Wall clock time and date at job start Tue Mar 31 2020 06:48:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53006 * 109.47283 * 2 1 4 4 C 1.52994 * 109.47142 * 300.00096 * 3 2 1 5 5 C 1.53002 * 109.46942 * 300.00091 * 4 3 2 6 6 C 1.52999 * 109.46933 * 60.00009 * 3 2 1 7 7 C 1.52997 * 109.47451 * 59.99886 * 6 3 2 8 8 C 1.50696 * 109.47231 * 179.97438 * 3 2 1 9 9 O 1.21288 * 120.00070 * 0.02562 * 8 3 2 10 10 N 1.34772 * 120.00032 * 179.97438 * 8 3 2 11 11 C 1.39935 * 120.00110 * 174.89136 * 10 8 3 12 12 C 1.39292 * 119.94571 * 145.79447 * 11 10 8 13 13 C 1.38491 * 120.43127 * 180.02562 * 12 11 10 14 14 C 1.37689 * 120.31977 * 359.97232 * 13 12 11 15 15 C 1.40739 * 119.88495 * 0.02671 * 14 13 12 16 16 C 1.41406 * 120.21081 * 179.97438 * 15 14 13 17 17 H 1.08008 * 120.00054 * 205.18077 * 16 15 14 18 18 C 1.39928 * 120.00279 * 25.18189 * 16 15 14 19 19 N 1.30837 * 119.99653 * 16.78704 * 18 16 15 20 20 Si 1.86796 * 120.00405 * 196.79361 * 18 16 15 21 21 H 1.48497 * 109.47245 * 59.99581 * 20 18 16 22 22 H 1.48503 * 109.47296 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.46929 * 299.99699 * 20 18 16 24 24 C 1.38245 * 119.95100 * 325.52529 * 11 10 8 25 25 H 1.09000 * 109.47329 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.47396 * 300.00315 * 1 2 3 27 27 H 1.09007 * 109.47314 * 59.99895 * 1 2 3 28 28 H 1.09002 * 109.47606 * 240.00147 * 2 1 3 29 29 H 1.09003 * 109.47518 * 119.99631 * 2 1 3 30 30 H 1.09005 * 109.47473 * 59.99506 * 4 3 2 31 31 H 1.09000 * 109.47328 * 179.97438 * 4 3 2 32 32 H 1.08999 * 109.46853 * 299.99679 * 5 4 3 33 33 H 1.09000 * 109.47392 * 59.99693 * 5 4 3 34 34 H 1.09000 * 109.47285 * 180.02562 * 5 4 3 35 35 H 1.09000 * 109.47048 * 180.02562 * 6 3 2 36 36 H 1.09013 * 109.47056 * 299.99999 * 6 3 2 37 37 H 1.09000 * 109.47331 * 300.00239 * 7 6 3 38 38 H 1.08999 * 109.46767 * 60.00162 * 7 6 3 39 39 H 1.09001 * 109.47443 * 179.97438 * 7 6 3 40 40 H 0.97002 * 119.99952 * 354.90050 * 10 8 3 41 41 H 1.07995 * 119.78766 * 359.97438 * 12 11 10 42 42 H 1.07999 * 119.84419 * 180.02562 * 13 12 11 43 43 H 1.07996 * 120.06066 * 179.97438 * 14 13 12 44 44 H 0.97000 * 119.99997 * 180.02562 * 19 18 16 45 45 H 1.08004 * 120.15628 * 359.97438 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5300 2.1638 -1.2492 5 6 2.0400 1.4425 -2.4984 6 6 1.5300 2.1638 1.2492 7 6 2.0399 1.4425 2.4985 8 6 3.5470 1.4425 0.0006 9 8 4.1534 0.3921 0.0006 10 7 4.2208 2.6097 0.0002 11 6 5.6160 2.6122 0.1087 12 6 6.3635 3.5799 -0.5582 13 6 7.7448 3.5915 -0.4582 14 6 8.3945 2.6457 0.3027 15 6 7.6524 1.6617 0.9822 16 6 8.3127 0.6867 1.7652 17 1 7.8432 -0.2689 1.9465 18 6 9.5743 0.9600 2.3053 19 7 10.0025 2.1943 2.3752 20 14 10.6472 -0.4374 2.9262 21 1 10.9299 -1.3772 1.8117 22 1 11.9251 0.1128 3.4454 23 1 9.9397 -1.1586 4.0145 24 6 6.2498 1.6575 0.8821 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 0.4400 2.1638 -1.2493 31 1 1.8930 3.1916 -1.2490 32 1 3.1300 1.4425 -2.4984 33 1 1.6767 0.4148 -2.4984 34 1 1.6771 1.9565 -3.3884 35 1 1.8930 3.1915 1.2490 36 1 0.4399 2.1638 1.2492 37 1 1.6766 0.4149 2.4985 38 1 3.1299 1.4426 2.4985 39 1 1.6769 1.9566 3.3885 40 1 3.7387 3.4480 -0.0751 41 1 5.8629 4.3257 -1.1578 42 1 8.3150 4.3465 -0.9790 43 1 9.4718 2.6583 0.3774 44 1 10.8772 2.3838 2.7492 45 1 5.6707 0.9096 1.4034 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590884531.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:05 Heat of formation + Delta-G solvation = -60.128138 kcal Electronic energy + Delta-G solvation = -23801.133455 eV Core-core repulsion = 20588.514716 eV Total energy + Delta-G solvation = -3212.618739 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.87244 -39.46623 -37.82309 -36.21279 -34.83024 -33.22888 -31.84730 -31.75063 -30.01147 -27.83718 -27.25630 -25.16460 -23.81981 -22.94114 -22.78370 -21.77059 -19.78107 -19.35907 -17.77489 -17.29021 -17.06535 -16.82969 -16.47983 -16.09340 -15.99538 -15.13605 -14.80763 -14.57712 -14.35571 -14.04280 -13.93148 -13.67820 -13.63579 -13.53662 -13.07471 -13.01823 -12.93736 -12.78859 -12.55085 -12.53648 -12.23686 -12.21698 -12.14640 -11.88179 -11.63720 -11.52804 -11.25928 -11.21576 -11.12746 -10.83381 -10.43173 -9.41481 -8.75782 -8.61430 -6.39290 0.87810 0.99374 1.33675 1.45006 1.48756 1.87841 2.18663 2.28193 2.72052 3.59448 3.60118 3.72618 3.83774 4.09764 4.24910 4.39021 4.44801 4.45375 4.47494 4.54473 4.61243 4.65696 4.80576 4.89264 4.92366 5.01638 5.03472 5.04692 5.06756 5.10376 5.10943 5.21791 5.25828 5.28129 5.31746 5.32680 5.34653 5.38689 5.64210 5.76315 5.86260 6.06000 6.09659 6.33824 6.65988 6.69529 6.91837 6.99611 7.39097 8.31336 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.021123 B = 0.004331 C = 0.003949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.243379 B = 6463.683189 C = 7089.385611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.104 4.104 3 C -0.066 4.066 4 C -0.109 4.109 5 C -0.159 4.159 6 C -0.108 4.108 7 C -0.160 4.160 8 C 0.517 3.483 9 O -0.572 6.572 10 N -0.659 5.659 11 C 0.160 3.840 12 C -0.253 4.253 13 C -0.091 4.091 14 C -0.199 4.199 15 C 0.090 3.910 16 C -0.505 4.505 17 H 0.060 0.940 18 C 0.040 3.960 19 N -0.821 5.821 20 Si 0.980 3.020 21 H -0.263 1.263 22 H -0.258 1.258 23 H -0.263 1.263 24 C -0.236 4.236 25 H 0.058 0.942 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.052 0.948 29 H 0.046 0.954 30 H 0.111 0.889 31 H 0.078 0.922 32 H 0.019 0.981 33 H 0.058 0.942 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.113 0.887 37 H 0.060 0.940 38 H 0.014 0.986 39 H 0.074 0.926 40 H 0.416 0.584 41 H 0.130 0.870 42 H 0.123 0.877 43 H 0.104 0.896 44 H 0.290 0.710 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.160 3.131 -4.264 18.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.142 4.142 3 C -0.069 4.069 4 C -0.146 4.146 5 C -0.216 4.216 6 C -0.145 4.145 7 C -0.217 4.217 8 C 0.306 3.694 9 O -0.450 6.450 10 N -0.304 5.304 11 C 0.067 3.933 12 C -0.274 4.274 13 C -0.109 4.109 14 C -0.219 4.219 15 C 0.087 3.913 16 C -0.534 4.534 17 H 0.078 0.922 18 C -0.175 4.175 19 N -0.447 5.447 20 Si 0.801 3.199 21 H -0.188 1.188 22 H -0.182 1.182 23 H -0.188 1.188 24 C -0.258 4.258 25 H 0.077 0.923 26 H 0.090 0.910 27 H 0.094 0.906 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.129 0.871 31 H 0.097 0.903 32 H 0.038 0.962 33 H 0.077 0.923 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.131 0.869 37 H 0.079 0.921 38 H 0.033 0.967 39 H 0.093 0.907 40 H 0.254 0.746 41 H 0.148 0.852 42 H 0.141 0.859 43 H 0.122 0.878 44 H 0.101 0.899 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -17.597 2.538 -4.160 18.259 hybrid contribution 1.047 -0.505 0.471 1.254 sum -16.549 2.033 -3.690 17.077 Atomic orbital electron populations 1.21871 0.92485 1.02541 1.03382 1.21414 0.97770 0.93489 1.01557 1.21009 0.87506 0.99238 0.99189 1.21697 1.03283 0.98815 0.90800 1.21875 0.99438 1.01449 0.98811 1.21684 1.03214 0.98738 0.90854 1.21878 0.99198 1.01524 0.99103 1.21483 0.91479 0.82654 0.73750 1.90715 1.71460 1.33106 1.49713 1.43426 1.04610 1.09910 1.72478 1.17547 0.82702 0.96998 0.96044 1.20473 0.93657 1.04348 1.08949 1.20838 0.94236 0.97863 0.98011 1.21289 0.99342 0.99443 1.01809 1.17828 0.91086 0.92310 0.90100 1.19696 1.02792 1.01030 1.29895 0.92175 1.26677 0.98280 0.98889 0.93701 1.69853 1.19548 1.21158 1.34144 0.85294 0.77394 0.78161 0.79075 1.18758 1.18181 1.18754 1.20890 0.94142 1.03619 1.07152 0.92333 0.90965 0.90646 0.92969 0.93480 0.87075 0.90320 0.96166 0.92254 0.90355 0.90575 0.86928 0.92126 0.96692 0.90705 0.74629 0.85174 0.85907 0.87782 0.89948 0.90237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 9.21 71.98 0.66 -1.53 16 2 C -0.10 -2.52 3.57 30.59 0.11 -2.41 16 3 C -0.07 -1.56 0.21 -52.93 -0.01 -1.58 16 4 C -0.11 -1.86 4.54 30.59 0.14 -1.72 16 5 C -0.16 -3.35 9.31 71.98 0.67 -2.68 16 6 C -0.11 -2.05 4.55 30.59 0.14 -1.91 16 7 C -0.16 -3.97 9.31 71.98 0.67 -3.30 16 8 C 0.52 18.67 3.68 87.66 0.32 18.99 16 9 O -0.57 -27.33 13.74 -3.05 -0.04 -27.37 16 10 N -0.66 -23.56 5.12 -303.66 -1.55 -25.11 16 11 C 0.16 7.47 6.25 38.10 0.24 7.71 16 12 C -0.25 -10.97 9.97 22.58 0.23 -10.75 16 13 C -0.09 -4.26 10.02 22.20 0.22 -4.04 16 14 C -0.20 -11.01 8.69 22.75 0.20 -10.81 16 15 C 0.09 5.31 5.57 -21.31 -0.12 5.19 16 16 C -0.50 -30.13 9.05 23.46 0.21 -29.92 16 17 H 0.06 3.62 7.90 -2.91 -0.02 3.60 16 18 C 0.04 2.13 5.16 85.25 0.44 2.57 16 19 N -0.82 -44.68 10.94 21.82 0.24 -44.44 16 20 Si 0.98 40.97 29.59 68.60 2.03 43.00 16 21 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 22 H -0.26 -9.83 7.11 99.48 0.71 -9.13 16 23 H -0.26 -10.78 7.11 99.48 0.71 -10.08 16 24 C -0.24 -13.22 8.39 22.85 0.19 -13.03 16 25 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.07 0.89 6.43 -2.38 -0.02 0.87 16 27 H 0.07 0.87 6.43 -2.38 -0.02 0.86 16 28 H 0.05 1.45 6.39 -2.39 -0.02 1.43 16 29 H 0.05 1.36 6.39 -2.39 -0.02 1.34 16 30 H 0.11 1.21 6.43 -2.38 -0.02 1.19 16 31 H 0.08 1.16 7.46 -2.39 -0.02 1.15 16 32 H 0.02 0.56 7.22 -2.39 -0.02 0.55 16 33 H 0.06 1.26 6.43 -2.39 -0.02 1.24 16 34 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.08 1.31 7.69 -2.39 -0.02 1.30 16 36 H 0.11 1.38 6.43 -2.38 -0.02 1.36 16 37 H 0.06 1.47 6.43 -2.39 -0.02 1.46 16 38 H 0.01 0.48 7.22 -2.39 -0.02 0.46 16 39 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.42 11.15 7.68 -92.71 -0.71 10.44 16 41 H 0.13 4.52 8.06 -2.91 -0.02 4.50 16 42 H 0.12 4.89 8.06 -2.91 -0.02 4.87 16 43 H 0.10 5.94 6.17 -2.91 -0.02 5.92 16 44 H 0.29 14.13 8.30 -92.71 -0.77 13.36 16 45 H 0.08 4.74 6.49 -2.91 -0.02 4.72 16 Total: -1.00 -73.54 346.17 5.27 -68.27 By element: Atomic # 1 Polarization: 34.57 SS G_CDS: 0.28 Total: 34.85 kcal Atomic # 6 Polarization: -53.52 SS G_CDS: 4.31 Total: -49.21 kcal Atomic # 7 Polarization: -68.23 SS G_CDS: -1.31 Total: -69.55 kcal Atomic # 8 Polarization: -27.33 SS G_CDS: -0.04 Total: -27.37 kcal Atomic # 14 Polarization: 40.97 SS G_CDS: 2.03 Total: 43.00 kcal Total: -73.54 5.27 -68.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590884531.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.146 kcal (2) G-P(sol) polarization free energy of solvation -73.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds