Wall clock time and date at job start Tue Mar 31 2020 06:29:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47338 * 2 1 4 4 N 1.46501 * 109.47094 * 239.99273 * 2 1 3 5 5 C 1.34782 * 119.99568 * 61.13268 * 4 2 1 6 6 O 1.21285 * 119.99769 * 359.97438 * 5 4 2 7 7 C 1.50699 * 120.00072 * 180.02562 * 5 4 2 8 8 C 1.52996 * 109.47115 * 180.02562 * 7 5 4 9 9 C 1.53004 * 109.46731 * 179.97438 * 8 7 5 10 10 C 1.53006 * 109.46708 * 179.97438 * 9 8 7 11 11 C 1.50699 * 109.47113 * 179.97438 * 10 9 8 12 12 H 1.08001 * 119.99540 * 0.02562 * 11 10 9 13 13 C 1.37869 * 120.00142 * 179.97438 * 11 10 9 14 14 N 1.31513 * 120.00309 * 0.02562 * 13 11 10 15 15 Si 1.86808 * 120.00051 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47059 * 90.00405 * 15 13 11 17 17 H 1.48498 * 109.47133 * 210.00514 * 15 13 11 18 18 H 1.48502 * 109.47094 * 329.99992 * 15 13 11 19 19 C 1.50705 * 109.46873 * 120.00087 * 2 1 3 20 20 C 1.38232 * 120.00185 * 144.72768 * 19 2 1 21 21 C 1.38229 * 120.00169 * 179.97438 * 20 19 2 22 22 C 1.38238 * 119.99939 * 359.97438 * 21 20 19 23 23 C 1.38231 * 120.00006 * 0.27880 * 22 21 20 24 24 C 1.38237 * 119.99663 * 324.70117 * 19 2 1 25 25 H 1.09006 * 109.46752 * 300.00671 * 1 2 3 26 26 H 1.09004 * 109.46837 * 59.99558 * 1 2 3 27 27 H 1.08995 * 109.47771 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46618 * 179.97438 * 3 2 1 29 29 H 1.08994 * 109.46813 * 299.99842 * 3 2 1 30 30 H 1.08997 * 109.47173 * 59.99818 * 3 2 1 31 31 H 0.96994 * 120.00664 * 241.12724 * 4 2 1 32 32 H 1.08998 * 109.46546 * 299.99558 * 7 5 4 33 33 H 1.08994 * 109.46940 * 59.99167 * 7 5 4 34 34 H 1.08998 * 109.46964 * 299.99193 * 8 7 5 35 35 H 1.08991 * 109.47481 * 59.99725 * 8 7 5 36 36 H 1.08998 * 109.46898 * 299.99429 * 9 8 7 37 37 H 1.08999 * 109.47011 * 60.00001 * 9 8 7 38 38 H 1.09003 * 109.47239 * 300.00091 * 10 9 8 39 39 H 1.09004 * 109.46937 * 59.99974 * 10 9 8 40 40 H 0.96995 * 120.00215 * 179.97438 * 14 13 11 41 41 H 1.08002 * 119.99979 * 359.97236 * 20 19 2 42 42 H 1.07998 * 120.00226 * 179.97438 * 21 20 19 43 43 H 1.07999 * 119.99796 * 180.02562 * 22 21 20 44 44 H 1.08002 * 120.00302 * 179.72218 * 23 22 21 45 45 H 1.08000 * 120.00720 * 0.02562 * 24 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6908 -1.1961 5 6 1.7116 -0.2172 -2.4201 6 8 1.0310 0.7805 -2.5313 7 6 2.2134 -0.9280 -3.6506 8 6 1.7274 -0.1901 -4.8996 9 6 2.2374 -0.9115 -6.1488 10 6 1.7509 -0.1739 -7.3980 11 6 2.2537 -0.8840 -8.6284 12 1 2.8594 -1.7727 -8.5293 13 6 1.9397 -0.3998 -9.8805 14 7 1.2018 0.6821 -10.0011 15 14 2.5624 -1.2804 -11.4057 16 1 1.5717 -2.3037 -11.8256 17 1 2.7532 -0.2970 -12.5019 18 1 3.8576 -1.9405 -11.1021 19 6 2.0323 -0.7105 1.2305 20 6 3.1841 -1.4721 1.1671 21 6 3.6451 -2.1233 2.2959 22 6 2.9546 -2.0125 3.4883 23 6 1.7999 -1.2551 3.5504 24 6 1.3414 -0.6000 2.4227 25 1 -0.3633 0.5140 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 3.1301 1.4424 0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.6768 1.9563 0.8899 31 1 2.5624 -1.4888 -1.1072 32 1 3.3032 -0.9459 -3.6406 33 1 1.8333 -1.9494 -3.6604 34 1 0.6376 -0.1718 -4.9098 35 1 2.1079 0.8312 -4.8894 36 1 3.3272 -0.9295 -6.1385 37 1 1.8572 -1.9330 -6.1592 38 1 0.6610 -0.1562 -7.4081 39 1 2.1308 0.8477 -7.3877 40 1 0.9812 1.0230 -10.8820 41 1 3.7239 -1.5584 0.2356 42 1 4.5448 -2.7187 2.2463 43 1 3.3150 -2.5209 4.3703 44 1 1.2579 -1.1721 4.4809 45 1 0.4415 -0.0049 2.4724 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588899486.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:21 Heat of formation + Delta-G solvation = -56.406154 kcal Electronic energy + Delta-G solvation = -22178.412643 eV Core-core repulsion = 18965.955301 eV Total energy + Delta-G solvation = -3212.457342 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.56384 -39.96321 -37.21095 -36.42210 -34.61630 -33.39864 -31.82229 -31.27600 -30.42625 -28.28224 -27.46084 -24.93064 -23.84314 -23.27417 -21.85752 -21.30871 -20.56178 -18.76689 -18.40644 -17.29661 -16.89072 -16.78284 -16.49297 -15.85226 -15.63769 -15.41748 -14.98860 -14.66741 -14.64840 -14.51785 -14.28832 -13.87343 -13.59956 -13.41213 -13.30015 -13.10893 -12.97462 -12.84866 -12.72244 -12.33593 -12.30987 -12.13104 -12.07505 -11.94254 -11.67690 -11.36648 -11.32794 -11.10198 -10.54752 -10.53158 -10.19836 -9.81816 -9.60805 -8.18352 -6.30523 0.40484 0.50160 1.40309 1.42711 1.53740 1.70175 2.18317 2.42220 2.88172 3.14173 3.48077 3.84876 3.89686 4.06847 4.08150 4.14619 4.18441 4.19763 4.30829 4.55631 4.59841 4.66587 4.69247 4.70328 4.79365 4.83514 4.86163 4.87680 4.90584 5.05044 5.16321 5.20880 5.22628 5.29242 5.33970 5.38757 5.47671 5.57768 5.57903 5.64479 5.73499 5.78953 5.88658 6.09792 6.25867 6.60637 6.87927 7.32290 7.38993 8.93846 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.037818 B = 0.002337 C = 0.002245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.203130 B =11976.134920 C =12468.093292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.215 3.785 3 C -0.155 4.155 4 N -0.716 5.716 5 C 0.514 3.486 6 O -0.571 6.571 7 C -0.130 4.130 8 C -0.093 4.093 9 C -0.096 4.096 10 C 0.019 3.981 11 C -0.541 4.541 12 H 0.066 0.934 13 C -0.008 4.008 14 N -0.938 5.938 15 Si 0.970 3.030 16 H -0.272 1.272 17 H -0.284 1.284 18 H -0.259 1.259 19 C -0.092 4.092 20 C -0.129 4.129 21 C -0.121 4.121 22 C -0.127 4.127 23 C -0.122 4.122 24 C -0.120 4.120 25 H 0.082 0.918 26 H 0.053 0.947 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.075 0.925 31 H 0.412 0.588 32 H 0.116 0.884 33 H 0.115 0.885 34 H 0.043 0.957 35 H 0.043 0.957 36 H 0.060 0.940 37 H 0.059 0.941 38 H -0.016 1.016 39 H -0.015 1.015 40 H 0.263 0.737 41 H 0.132 0.868 42 H 0.142 0.858 43 H 0.142 0.858 44 H 0.142 0.858 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.658 -7.363 31.143 32.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.129 3.871 3 C -0.213 4.213 4 N -0.371 5.371 5 C 0.302 3.698 6 O -0.450 6.450 7 C -0.170 4.170 8 C -0.132 4.132 9 C -0.133 4.133 10 C -0.018 4.018 11 C -0.579 4.579 12 H 0.084 0.916 13 C -0.205 4.205 14 N -0.578 5.578 15 Si 0.794 3.206 16 H -0.197 1.197 17 H -0.209 1.209 18 H -0.183 1.183 19 C -0.093 4.093 20 C -0.147 4.147 21 C -0.139 4.139 22 C -0.145 4.145 23 C -0.140 4.140 24 C -0.138 4.138 25 H 0.100 0.900 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.094 0.906 31 H 0.250 0.750 32 H 0.134 0.866 33 H 0.133 0.867 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.003 0.997 39 H 0.003 0.997 40 H 0.071 0.929 41 H 0.149 0.851 42 H 0.160 0.840 43 H 0.160 0.840 44 H 0.160 0.840 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 4.108 -6.549 30.952 31.903 hybrid contribution 0.118 -0.145 -1.136 1.152 sum 4.226 -6.694 29.815 30.849 Atomic orbital electron populations 1.22230 0.93983 1.02349 1.03124 1.19056 0.94003 0.91724 0.82279 1.22163 1.01099 0.95057 1.03012 1.46234 1.55070 1.31329 1.04500 1.21075 0.79068 0.84194 0.85420 1.90646 1.39723 1.27379 1.87281 1.21685 1.03920 1.01034 0.90353 1.21217 0.99940 0.98676 0.93337 1.21451 1.00083 0.98804 0.93005 1.19058 0.94489 0.94707 0.93589 1.21751 1.32257 1.11748 0.92144 0.91618 1.26103 0.95386 0.95861 1.03153 1.70130 1.39213 1.24043 1.24424 0.85378 0.79168 0.78119 0.77950 1.19705 1.20938 1.18324 1.19800 0.96475 0.98720 0.94275 1.21144 0.95998 0.97824 0.99732 1.21429 1.00541 0.99284 0.92607 1.21526 0.95426 0.98877 0.98668 1.21447 0.96860 0.96918 0.98774 1.21219 1.00196 1.00180 0.92240 0.89953 0.92759 0.92291 0.92459 0.92378 0.90650 0.74958 0.86580 0.86704 0.93832 0.93780 0.92154 0.92196 0.99732 0.99703 0.92863 0.85058 0.84034 0.84028 0.84030 0.84940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.30 7.86 71.98 0.57 -2.74 16 2 C 0.22 4.19 0.89 2.86 0.00 4.19 16 3 C -0.16 -3.35 8.37 71.98 0.60 -2.75 16 4 N -0.72 -14.07 4.88 -426.30 -2.08 -16.15 16 5 C 0.51 13.80 7.25 87.66 0.64 14.44 16 6 O -0.57 -20.26 12.19 -3.05 -0.04 -20.30 16 7 C -0.13 -3.25 5.70 29.85 0.17 -3.08 16 8 C -0.09 -3.40 4.50 30.59 0.14 -3.26 16 9 C -0.10 -3.96 5.15 30.60 0.16 -3.80 16 10 C 0.02 1.04 4.97 29.85 0.15 1.19 16 11 C -0.54 -31.65 9.11 25.60 0.23 -31.41 16 12 H 0.07 3.60 7.74 -2.91 -0.02 3.58 16 13 C -0.01 -0.47 5.46 84.65 0.46 -0.01 16 14 N -0.94 -59.43 13.29 21.44 0.28 -59.14 16 15 Si 0.97 45.11 29.54 68.60 2.03 47.14 16 16 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 17 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 18 H -0.26 -11.34 7.11 99.48 0.71 -10.64 16 19 C -0.09 -1.47 4.80 -19.86 -0.10 -1.56 16 20 C -0.13 -1.76 9.02 22.27 0.20 -1.56 16 21 C -0.12 -1.38 10.05 22.27 0.22 -1.16 16 22 C -0.13 -1.36 10.05 22.27 0.22 -1.13 16 23 C -0.12 -1.40 10.05 22.27 0.22 -1.18 16 24 C -0.12 -1.68 9.15 22.27 0.20 -1.48 16 25 H 0.08 1.35 6.52 -2.38 -0.02 1.34 16 26 H 0.05 1.48 6.25 -2.38 -0.01 1.46 16 27 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.06 1.62 6.09 -2.39 -0.01 1.61 16 30 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.41 5.71 6.40 -92.71 -0.59 5.12 16 32 H 0.12 2.32 8.14 -2.39 -0.02 2.30 16 33 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 34 H 0.04 1.73 8.10 -2.39 -0.02 1.71 16 35 H 0.04 1.75 8.10 -2.39 -0.02 1.73 16 36 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 37 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 38 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 39 H -0.02 -0.94 8.14 -2.38 -0.02 -0.96 16 40 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 41 H 0.13 1.44 6.42 -2.91 -0.02 1.42 16 42 H 0.14 1.03 8.06 -2.91 -0.02 1.00 16 43 H 0.14 0.87 8.06 -2.91 -0.02 0.85 16 44 H 0.14 1.01 8.06 -2.91 -0.02 0.99 16 45 H 0.13 1.58 6.33 -2.91 -0.02 1.56 16 Total: -1.00 -74.63 361.30 4.66 -69.97 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: 0.37 Total: 13.78 kcal Atomic # 6 Polarization: -39.39 SS G_CDS: 4.10 Total: -35.29 kcal Atomic # 7 Polarization: -73.50 SS G_CDS: -1.79 Total: -75.30 kcal Atomic # 8 Polarization: -20.26 SS G_CDS: -0.04 Total: -20.30 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -74.63 4.66 -69.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588899486.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.560 kcal (2) G-P(sol) polarization free energy of solvation -74.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds