Wall clock time and date at job start Tue Mar 31 2020 06:25:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52992 * 109.47531 * 2 1 4 4 C 1.50699 * 109.47330 * 179.97438 * 3 2 1 5 5 C 1.38229 * 120.00230 * 270.27821 * 4 3 2 6 6 C 1.38238 * 120.00124 * 180.28369 * 5 4 3 7 7 C 1.38234 * 119.99675 * 359.45911 * 6 5 4 8 8 C 1.50703 * 120.00257 * 180.27927 * 7 6 5 9 9 N 1.46900 * 109.46725 * 89.99983 * 8 7 6 10 10 C 1.47846 * 111.00374 * 290.84573 * 9 8 7 11 11 C 1.54909 * 104.79528 * 213.63848 * 10 9 8 12 12 C 1.55142 * 101.65478 * 37.06870 * 11 10 9 13 13 O 1.42892 * 110.70341 * 82.72993 * 12 11 10 14 14 C 1.50699 * 110.85206 * 205.89219 * 12 11 10 15 15 H 1.08003 * 119.99450 * 113.69315 * 14 12 11 16 16 C 1.37867 * 120.00258 * 293.68610 * 14 12 11 17 17 N 1.31514 * 120.00167 * 0.02562 * 16 14 12 18 18 Si 1.86801 * 120.00197 * 180.02562 * 16 14 12 19 19 H 1.48506 * 109.46894 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47554 * 119.99614 * 18 16 14 21 21 H 1.48497 * 109.47236 * 240.00403 * 18 16 14 22 22 C 1.47443 * 110.99882 * 170.00243 * 9 8 7 23 23 C 1.38234 * 120.00240 * 0.26327 * 7 6 5 24 24 C 1.38234 * 119.99755 * 90.00186 * 4 3 2 25 25 H 1.09000 * 109.46752 * 299.99951 * 1 2 3 26 26 H 1.08993 * 109.47126 * 59.99667 * 1 2 3 27 27 H 1.09000 * 109.47241 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46752 * 240.00048 * 2 1 3 29 29 H 1.09007 * 109.47154 * 120.00570 * 2 1 3 30 30 H 1.09007 * 109.46769 * 59.99980 * 3 2 1 31 31 H 1.08998 * 109.47623 * 300.00462 * 3 2 1 32 32 H 1.08004 * 120.00244 * 0.02562 * 5 4 3 33 33 H 1.08002 * 120.00519 * 179.74530 * 6 5 4 34 34 H 1.08988 * 109.47584 * 210.00457 * 8 7 6 35 35 H 1.09000 * 109.47013 * 330.00974 * 8 7 6 36 36 H 1.08998 * 110.37119 * 332.46588 * 10 9 8 37 37 H 1.08997 * 110.37140 * 94.81215 * 10 9 8 38 38 H 1.09005 * 110.98730 * 278.97811 * 11 10 9 39 39 H 1.08995 * 111.02285 * 155.18147 * 11 10 9 40 40 H 0.96705 * 113.99976 * 66.39670 * 13 12 11 41 41 H 0.97006 * 119.99922 * 180.02562 * 17 16 14 42 42 H 1.09001 * 109.89518 * 242.66726 * 22 9 8 43 43 H 1.09005 * 109.89084 * 3.69106 * 22 9 8 44 44 H 1.07997 * 120.00460 * 180.02562 * 23 7 6 45 45 H 1.08001 * 120.00274 * 0.02562 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5471 1.4423 0.0006 5 6 4.2378 1.4367 1.1980 6 6 5.6201 1.4426 1.1986 7 6 6.3117 1.4428 0.0017 8 6 7.8188 1.4428 0.0022 9 7 8.3084 0.0578 0.0021 10 6 8.0215 -0.6057 1.2918 11 6 9.2138 -1.5693 1.5147 12 6 10.3976 -0.7383 0.9536 13 8 10.8770 0.1840 1.9342 14 6 11.5102 -1.6393 0.4833 15 1 11.7586 -1.6876 -0.5666 16 6 12.2110 -2.4018 1.3933 17 7 11.9083 -2.3433 2.6718 18 14 13.5907 -3.5182 0.8105 19 1 13.7311 -3.4034 -0.6635 20 1 14.8627 -3.1149 1.4622 21 1 13.2748 -4.9242 1.1690 22 6 9.7627 0.0115 -0.2364 23 6 5.6211 1.4427 -1.1957 24 6 4.2387 1.4422 -1.1962 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.6767 1.9562 0.8901 31 1 1.6768 1.9563 -0.8899 32 1 3.6974 1.4319 2.1331 33 1 6.1598 1.4423 2.1341 34 1 8.1824 1.9568 -0.8874 35 1 8.1818 1.9564 0.8925 36 1 7.9730 0.1300 2.0945 37 1 7.0879 -1.1649 1.2314 38 1 9.0814 -2.4916 0.9490 39 1 9.3528 -1.7806 2.5749 40 1 11.2853 -0.2366 2.7032 41 1 12.4017 -2.8796 3.3121 42 1 9.9696 -0.5222 -1.1640 43 1 10.1613 1.0244 -0.2948 44 1 6.1614 1.4424 -2.1308 45 1 3.6991 1.4425 -2.1318 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592150295.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:06 Heat of formation + Delta-G solvation = -42.066327 kcal Electronic energy + Delta-G solvation = -22879.585243 eV Core-core repulsion = 19667.749722 eV Total energy + Delta-G solvation = -3211.835520 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.58045 -38.17752 -35.59687 -34.43661 -32.06868 -31.79735 -30.78470 -29.48432 -28.08606 -26.94540 -24.74721 -23.61898 -22.57809 -21.78224 -20.52776 -19.95964 -19.42700 -17.13097 -16.13532 -15.75561 -15.34064 -14.98549 -14.88604 -14.57145 -14.14359 -13.99502 -13.77218 -13.35553 -13.30369 -13.20107 -12.66491 -12.26590 -12.06529 -12.02396 -11.85023 -11.52012 -11.33760 -11.27160 -11.14771 -11.04258 -10.87130 -10.74832 -10.61837 -10.47666 -10.40605 -10.26140 -9.87467 -9.26074 -8.74780 -8.62681 -8.39123 -8.07331 -7.60974 -6.21017 -4.27811 1.47865 1.57698 3.21974 3.30578 3.35121 3.85587 4.31157 4.67739 4.74342 4.81975 4.93844 5.00903 5.06033 5.14685 5.16984 5.29555 5.31271 5.56960 5.59837 5.63214 5.67426 5.73565 5.79694 5.81933 5.96334 5.98917 6.11438 6.12677 6.17009 6.23996 6.26111 6.32112 6.44445 6.53425 6.61749 6.71748 6.86594 6.96522 7.09161 7.17350 7.43596 7.49270 7.68995 7.78610 7.84305 8.15169 8.73857 9.40122 9.52753 10.86295 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.030241 B = 0.003070 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.670216 B = 9119.496002 C = 9356.689976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C -0.077 4.077 4 C -0.093 4.093 5 C -0.119 4.119 6 C -0.109 4.109 7 C -0.066 4.066 8 C 0.087 3.913 9 N -0.524 5.524 10 C 0.045 3.955 11 C -0.131 4.131 12 C 0.236 3.764 13 O -0.593 6.593 14 C -0.529 4.529 15 H 0.063 0.937 16 C 0.068 3.932 17 N -0.900 5.900 18 Si 0.901 3.099 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.283 1.283 22 C 0.057 3.943 23 C -0.099 4.099 24 C -0.121 4.121 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.116 0.884 33 H 0.118 0.882 34 H 0.074 0.926 35 H 0.043 0.957 36 H 0.036 0.964 37 H 0.059 0.941 38 H 0.062 0.938 39 H 0.072 0.928 40 H 0.384 0.616 41 H 0.266 0.734 42 H 0.080 0.920 43 H 0.046 0.954 44 H 0.121 0.879 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.517 6.579 -3.675 19.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.114 4.114 4 C -0.093 4.093 5 C -0.137 4.137 6 C -0.127 4.127 7 C -0.067 4.067 8 C -0.041 4.041 9 N -0.248 5.248 10 C -0.082 4.082 11 C -0.170 4.170 12 C 0.196 3.804 13 O -0.403 6.403 14 C -0.568 4.568 15 H 0.081 0.919 16 C -0.133 4.133 17 N -0.540 5.540 18 Si 0.728 3.272 19 H -0.196 1.196 20 H -0.209 1.209 21 H -0.209 1.209 22 C -0.070 4.070 23 C -0.118 4.118 24 C -0.139 4.139 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.134 0.866 33 H 0.136 0.864 34 H 0.093 0.907 35 H 0.061 0.939 36 H 0.054 0.946 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.090 0.910 40 H 0.235 0.765 41 H 0.076 0.924 42 H 0.098 0.902 43 H 0.065 0.935 44 H 0.139 0.861 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -17.942 6.688 -4.344 19.635 hybrid contribution 1.416 -0.726 0.872 1.814 sum -16.527 5.963 -3.472 17.909 Atomic orbital electron populations 1.21791 0.95901 1.01623 1.01653 1.21520 0.95372 0.96272 1.02600 1.20588 0.91231 0.97190 1.02437 1.19796 0.95269 1.00906 0.93303 1.20930 0.94050 1.01485 0.97273 1.21092 0.94029 0.99791 0.97823 1.19872 0.95591 0.98227 0.93005 1.21222 0.90345 0.91393 1.01180 1.63721 1.15251 1.13317 1.32498 1.23057 0.99143 0.96888 0.89141 1.23170 0.94373 0.97695 1.01793 1.19716 0.90561 0.85504 0.84644 1.86067 1.80615 1.38290 1.35339 1.21649 1.16995 1.23744 0.94402 0.91892 1.25015 0.97113 0.96299 0.94885 1.69603 1.41359 1.41768 1.01289 0.86398 0.81576 0.80126 0.79060 1.19637 1.20890 1.20891 1.22859 0.84959 0.99708 0.99488 1.20995 0.93772 0.99241 0.97748 1.20949 0.94142 1.01596 0.97210 0.92807 0.92825 0.92736 0.91804 0.91797 0.91357 0.91347 0.86577 0.86366 0.90707 0.93901 0.94585 0.92258 0.91885 0.90964 0.76484 0.92368 0.90215 0.93510 0.86138 0.86572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.91 37.16 0.37 -0.72 16 2 C -0.12 -1.05 5.92 -26.74 -0.16 -1.21 16 3 C -0.08 -0.70 5.34 -27.89 -0.15 -0.85 16 4 C -0.09 -1.08 5.13 -104.63 -0.54 -1.62 16 5 C -0.12 -1.50 9.70 -39.58 -0.38 -1.88 16 6 C -0.11 -1.56 8.93 -39.58 -0.35 -1.91 16 7 C -0.07 -1.01 5.09 -104.62 -0.53 -1.54 16 8 C 0.09 1.47 4.72 -4.97 -0.02 1.44 16 9 N -0.52 -10.33 5.15 -232.69 -1.20 -11.53 16 10 C 0.05 0.92 5.60 -2.30 -0.01 0.90 16 11 C -0.13 -3.09 5.67 -24.59 -0.14 -3.23 16 12 C 0.24 5.91 0.85 -89.95 -0.08 5.83 16 13 O -0.59 -15.55 13.08 -35.23 -0.46 -16.02 16 14 C -0.53 -14.26 8.22 -34.44 -0.28 -14.54 16 15 H 0.06 1.69 7.53 -52.48 -0.40 1.29 16 16 C 0.07 1.82 5.28 -17.82 -0.09 1.72 16 17 N -0.90 -24.13 10.69 55.43 0.59 -23.53 16 18 Si 0.90 20.76 29.54 -169.99 -5.02 15.74 16 19 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 22 C 0.06 1.26 6.21 -2.84 -0.02 1.24 16 23 C -0.10 -1.36 9.70 -39.58 -0.38 -1.74 16 24 C -0.12 -1.47 9.70 -39.58 -0.38 -1.85 16 25 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.57 8.09 -51.93 -0.42 0.15 16 31 H 0.07 0.56 8.09 -51.93 -0.42 0.14 16 32 H 0.12 1.23 8.06 -52.48 -0.42 0.81 16 33 H 0.12 1.67 7.49 -52.49 -0.39 1.28 16 34 H 0.07 1.17 7.97 -51.94 -0.41 0.76 16 35 H 0.04 0.76 7.79 -51.93 -0.40 0.36 16 36 H 0.04 0.73 6.99 -51.93 -0.36 0.36 16 37 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 38 H 0.06 1.53 8.05 -51.93 -0.42 1.11 16 39 H 0.07 1.79 7.76 -51.93 -0.40 1.38 16 40 H 0.38 10.28 6.98 45.56 0.32 10.60 16 41 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 42 H 0.08 1.75 7.63 -51.93 -0.40 1.35 16 43 H 0.05 1.01 7.48 -51.93 -0.39 0.63 16 44 H 0.12 1.53 8.06 -52.49 -0.42 1.11 16 45 H 0.12 1.17 8.06 -52.49 -0.42 0.74 16 LS Contribution 358.96 15.07 5.41 5.41 Total: -1.00 -27.60 358.96 -10.88 -38.47 By element: Atomic # 1 Polarization: 18.46 SS G_CDS: -7.04 Total: 11.42 kcal Atomic # 6 Polarization: -16.80 SS G_CDS: -3.16 Total: -19.96 kcal Atomic # 7 Polarization: -34.46 SS G_CDS: -0.61 Total: -35.07 kcal Atomic # 8 Polarization: -15.55 SS G_CDS: -0.46 Total: -16.02 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -27.60 -10.88 -38.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592150295.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.593 kcal (2) G-P(sol) polarization free energy of solvation -27.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds