Wall clock time and date at job start Tue Mar 31 2020 06:48:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53006 * 109.47283 * 2 1 4 4 C 1.52994 * 109.47142 * 300.00096 * 3 2 1 5 5 C 1.53002 * 109.46942 * 300.00091 * 4 3 2 6 6 C 1.52999 * 109.46933 * 60.00009 * 3 2 1 7 7 C 1.52997 * 109.47451 * 59.99886 * 6 3 2 8 8 C 1.50696 * 109.47231 * 179.97438 * 3 2 1 9 9 O 1.21288 * 120.00070 * 0.02562 * 8 3 2 10 10 N 1.34772 * 120.00032 * 179.97438 * 8 3 2 11 11 C 1.39935 * 120.00110 * 174.89136 * 10 8 3 12 12 C 1.39292 * 119.94571 * 145.79447 * 11 10 8 13 13 C 1.38491 * 120.43127 * 180.02562 * 12 11 10 14 14 C 1.37689 * 120.31977 * 359.97232 * 13 12 11 15 15 C 1.40739 * 119.88495 * 0.02671 * 14 13 12 16 16 C 1.41406 * 120.21081 * 179.97438 * 15 14 13 17 17 H 1.08008 * 120.00054 * 205.18077 * 16 15 14 18 18 C 1.39928 * 120.00279 * 25.18189 * 16 15 14 19 19 N 1.30837 * 119.99653 * 16.78704 * 18 16 15 20 20 Si 1.86796 * 120.00405 * 196.79361 * 18 16 15 21 21 H 1.48497 * 109.47245 * 59.99581 * 20 18 16 22 22 H 1.48503 * 109.47296 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.46929 * 299.99699 * 20 18 16 24 24 C 1.38245 * 119.95100 * 325.52529 * 11 10 8 25 25 H 1.09000 * 109.47329 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.47396 * 300.00315 * 1 2 3 27 27 H 1.09007 * 109.47314 * 59.99895 * 1 2 3 28 28 H 1.09002 * 109.47606 * 240.00147 * 2 1 3 29 29 H 1.09003 * 109.47518 * 119.99631 * 2 1 3 30 30 H 1.09005 * 109.47473 * 59.99506 * 4 3 2 31 31 H 1.09000 * 109.47328 * 179.97438 * 4 3 2 32 32 H 1.08999 * 109.46853 * 299.99679 * 5 4 3 33 33 H 1.09000 * 109.47392 * 59.99693 * 5 4 3 34 34 H 1.09000 * 109.47285 * 180.02562 * 5 4 3 35 35 H 1.09000 * 109.47048 * 180.02562 * 6 3 2 36 36 H 1.09013 * 109.47056 * 299.99999 * 6 3 2 37 37 H 1.09000 * 109.47331 * 300.00239 * 7 6 3 38 38 H 1.08999 * 109.46767 * 60.00162 * 7 6 3 39 39 H 1.09001 * 109.47443 * 179.97438 * 7 6 3 40 40 H 0.97002 * 119.99952 * 354.90050 * 10 8 3 41 41 H 1.07995 * 119.78766 * 359.97438 * 12 11 10 42 42 H 1.07999 * 119.84419 * 180.02562 * 13 12 11 43 43 H 1.07996 * 120.06066 * 179.97438 * 14 13 12 44 44 H 0.97000 * 119.99997 * 180.02562 * 19 18 16 45 45 H 1.08004 * 120.15628 * 359.97438 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5300 2.1638 -1.2492 5 6 2.0400 1.4425 -2.4984 6 6 1.5300 2.1638 1.2492 7 6 2.0399 1.4425 2.4985 8 6 3.5470 1.4425 0.0006 9 8 4.1534 0.3921 0.0006 10 7 4.2208 2.6097 0.0002 11 6 5.6160 2.6122 0.1087 12 6 6.3635 3.5799 -0.5582 13 6 7.7448 3.5915 -0.4582 14 6 8.3945 2.6457 0.3027 15 6 7.6524 1.6617 0.9822 16 6 8.3127 0.6867 1.7652 17 1 7.8432 -0.2689 1.9465 18 6 9.5743 0.9600 2.3053 19 7 10.0025 2.1943 2.3752 20 14 10.6472 -0.4374 2.9262 21 1 10.9299 -1.3772 1.8117 22 1 11.9251 0.1128 3.4454 23 1 9.9397 -1.1586 4.0145 24 6 6.2498 1.6575 0.8821 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 0.4400 2.1638 -1.2493 31 1 1.8930 3.1916 -1.2490 32 1 3.1300 1.4425 -2.4984 33 1 1.6767 0.4148 -2.4984 34 1 1.6771 1.9565 -3.3884 35 1 1.8930 3.1915 1.2490 36 1 0.4399 2.1638 1.2492 37 1 1.6766 0.4149 2.4985 38 1 3.1299 1.4426 2.4985 39 1 1.6769 1.9566 3.3885 40 1 3.7387 3.4480 -0.0751 41 1 5.8629 4.3257 -1.1578 42 1 8.3150 4.3465 -0.9790 43 1 9.4718 2.6583 0.3774 44 1 10.8772 2.3838 2.7492 45 1 5.6707 0.9096 1.4034 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590884531.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:06 Heat of formation + Delta-G solvation = -42.892696 kcal Electronic energy + Delta-G solvation = -23800.386070 eV Core-core repulsion = 20588.514716 eV Total energy + Delta-G solvation = -3211.871354 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.51333 -37.80342 -36.37181 -34.41749 -32.99966 -32.30742 -30.88582 -29.78287 -28.31204 -26.67822 -25.25645 -24.21792 -22.27812 -22.03885 -20.87678 -20.11844 -18.33666 -17.64887 -16.41584 -15.83943 -15.54175 -15.35216 -14.98801 -14.69975 -14.41429 -13.53830 -13.39160 -13.09571 -12.97300 -12.83452 -12.74535 -12.69874 -12.19614 -12.13278 -11.65716 -11.61986 -11.54222 -11.33106 -11.18056 -11.12073 -11.07420 -10.85264 -10.72197 -10.46209 -10.32259 -10.28633 -10.05548 -9.60203 -9.28526 -9.00927 -8.81527 -7.41277 -6.86411 -6.67532 -4.30447 2.67831 2.89117 3.10438 3.14434 3.24399 3.45437 3.70242 3.99065 4.54088 4.67791 4.70927 4.81001 5.12866 5.13607 5.30710 5.31602 5.36836 5.44524 5.54993 5.67761 5.74181 5.74937 5.81493 5.87922 5.93869 6.00983 6.09515 6.13460 6.23967 6.25575 6.28491 6.33753 6.43312 6.55109 6.84792 7.06691 7.10005 7.12559 7.29244 7.62074 7.77977 8.01947 8.13096 8.24277 8.32803 8.67719 8.82506 8.98210 9.03060 10.24978 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.021123 B = 0.004331 C = 0.003949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.243379 B = 6463.683189 C = 7089.385611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.104 4.104 3 C -0.076 4.076 4 C -0.112 4.112 5 C -0.158 4.158 6 C -0.111 4.111 7 C -0.159 4.159 8 C 0.520 3.480 9 O -0.518 6.518 10 N -0.668 5.668 11 C 0.154 3.846 12 C -0.263 4.263 13 C -0.093 4.093 14 C -0.173 4.173 15 C 0.120 3.880 16 C -0.459 4.459 17 H 0.077 0.923 18 C 0.076 3.924 19 N -0.796 5.796 20 Si 0.908 3.092 21 H -0.264 1.264 22 H -0.279 1.279 23 H -0.266 1.266 24 C -0.209 4.209 25 H 0.053 0.947 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.064 0.936 32 H 0.058 0.942 33 H 0.060 0.940 34 H 0.054 0.946 35 H 0.064 0.936 36 H 0.074 0.926 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.055 0.945 40 H 0.395 0.605 41 H 0.087 0.913 42 H 0.090 0.910 43 H 0.118 0.882 44 H 0.280 0.720 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.662 1.318 -3.471 16.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.141 4.141 3 C -0.079 4.079 4 C -0.150 4.150 5 C -0.216 4.216 6 C -0.149 4.149 7 C -0.217 4.217 8 C 0.307 3.693 9 O -0.392 6.392 10 N -0.312 5.312 11 C 0.062 3.938 12 C -0.284 4.284 13 C -0.112 4.112 14 C -0.192 4.192 15 C 0.117 3.883 16 C -0.489 4.489 17 H 0.095 0.905 18 C -0.141 4.141 19 N -0.422 5.422 20 Si 0.732 3.268 21 H -0.188 1.188 22 H -0.204 1.204 23 H -0.190 1.190 24 C -0.231 4.231 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.090 0.910 29 H 0.091 0.909 30 H 0.093 0.907 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.083 0.917 36 H 0.092 0.908 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.074 0.926 40 H 0.229 0.771 41 H 0.106 0.894 42 H 0.108 0.892 43 H 0.136 0.864 44 H 0.091 0.909 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -15.055 0.678 -3.357 15.440 hybrid contribution 0.365 0.023 0.283 0.462 sum -14.690 0.701 -3.074 15.025 Atomic orbital electron populations 1.21907 0.95847 1.01553 1.01823 1.21424 0.95024 0.94022 1.03673 1.20950 0.92068 0.98270 0.96649 1.21616 1.01206 0.98877 0.93304 1.21871 1.01970 1.00800 0.96919 1.21607 1.01040 0.98980 0.93271 1.21876 1.02232 1.00671 0.96879 1.20369 0.89145 0.83880 0.75956 1.90735 1.69775 1.31123 1.47612 1.43486 1.06458 1.08441 1.72790 1.17444 0.80191 0.98372 0.97810 1.20038 0.94024 1.04377 1.09978 1.20456 0.93198 0.98347 0.99161 1.21331 0.99895 0.98057 0.99954 1.17482 0.90121 0.91394 0.89290 1.19541 1.00696 1.01140 1.27503 0.90479 1.25887 0.97889 0.96171 0.94128 1.69825 1.18825 1.19552 1.33980 0.86375 0.78877 0.81735 0.79774 1.18823 1.20380 1.19030 1.20952 0.94442 1.02471 1.05231 0.92786 0.92456 0.92530 0.91012 0.90896 0.90700 0.91769 0.92322 0.92066 0.92654 0.91699 0.90781 0.92126 0.92091 0.92604 0.77098 0.89446 0.89156 0.86388 0.90941 0.87752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.21 37.15 0.34 -1.07 16 2 C -0.10 -1.28 3.57 -26.73 -0.10 -1.38 16 3 C -0.08 -0.96 0.21 -155.66 -0.03 -0.99 16 4 C -0.11 -1.17 4.54 -26.73 -0.12 -1.29 16 5 C -0.16 -1.83 9.31 37.16 0.35 -1.48 16 6 C -0.11 -1.22 4.55 -26.73 -0.12 -1.34 16 7 C -0.16 -2.01 9.31 37.16 0.35 -1.67 16 8 C 0.52 9.20 3.68 -10.99 -0.04 9.16 16 9 O -0.52 -11.55 13.74 5.55 0.08 -11.47 16 10 N -0.67 -12.06 5.12 -9.91 -0.05 -12.11 16 11 C 0.15 3.52 6.25 -83.76 -0.52 3.00 16 12 C -0.26 -5.89 9.97 -39.10 -0.39 -6.28 16 13 C -0.09 -2.20 10.02 -39.69 -0.40 -2.60 16 14 C -0.17 -4.60 8.69 -38.84 -0.34 -4.94 16 15 C 0.12 3.35 5.57 -106.85 -0.59 2.76 16 16 C -0.46 -12.78 9.05 -37.74 -0.34 -13.12 16 17 H 0.08 2.12 7.90 -52.48 -0.41 1.70 16 18 C 0.08 1.98 5.16 -17.34 -0.09 1.89 16 19 N -0.80 -20.98 10.94 55.55 0.61 -20.38 16 20 Si 0.91 19.35 29.59 -169.99 -5.03 14.32 16 21 H -0.26 -5.60 7.11 56.52 0.40 -5.20 16 22 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 23 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 24 C -0.21 -5.50 8.39 -38.68 -0.32 -5.82 16 25 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.06 0.48 6.43 -51.93 -0.33 0.15 16 27 H 0.06 0.46 6.43 -51.93 -0.33 0.13 16 28 H 0.07 0.97 6.39 -51.93 -0.33 0.64 16 29 H 0.07 1.01 6.39 -51.93 -0.33 0.68 16 30 H 0.07 0.63 6.43 -51.93 -0.33 0.30 16 31 H 0.06 0.63 7.46 -51.93 -0.39 0.24 16 32 H 0.06 0.85 7.22 -51.93 -0.37 0.48 16 33 H 0.06 0.69 6.43 -51.93 -0.33 0.35 16 34 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.68 7.69 -51.93 -0.40 0.28 16 36 H 0.07 0.65 6.43 -51.92 -0.33 0.32 16 37 H 0.06 0.73 6.43 -51.93 -0.33 0.40 16 38 H 0.06 0.98 7.22 -51.93 -0.37 0.60 16 39 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.40 5.76 7.68 -40.82 -0.31 5.45 16 41 H 0.09 1.70 8.06 -52.49 -0.42 1.27 16 42 H 0.09 1.90 8.06 -52.49 -0.42 1.47 16 43 H 0.12 3.23 6.17 -52.49 -0.32 2.90 16 44 H 0.28 6.71 8.30 -40.82 -0.34 6.38 16 45 H 0.10 2.82 6.49 -52.48 -0.34 2.48 16 LS Contribution 346.17 15.07 5.22 5.22 Total: -1.00 -30.36 346.17 -8.40 -38.76 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: -6.84 Total: 10.85 kcal Atomic # 6 Polarization: -22.80 SS G_CDS: -2.38 Total: -25.18 kcal Atomic # 7 Polarization: -33.05 SS G_CDS: 0.56 Total: -32.49 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: 0.08 Total: -11.47 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -5.03 Total: 14.32 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.36 -8.40 -38.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590884531.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.133 kcal (2) G-P(sol) polarization free energy of solvation -30.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds