Wall clock time and date at job start Tue Mar 31 2020 06:29:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46885 * 2 1 4 4 C 1.50703 * 109.47129 * 180.02562 * 3 2 1 5 5 C 1.38138 * 120.03219 * 264.99965 * 4 3 2 6 6 C 1.38253 * 120.07057 * 179.97438 * 5 4 3 7 7 C 1.38308 * 120.14072 * 0.03450 * 6 5 4 8 8 C 1.38087 * 120.07267 * 0.02562 * 7 6 5 9 9 C 1.38843 * 120.03629 * 84.71875 * 4 3 2 10 10 N 1.39925 * 120.07349 * 0.02562 * 9 4 3 11 11 C 1.34780 * 120.00040 * 145.02614 * 10 9 4 12 12 O 1.21285 * 119.99969 * 4.49012 * 11 10 9 13 13 C 1.50700 * 119.99713 * 184.48984 * 11 10 9 14 14 C 1.53004 * 109.46985 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.47103 * 180.02562 * 14 13 11 16 16 C 1.53004 * 109.47103 * 179.97438 * 15 14 13 17 17 C 1.50700 * 109.46985 * 179.97438 * 16 15 14 18 18 H 1.07998 * 120.00305 * 359.97438 * 17 16 15 19 19 C 1.37874 * 119.99780 * 180.02562 * 17 16 15 20 20 N 1.31520 * 120.00215 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 120.00184 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47130 * 89.99734 * 21 19 17 23 23 H 1.48497 * 109.47605 * 209.99839 * 21 19 17 24 24 H 1.48505 * 109.47326 * 329.99867 * 21 19 17 25 25 H 1.08995 * 109.47258 * 300.00407 * 1 2 3 26 26 H 1.08998 * 109.47118 * 60.00689 * 1 2 3 27 27 H 1.09006 * 109.47005 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47258 * 239.99593 * 2 1 3 29 29 H 1.09000 * 109.46833 * 119.99775 * 2 1 3 30 30 H 1.08995 * 109.47505 * 59.99744 * 3 2 1 31 31 H 1.09000 * 109.47201 * 299.99550 * 3 2 1 32 32 H 1.07999 * 119.96438 * 359.96978 * 5 4 3 33 33 H 1.07997 * 119.93185 * 180.02562 * 6 5 4 34 34 H 1.08000 * 119.96656 * 179.97438 * 7 6 5 35 35 H 1.07996 * 120.04031 * 179.97438 * 8 7 6 36 36 H 0.97003 * 119.99895 * 325.02899 * 10 9 4 37 37 H 1.09002 * 109.47105 * 300.00103 * 13 11 10 38 38 H 1.09000 * 109.47131 * 60.00418 * 13 11 10 39 39 H 1.09002 * 109.47104 * 299.99884 * 14 13 11 40 40 H 1.09000 * 109.47023 * 60.00133 * 14 13 11 41 41 H 1.09002 * 109.46808 * 299.99774 * 15 14 13 42 42 H 1.08999 * 109.47539 * 59.99516 * 15 14 13 43 43 H 1.08990 * 109.46968 * 299.99999 * 16 15 14 44 44 H 1.09000 * 109.47023 * 59.99842 * 16 15 14 45 45 H 0.96995 * 120.00046 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4426 -0.0006 5 6 4.2389 1.5466 1.1905 6 6 5.6214 1.5463 1.1908 7 6 6.3162 1.4424 -0.0005 8 6 5.6305 1.3393 -1.1947 9 6 4.2415 1.3321 -1.1978 10 7 3.5437 1.2212 -2.4056 11 6 4.0368 1.7900 -3.5235 12 8 5.1237 2.3277 -3.5016 13 6 3.2376 1.7578 -4.8008 14 6 4.0185 2.4671 -5.9090 15 6 3.2069 2.4350 -7.2055 16 6 3.9875 3.1449 -8.3135 17 6 3.1883 3.1127 -9.5908 18 1 2.2207 2.6335 -9.6104 19 6 3.6930 3.6941 -10.7345 20 7 4.8716 4.2772 -10.7108 21 14 2.7028 3.6537 -12.3179 22 1 1.8335 4.8555 -12.3889 23 1 3.6274 3.6423 -13.4799 24 1 1.8602 2.4311 -12.3438 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9564 0.8899 31 1 1.6767 1.9563 -0.8900 32 1 3.6992 1.6285 2.1224 33 1 6.1600 1.6273 2.1234 34 1 7.3962 1.4428 0.0030 35 1 6.1735 1.2587 -2.1247 36 1 2.7050 0.7349 -2.4382 37 1 3.0563 0.7226 -5.0899 38 1 2.2848 2.2641 -4.6460 39 1 4.2002 3.5023 -5.6200 40 1 4.9711 1.9604 -6.0636 41 1 3.0249 1.3999 -7.4946 42 1 2.2544 2.9418 -7.0506 43 1 4.1692 4.1798 -8.0242 44 1 4.9402 2.6384 -8.4686 45 1 5.2265 4.6866 -11.5154 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588281696.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:19 Heat of formation + Delta-G solvation = -70.188296 kcal Electronic energy + Delta-G solvation = -21965.500680 eV Core-core repulsion = 18752.445700 eV Total energy + Delta-G solvation = -3213.054980 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.73281 -39.75438 -36.70193 -36.24983 -35.48930 -34.63348 -31.95132 -31.87349 -30.36163 -27.65208 -27.08502 -24.78070 -23.50175 -22.93044 -21.77929 -21.67627 -21.20765 -18.72183 -18.40309 -17.92600 -17.09435 -16.79115 -16.52381 -16.24864 -15.69736 -15.36910 -15.12779 -14.81566 -14.56280 -14.55148 -14.41236 -13.85031 -13.60563 -13.43321 -13.29879 -13.09872 -12.82897 -12.79055 -12.40781 -12.34791 -12.17719 -12.14824 -12.02977 -11.87463 -11.55229 -11.40107 -11.36135 -11.29120 -11.12956 -10.74727 -10.55317 -9.68349 -9.07187 -8.19067 -6.31282 0.30278 0.44985 1.40216 1.42486 1.53525 1.56437 2.04191 2.41790 2.84650 3.13772 3.67897 3.79114 3.90964 3.99818 4.12099 4.15059 4.23561 4.28486 4.42986 4.50640 4.59137 4.61079 4.66244 4.71177 4.80770 4.82229 4.86809 4.90145 5.04412 5.11039 5.17042 5.26005 5.30749 5.32168 5.35725 5.38679 5.48839 5.50964 5.56495 5.61831 5.63213 5.77735 5.87920 6.11337 6.24884 6.39361 6.87487 7.11402 7.38492 8.93282 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.023357 B = 0.002545 C = 0.002325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.476723 B =10997.716966 C =12042.294272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.116 4.116 3 C -0.079 4.079 4 C -0.110 4.110 5 C -0.103 4.103 6 C -0.134 4.134 7 C -0.120 4.120 8 C -0.148 4.148 9 C 0.129 3.871 10 N -0.661 5.661 11 C 0.510 3.490 12 O -0.563 6.563 13 C -0.126 4.126 14 C -0.096 4.096 15 C -0.095 4.095 16 C 0.018 3.982 17 C -0.541 4.541 18 H 0.067 0.933 19 C -0.007 4.007 20 N -0.939 5.939 21 Si 0.969 3.031 22 H -0.272 1.272 23 H -0.284 1.284 24 H -0.259 1.259 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.066 0.934 30 H 0.088 0.912 31 H 0.070 0.930 32 H 0.152 0.848 33 H 0.147 0.853 34 H 0.133 0.867 35 H 0.112 0.888 36 H 0.424 0.576 37 H 0.124 0.876 38 H 0.123 0.877 39 H 0.043 0.957 40 H 0.044 0.956 41 H 0.062 0.938 42 H 0.062 0.938 43 H -0.016 1.016 44 H -0.016 1.016 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.374 -10.564 28.168 31.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.154 4.154 3 C -0.116 4.116 4 C -0.112 4.112 5 C -0.122 4.122 6 C -0.152 4.152 7 C -0.138 4.138 8 C -0.168 4.168 9 C 0.035 3.965 10 N -0.308 5.308 11 C 0.300 3.700 12 O -0.441 6.441 13 C -0.165 4.165 14 C -0.135 4.135 15 C -0.133 4.133 16 C -0.019 4.019 17 C -0.579 4.579 18 H 0.085 0.915 19 C -0.205 4.205 20 N -0.579 5.579 21 Si 0.793 3.207 22 H -0.197 1.197 23 H -0.210 1.210 24 H -0.183 1.183 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.085 0.915 30 H 0.107 0.893 31 H 0.088 0.912 32 H 0.169 0.831 33 H 0.165 0.835 34 H 0.150 0.850 35 H 0.130 0.870 36 H 0.263 0.737 37 H 0.142 0.858 38 H 0.141 0.859 39 H 0.062 0.938 40 H 0.063 0.937 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.002 0.998 44 H 0.003 0.997 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.535 -10.094 28.008 30.710 hybrid contribution 0.103 0.188 -1.234 1.253 sum -7.433 -9.906 26.773 29.499 Atomic orbital electron populations 1.21791 0.94647 1.02206 1.02384 1.21503 0.96450 0.95082 1.02346 1.20639 0.88808 0.98292 1.03878 1.19976 0.97003 1.02673 0.91577 1.21224 0.94237 0.99059 0.97645 1.21437 0.94717 1.00709 0.98383 1.21269 1.00735 0.99724 0.92082 1.21328 0.93624 1.02624 0.99252 1.17827 0.91206 1.01663 0.85821 1.43510 1.26433 1.54375 1.06500 1.21487 0.86355 0.76250 0.85928 1.90701 1.22955 1.45043 1.85351 1.21704 0.99881 1.05238 0.89696 1.21255 0.98349 0.99766 0.94085 1.21443 0.98326 1.00403 0.93105 1.19056 0.94827 0.94101 0.93894 1.21760 1.04447 1.35867 0.95827 0.91506 1.26100 0.96149 0.94890 1.03316 1.70134 1.19419 1.38492 1.29888 0.85382 0.78277 0.79134 0.77858 1.19696 1.20986 1.18256 0.92184 0.92339 0.92232 0.92395 0.91514 0.89323 0.91156 0.83077 0.83489 0.84951 0.87019 0.73654 0.85824 0.85860 0.93824 0.93709 0.91927 0.91945 0.99764 0.99733 0.92860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.91 71.98 0.71 -0.52 16 2 C -0.12 -1.13 5.84 30.59 0.18 -0.95 16 3 C -0.08 -0.94 4.75 29.85 0.14 -0.80 16 4 C -0.11 -1.93 5.15 -19.74 -0.10 -2.03 16 5 C -0.10 -1.58 9.68 22.25 0.22 -1.37 16 6 C -0.13 -2.22 10.04 22.29 0.22 -1.99 16 7 C -0.12 -2.56 10.04 22.25 0.22 -2.34 16 8 C -0.15 -3.96 8.70 22.39 0.19 -3.76 16 9 C 0.13 2.98 6.29 38.15 0.24 3.22 16 10 N -0.66 -13.76 4.77 -303.50 -1.45 -15.21 16 11 C 0.51 14.04 7.68 87.66 0.67 14.71 16 12 O -0.56 -20.97 13.39 -3.04 -0.04 -21.01 16 13 C -0.13 -3.02 5.70 29.85 0.17 -2.85 16 14 C -0.10 -3.44 4.50 30.59 0.14 -3.30 16 15 C -0.10 -3.85 5.15 30.59 0.16 -3.69 16 16 C 0.02 1.01 4.97 29.85 0.15 1.16 16 17 C -0.54 -31.40 9.11 25.60 0.23 -31.17 16 18 H 0.07 3.62 7.74 -2.91 -0.02 3.60 16 19 C -0.01 -0.44 5.46 84.65 0.46 0.02 16 20 N -0.94 -59.39 13.29 21.45 0.28 -59.11 16 21 Si 0.97 44.87 29.54 68.60 2.03 46.90 16 22 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 23 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 24 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 25 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 26 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 27 H 0.06 0.45 8.14 -2.38 -0.02 0.43 16 28 H 0.06 0.59 7.26 -2.39 -0.02 0.57 16 29 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.09 0.85 8.05 -2.39 -0.02 0.83 16 31 H 0.07 0.88 7.45 -2.39 -0.02 0.86 16 32 H 0.15 1.42 8.06 -2.91 -0.02 1.39 16 33 H 0.15 1.59 8.06 -2.91 -0.02 1.57 16 34 H 0.13 2.42 8.06 -2.91 -0.02 2.39 16 35 H 0.11 3.58 6.20 -2.91 -0.02 3.56 16 36 H 0.42 5.80 7.03 -92.71 -0.65 5.15 16 37 H 0.12 2.29 8.14 -2.39 -0.02 2.27 16 38 H 0.12 2.30 8.14 -2.39 -0.02 2.28 16 39 H 0.04 1.72 8.10 -2.39 -0.02 1.70 16 40 H 0.04 1.75 8.10 -2.39 -0.02 1.73 16 41 H 0.06 2.34 8.14 -2.39 -0.02 2.33 16 42 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 43 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 44 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 45 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 Total: -1.00 -76.08 369.11 5.13 -70.95 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: 0.30 Total: 13.15 kcal Atomic # 6 Polarization: -39.68 SS G_CDS: 4.01 Total: -35.67 kcal Atomic # 7 Polarization: -73.15 SS G_CDS: -1.16 Total: -74.32 kcal Atomic # 8 Polarization: -20.97 SS G_CDS: -0.04 Total: -21.01 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -76.08 5.13 -70.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588281696.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.759 kcal (2) G-P(sol) polarization free energy of solvation -76.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds