Wall clock time and date at job start Tue Mar 31 2020 06:29:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47338 * 2 1 4 4 N 1.46501 * 109.47094 * 239.99273 * 2 1 3 5 5 C 1.34782 * 119.99568 * 61.13268 * 4 2 1 6 6 O 1.21285 * 119.99769 * 359.97438 * 5 4 2 7 7 C 1.50699 * 120.00072 * 180.02562 * 5 4 2 8 8 C 1.52996 * 109.47115 * 180.02562 * 7 5 4 9 9 C 1.53004 * 109.46731 * 179.97438 * 8 7 5 10 10 C 1.53006 * 109.46708 * 179.97438 * 9 8 7 11 11 C 1.50699 * 109.47113 * 179.97438 * 10 9 8 12 12 H 1.08001 * 119.99540 * 0.02562 * 11 10 9 13 13 C 1.37869 * 120.00142 * 179.97438 * 11 10 9 14 14 N 1.31513 * 120.00309 * 0.02562 * 13 11 10 15 15 Si 1.86808 * 120.00051 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47059 * 90.00405 * 15 13 11 17 17 H 1.48498 * 109.47133 * 210.00514 * 15 13 11 18 18 H 1.48502 * 109.47094 * 329.99992 * 15 13 11 19 19 C 1.50705 * 109.46873 * 120.00087 * 2 1 3 20 20 C 1.38232 * 120.00185 * 144.72768 * 19 2 1 21 21 C 1.38229 * 120.00169 * 179.97438 * 20 19 2 22 22 C 1.38238 * 119.99939 * 359.97438 * 21 20 19 23 23 C 1.38231 * 120.00006 * 0.27880 * 22 21 20 24 24 C 1.38237 * 119.99663 * 324.70117 * 19 2 1 25 25 H 1.09006 * 109.46752 * 300.00671 * 1 2 3 26 26 H 1.09004 * 109.46837 * 59.99558 * 1 2 3 27 27 H 1.08995 * 109.47771 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46618 * 179.97438 * 3 2 1 29 29 H 1.08994 * 109.46813 * 299.99842 * 3 2 1 30 30 H 1.08997 * 109.47173 * 59.99818 * 3 2 1 31 31 H 0.96994 * 120.00664 * 241.12724 * 4 2 1 32 32 H 1.08998 * 109.46546 * 299.99558 * 7 5 4 33 33 H 1.08994 * 109.46940 * 59.99167 * 7 5 4 34 34 H 1.08998 * 109.46964 * 299.99193 * 8 7 5 35 35 H 1.08991 * 109.47481 * 59.99725 * 8 7 5 36 36 H 1.08998 * 109.46898 * 299.99429 * 9 8 7 37 37 H 1.08999 * 109.47011 * 60.00001 * 9 8 7 38 38 H 1.09003 * 109.47239 * 300.00091 * 10 9 8 39 39 H 1.09004 * 109.46937 * 59.99974 * 10 9 8 40 40 H 0.96995 * 120.00215 * 179.97438 * 14 13 11 41 41 H 1.08002 * 119.99979 * 359.97236 * 20 19 2 42 42 H 1.07998 * 120.00226 * 179.97438 * 21 20 19 43 43 H 1.07999 * 119.99796 * 180.02562 * 22 21 20 44 44 H 1.08002 * 120.00302 * 179.72218 * 23 22 21 45 45 H 1.08000 * 120.00720 * 0.02562 * 24 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6908 -1.1961 5 6 1.7116 -0.2172 -2.4201 6 8 1.0310 0.7805 -2.5313 7 6 2.2134 -0.9280 -3.6506 8 6 1.7274 -0.1901 -4.8996 9 6 2.2374 -0.9115 -6.1488 10 6 1.7509 -0.1739 -7.3980 11 6 2.2537 -0.8840 -8.6284 12 1 2.8594 -1.7727 -8.5293 13 6 1.9397 -0.3998 -9.8805 14 7 1.2018 0.6821 -10.0011 15 14 2.5624 -1.2804 -11.4057 16 1 1.5717 -2.3037 -11.8256 17 1 2.7532 -0.2970 -12.5019 18 1 3.8576 -1.9405 -11.1021 19 6 2.0323 -0.7105 1.2305 20 6 3.1841 -1.4721 1.1671 21 6 3.6451 -2.1233 2.2959 22 6 2.9546 -2.0125 3.4883 23 6 1.7999 -1.2551 3.5504 24 6 1.3414 -0.6000 2.4227 25 1 -0.3633 0.5140 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 3.1301 1.4424 0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.6768 1.9563 0.8899 31 1 2.5624 -1.4888 -1.1072 32 1 3.3032 -0.9459 -3.6406 33 1 1.8333 -1.9494 -3.6604 34 1 0.6376 -0.1718 -4.9098 35 1 2.1079 0.8312 -4.8894 36 1 3.3272 -0.9295 -6.1385 37 1 1.8572 -1.9330 -6.1592 38 1 0.6610 -0.1562 -7.4081 39 1 2.1308 0.8477 -7.3877 40 1 0.9812 1.0230 -10.8820 41 1 3.7239 -1.5584 0.2356 42 1 4.5448 -2.7187 2.2463 43 1 3.3150 -2.5209 4.3703 44 1 1.2579 -1.1721 4.4809 45 1 0.4415 -0.0049 2.4724 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588899486.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:22 Heat of formation + Delta-G solvation = -37.614353 kcal Electronic energy + Delta-G solvation = -22177.597769 eV Core-core repulsion = 18965.955301 eV Total energy + Delta-G solvation = -3211.642468 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.71894 -39.16528 -36.25638 -34.78060 -32.80845 -32.28145 -31.20176 -30.09860 -29.29296 -27.43454 -25.68849 -23.89038 -22.83233 -22.27782 -20.55461 -19.94121 -19.64887 -17.96579 -16.46627 -16.22233 -16.00384 -15.61423 -15.27542 -14.82718 -14.45015 -14.22436 -14.00610 -13.86004 -13.71036 -13.66828 -12.83130 -12.60263 -12.41221 -12.32510 -12.24903 -11.86507 -11.65486 -11.56604 -11.43067 -11.33310 -11.02405 -10.95601 -10.50824 -10.47808 -10.38251 -9.59683 -9.58778 -9.35012 -9.29478 -9.17471 -8.96570 -8.92854 -8.28743 -5.93483 -3.95923 0.96075 1.02477 2.75840 3.08946 3.35174 3.41125 3.43095 3.44385 4.18766 4.48775 4.50367 4.61637 4.74819 4.80251 4.93395 4.97775 5.11659 5.19302 5.34157 5.40348 5.42293 5.46305 5.52063 5.59773 5.61876 5.71263 5.76614 5.90080 6.01068 6.10086 6.14830 6.16432 6.18780 6.23140 6.33551 6.50312 6.58846 6.60875 6.87116 7.05037 7.22633 7.49550 7.76145 7.92451 8.08131 8.31533 8.49991 9.11823 9.67611 11.17827 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.037818 B = 0.002337 C = 0.002245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.203130 B =11976.134920 C =12468.093292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.215 3.785 3 C -0.159 4.159 4 N -0.733 5.733 5 C 0.516 3.484 6 O -0.530 6.530 7 C -0.140 4.140 8 C -0.102 4.102 9 C -0.110 4.110 10 C 0.020 3.980 11 C -0.520 4.520 12 H 0.054 0.946 13 C 0.055 3.945 14 N -0.895 5.895 15 Si 0.891 3.109 16 H -0.281 1.281 17 H -0.287 1.287 18 H -0.274 1.274 19 C -0.080 4.080 20 C -0.119 4.119 21 C -0.115 4.115 22 C -0.124 4.124 23 C -0.117 4.117 24 C -0.110 4.110 25 H 0.064 0.936 26 H 0.084 0.916 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.087 0.913 30 H 0.061 0.939 31 H 0.398 0.602 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.046 0.954 37 H 0.046 0.954 38 H 0.016 0.984 39 H 0.016 0.984 40 H 0.260 0.740 41 H 0.123 0.877 42 H 0.123 0.877 43 H 0.121 0.879 44 H 0.123 0.877 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.996 -4.923 29.624 30.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.129 3.871 3 C -0.217 4.217 4 N -0.388 5.388 5 C 0.303 3.697 6 O -0.405 6.405 7 C -0.180 4.180 8 C -0.140 4.140 9 C -0.148 4.148 10 C -0.017 4.017 11 C -0.558 4.558 12 H 0.072 0.928 13 C -0.146 4.146 14 N -0.535 5.535 15 Si 0.719 3.281 16 H -0.207 1.207 17 H -0.213 1.213 18 H -0.199 1.199 19 C -0.081 4.081 20 C -0.138 4.138 21 C -0.133 4.133 22 C -0.142 4.142 23 C -0.135 4.135 24 C -0.128 4.128 25 H 0.082 0.918 26 H 0.103 0.897 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.106 0.894 30 H 0.080 0.920 31 H 0.234 0.766 32 H 0.107 0.893 33 H 0.108 0.892 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.034 0.966 39 H 0.034 0.966 40 H 0.069 0.931 41 H 0.141 0.859 42 H 0.141 0.859 43 H 0.139 0.861 44 H 0.141 0.859 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 2.422 -4.071 29.394 29.774 hybrid contribution 0.655 -0.935 -0.744 1.363 sum 3.077 -5.006 28.650 29.247 Atomic orbital electron populations 1.22282 0.93537 1.02483 1.03738 1.19067 0.94308 0.91965 0.81793 1.22226 1.01110 0.94510 1.03851 1.46394 1.55863 1.31251 1.05275 1.21035 0.79483 0.84715 0.84422 1.90639 1.37735 1.25503 1.86657 1.21809 1.02356 1.00798 0.93026 1.21435 1.01304 0.99307 0.91952 1.21652 0.99431 0.98909 0.94817 1.19098 0.96520 0.95533 0.90584 1.21284 1.32088 1.11257 0.91160 0.92779 1.25044 0.95338 0.95094 0.99144 1.69973 1.37879 1.22247 1.23372 0.86612 0.79190 0.79393 0.82895 1.20719 1.21268 1.19936 1.19926 0.95558 0.97736 0.94832 1.20973 0.96163 0.97788 0.98829 1.21148 0.99894 0.99404 0.92825 1.21186 0.95727 0.99320 0.97957 1.21165 0.96597 0.97358 0.98340 1.21054 0.99859 0.99798 0.92127 0.91753 0.89741 0.92486 0.92621 0.89442 0.91956 0.76617 0.89259 0.89235 0.91806 0.91807 0.93521 0.93528 0.96604 0.96596 0.93062 0.85928 0.85877 0.86082 0.85919 0.85555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.69 7.86 37.16 0.29 -1.40 16 2 C 0.21 2.16 0.89 -132.97 -0.12 2.04 16 3 C -0.16 -1.71 8.37 37.16 0.31 -1.40 16 4 N -0.73 -7.61 4.88 -48.68 -0.24 -7.85 16 5 C 0.52 7.00 7.25 -10.98 -0.08 6.92 16 6 O -0.53 -9.01 12.19 5.55 0.07 -8.94 16 7 C -0.14 -1.85 5.70 -27.89 -0.16 -2.01 16 8 C -0.10 -1.82 4.50 -26.73 -0.12 -1.94 16 9 C -0.11 -2.29 5.15 -26.73 -0.14 -2.43 16 10 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 11 C -0.52 -15.08 9.11 -34.44 -0.31 -15.39 16 12 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 13 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 14 N -0.90 -27.67 13.29 55.43 0.74 -26.93 16 15 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 16 16 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 17 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 18 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 19 C -0.08 -0.70 4.80 -104.62 -0.50 -1.20 16 20 C -0.12 -0.95 9.02 -39.59 -0.36 -1.30 16 21 C -0.11 -0.81 10.05 -39.58 -0.40 -1.21 16 22 C -0.12 -0.84 10.05 -39.58 -0.40 -1.23 16 23 C -0.12 -0.81 10.05 -39.58 -0.40 -1.21 16 24 C -0.11 -0.87 9.15 -39.58 -0.36 -1.23 16 25 H 0.06 0.54 6.52 -51.93 -0.34 0.21 16 26 H 0.08 1.10 6.25 -51.93 -0.32 0.78 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.09 1.16 6.09 -51.93 -0.32 0.85 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.40 3.20 6.40 -40.82 -0.26 2.94 16 32 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.06 1.22 8.10 -51.93 -0.42 0.79 16 35 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 36 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 41 H 0.12 0.82 6.42 -52.49 -0.34 0.49 16 42 H 0.12 0.64 8.06 -52.49 -0.42 0.22 16 43 H 0.12 0.58 8.06 -52.49 -0.42 0.15 16 44 H 0.12 0.61 8.06 -52.49 -0.42 0.18 16 45 H 0.13 0.85 6.33 -52.49 -0.33 0.52 16 LS Contribution 361.30 15.07 5.44 5.44 Total: -1.00 -33.29 361.30 -9.35 -42.64 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -7.37 Total: -0.27 kcal Atomic # 6 Polarization: -18.13 SS G_CDS: -2.98 Total: -21.10 kcal Atomic # 7 Polarization: -35.28 SS G_CDS: 0.50 Total: -34.78 kcal Atomic # 8 Polarization: -9.01 SS G_CDS: 0.07 Total: -8.94 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.29 -9.35 -42.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588899486.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.028 kcal (2) G-P(sol) polarization free energy of solvation -33.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds