144 -5.95519 -3.98152 1.11176 1.25365 2.58824 2.96352 3.33840 3.39930 3.42982 3.63458 4.41141 4.48535 4.51777 4.65339 4.74939 4.79749 4.96613 5.03816 5.10287 5.22159 5.29022 5.31150 5.36448 5.39871 5.43763 5.47856 5.48863 5.69166 5.74913 5.80391 5.90780 5.93809 6.09941 6.15689 6.26345 6.28488 6.36993 6.42966 6.52192 6.81140 6.91558 6.99146 7.18052 7.27352 7.73574 7.89245 8.05596 8.09019 8.47343 9.09589 9.65576 11.15840 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.023357 B = 0.002545 C = 0.002325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.476723 B =10997.716966 C =12042.294272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.120 4.120 3 C -0.081 4.081 4 C -0.113 4.113 5 C -0.102 4.102 6 C -0.137 4.137 7 C -0.107 4.107 8 C -0.120 4.120 9 C 0.152 3.848 10 N -0.680 5.680 11 C 0.511 3.489 12 O -0.514 6.514 13 C -0.138 4.138 14 C -0.104 4.104 15 C -0.110 4.110 16 C 0.020 3.980 17 C -0.520 4.520 18 H 0.054 0.946 19 C 0.055 3.945 20 N -0.895 5.895 21 Si 0.891 3.109 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.274 1.274 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.059 0.941 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.122 0.878 33 H 0.120 0.880 34 H 0.123 0.877 35 H 0.141 0.859 36 H 0.409 0.591 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.047 0.953 42 H 0.047 0.953 43 H 0.016 0.984 44 H 0.016 0.984 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.476 -9.455 26.729 28.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.158 4.158 3 C -0.119 4.119 4 C -0.115 4.115 5 C -0.121 4.121 6 C -0.156 4.156 7 C -0.125 4.125 8 C -0.140 4.140 9 C 0.058 3.942 10 N -0.326 5.326 11 C 0.300 3.700 12 O -0.388 6.388 13 C -0.178 4.178 14 C -0.142 4.142 15 C -0.148 4.148 16 C -0.017 4.017 17 C -0.559 4.559 18 H 0.072 0.928 19 C -0.146 4.146 20 N -0.535 5.535 21 Si 0.719 3.281 22 H -0.207 1.207 23 H -0.212 1.212 24 H -0.199 1.199 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.140 0.860 33 H 0.138 0.862 34 H 0.141 0.859 35 H 0.158 0.842 36 H 0.245 0.755 37 H 0.112 0.888 38 H 0.112 0.888 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.034 0.966 44 H 0.034 0.966 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.593 -8.952 26.534 28.377 hybrid contribution -0.860 -0.166 -0.883 1.244 sum -5.453 -9.118 25.650 27.763 Atomic orbital electron populations 1.21803 0.95404 1.01878 1.02084 1.21539 0.95891 0.95990 1.02354 1.20589 0.90636 0.97381 1.03271 1.19680 0.95628 1.03975 0.92224 1.20806 0.94134 1.00376 0.96766 1.21092 0.94218 1.02212 0.98076 1.21072 0.99991 0.99444 0.92022 1.21368 0.92679 1.00457 0.99501 1.17648 0.91378 1.00258 0.84960 1.43763 1.26229 1.55221 1.07356 1.21348 0.86979 0.76686 0.84993 1.90703 1.20856 1.42635 1.84574 1.21829 1.00043 1.03847 0.92038 1.21473 0.98811 1.00470 0.93435 1.21650 0.98551 1.00419 0.94155 1.19094 0.95324 0.95540 0.91772 1.21278 1.03816 1.35893 0.94888 0.92755 1.25043 0.95024 0.95502 0.99013 1.69975 1.17374 1.37492 1.28635 0.86610 0.79914 0.78358 0.83195 1.20700 1.21247 1.19922 0.92626 0.92460 0.92548 0.92186 0.91621 0.90652 0.91009 0.85990 0.86178 0.85858 0.84166 0.75505 0.88799 0.88785 0.91686 0.91676 0.93420 0.93431 0.96583 0.96576 0.93030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.91 37.16 0.37 -0.46 16 2 C -0.12 -0.74 5.84 -26.73 -0.16 -0.90 16 3 C -0.08 -0.59 4.75 -27.88 -0.13 -0.73 16 4 C -0.11 -1.09 5.15 -104.43 -0.54 -1.63 16 5 C -0.10 -0.91 9.68 -39.61 -0.38 -1.30 16 6 C -0.14 -1.26 10.04 -39.55 -0.40 -1.66 16 7 C -0.11 -1.14 10.04 -39.61 -0.40 -1.53 16 8 C -0.12 -1.53 8.70 -39.39 -0.34 -1.87 16 9 C 0.15 1.78 6.29 -83.69 -0.53 1.25 16 10 N -0.68 -7.33 4.77 -9.86 -0.05 -7.38 16 11 C 0.51 7.02 7.68 -10.98 -0.08 6.94 16 12 O -0.51 -9.05 13.39 5.55 0.07 -8.98 16 13 C -0.14 -1.76 5.70 -27.88 -0.16 -1.92 16 14 C -0.10 -1.82 4.50 -26.73 -0.12 -1.94 16 15 C -0.11 -2.24 5.15 -26.73 -0.14 -2.38 16 16 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 17 C -0.52 -14.99 9.11 -34.44 -0.31 -15.30 16 18 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 19 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 20 N -0.90 -27.57 13.29 55.43 0.74 -26.84 16 21 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 25 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 26 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.06 0.37 7.26 -51.93 -0.38 0.00 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.49 8.05 -51.93 -0.42 0.07 16 31 H 0.07 0.54 7.45 -51.93 -0.39 0.15 16 32 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 33 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 34 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 35 H 0.14 2.03 6.20 -52.49 -0.33 1.71 16 36 H 0.41 3.19 7.03 -40.82 -0.29 2.90 16 37 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 39 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 40 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 41 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 42 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 43 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 369.11 15.07 5.56 5.56 Total: -1.00 -33.46 369.11 -9.92 -43.38 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -7.67 Total: -1.12 kcal Atomic # 6 Polarization: -17.96 SS G_CDS: -3.56 Total: -21.52 kcal Atomic # 7 Polarization: -34.90 SS G_CDS: 0.69 Total: -34.21 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: 0.07 Total: -8.98 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.46 -9.92 -43.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588281696.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.709 kcal (2) G-P(sol) polarization free energy of solvation -33.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds