Wall clock time and date at job start Tue Mar 31 2020 06:25:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52992 * 109.47531 * 2 1 4 4 C 1.50699 * 109.47330 * 179.97438 * 3 2 1 5 5 C 1.38229 * 120.00230 * 270.27821 * 4 3 2 6 6 C 1.38238 * 120.00124 * 180.28369 * 5 4 3 7 7 C 1.38234 * 119.99675 * 359.45911 * 6 5 4 8 8 C 1.50703 * 120.00257 * 180.27927 * 7 6 5 9 9 N 1.46900 * 109.46725 * 89.99983 * 8 7 6 10 10 C 1.47846 * 111.00374 * 290.84573 * 9 8 7 11 11 C 1.54909 * 104.79528 * 213.63848 * 10 9 8 12 12 C 1.55142 * 101.65478 * 37.06870 * 11 10 9 13 13 O 1.42892 * 110.70341 * 82.72993 * 12 11 10 14 14 C 1.50699 * 110.85206 * 205.89219 * 12 11 10 15 15 H 1.08003 * 119.99450 * 113.69315 * 14 12 11 16 16 C 1.37867 * 120.00258 * 293.68610 * 14 12 11 17 17 N 1.31514 * 120.00167 * 0.02562 * 16 14 12 18 18 Si 1.86801 * 120.00197 * 180.02562 * 16 14 12 19 19 H 1.48506 * 109.46894 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47554 * 119.99614 * 18 16 14 21 21 H 1.48497 * 109.47236 * 240.00403 * 18 16 14 22 22 C 1.47443 * 110.99882 * 170.00243 * 9 8 7 23 23 C 1.38234 * 120.00240 * 0.26327 * 7 6 5 24 24 C 1.38234 * 119.99755 * 90.00186 * 4 3 2 25 25 H 1.09000 * 109.46752 * 299.99951 * 1 2 3 26 26 H 1.08993 * 109.47126 * 59.99667 * 1 2 3 27 27 H 1.09000 * 109.47241 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46752 * 240.00048 * 2 1 3 29 29 H 1.09007 * 109.47154 * 120.00570 * 2 1 3 30 30 H 1.09007 * 109.46769 * 59.99980 * 3 2 1 31 31 H 1.08998 * 109.47623 * 300.00462 * 3 2 1 32 32 H 1.08004 * 120.00244 * 0.02562 * 5 4 3 33 33 H 1.08002 * 120.00519 * 179.74530 * 6 5 4 34 34 H 1.08988 * 109.47584 * 210.00457 * 8 7 6 35 35 H 1.09000 * 109.47013 * 330.00974 * 8 7 6 36 36 H 1.08998 * 110.37119 * 332.46588 * 10 9 8 37 37 H 1.08997 * 110.37140 * 94.81215 * 10 9 8 38 38 H 1.09005 * 110.98730 * 278.97811 * 11 10 9 39 39 H 1.08995 * 111.02285 * 155.18147 * 11 10 9 40 40 H 0.96705 * 113.99976 * 66.39670 * 13 12 11 41 41 H 0.97006 * 119.99922 * 180.02562 * 17 16 14 42 42 H 1.09001 * 109.89518 * 242.66726 * 22 9 8 43 43 H 1.09005 * 109.89084 * 3.69106 * 22 9 8 44 44 H 1.07997 * 120.00460 * 180.02562 * 23 7 6 45 45 H 1.08001 * 120.00274 * 0.02562 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5471 1.4423 0.0006 5 6 4.2378 1.4367 1.1980 6 6 5.6201 1.4426 1.1986 7 6 6.3117 1.4428 0.0017 8 6 7.8188 1.4428 0.0022 9 7 8.3084 0.0578 0.0021 10 6 8.0215 -0.6057 1.2918 11 6 9.2138 -1.5693 1.5147 12 6 10.3976 -0.7383 0.9536 13 8 10.8770 0.1840 1.9342 14 6 11.5102 -1.6393 0.4833 15 1 11.7586 -1.6876 -0.5666 16 6 12.2110 -2.4018 1.3933 17 7 11.9083 -2.3433 2.6718 18 14 13.5907 -3.5182 0.8105 19 1 13.7311 -3.4034 -0.6635 20 1 14.8627 -3.1149 1.4622 21 1 13.2748 -4.9242 1.1690 22 6 9.7627 0.0115 -0.2364 23 6 5.6211 1.4427 -1.1957 24 6 4.2387 1.4422 -1.1962 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.6767 1.9562 0.8901 31 1 1.6768 1.9563 -0.8899 32 1 3.6974 1.4319 2.1331 33 1 6.1598 1.4423 2.1341 34 1 8.1824 1.9568 -0.8874 35 1 8.1818 1.9564 0.8925 36 1 7.9730 0.1300 2.0945 37 1 7.0879 -1.1649 1.2314 38 1 9.0814 -2.4916 0.9490 39 1 9.3528 -1.7806 2.5749 40 1 11.2853 -0.2366 2.7032 41 1 12.4017 -2.8796 3.3121 42 1 9.9696 -0.5222 -1.1640 43 1 10.1613 1.0244 -0.2948 44 1 6.1614 1.4424 -2.1308 45 1 3.6991 1.4425 -2.1318 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592150295.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:05 Heat of formation + Delta-G solvation = -57.584360 kcal Electronic energy + Delta-G solvation = -22880.258155 eV Core-core repulsion = 19667.749722 eV Total energy + Delta-G solvation = -3212.508433 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.76576 -39.74417 -36.91476 -35.74553 -34.13513 -33.01804 -31.78889 -30.90232 -29.90172 -28.14361 -26.38513 -24.99238 -23.60333 -22.64388 -21.82924 -21.32504 -21.23714 -19.15813 -17.33413 -16.94740 -16.84061 -16.56326 -16.27346 -15.87479 -15.59032 -15.42660 -14.93060 -14.57699 -14.27255 -14.24987 -14.10268 -13.83979 -13.51499 -13.28117 -13.15647 -13.03424 -12.82235 -12.69276 -12.50816 -12.34209 -12.25627 -12.15340 -11.97534 -11.95196 -11.78478 -11.50965 -11.43885 -11.16555 -10.64622 -10.11537 -9.75343 -9.46809 -9.19112 -8.23319 -6.38018 0.44743 0.56912 1.39003 1.42149 1.53132 2.37893 2.78100 3.01057 3.32006 3.80683 3.87486 3.91297 3.99533 4.13472 4.18875 4.25533 4.30519 4.35054 4.40400 4.50125 4.58339 4.58673 4.64244 4.71321 4.77227 4.81425 4.89909 4.92053 5.04858 5.09859 5.14309 5.20786 5.25641 5.31674 5.33470 5.46563 5.49097 5.51655 5.57064 5.77483 5.78087 5.79534 5.95677 6.15262 6.18894 6.22205 6.66593 7.32688 7.42167 8.82465 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.030241 B = 0.003070 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.670216 B = 9119.496002 C = 9356.689976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.119 4.119 3 C -0.074 4.074 4 C -0.089 4.089 5 C -0.124 4.124 6 C -0.122 4.122 7 C -0.087 4.087 8 C 0.090 3.910 9 N -0.521 5.521 10 C 0.060 3.940 11 C -0.125 4.125 12 C 0.221 3.779 13 O -0.599 6.599 14 C -0.555 4.555 15 H 0.057 0.943 16 C 0.027 3.973 17 N -0.916 5.916 18 Si 0.963 3.037 19 H -0.270 1.270 20 H -0.279 1.279 21 H -0.278 1.278 22 C 0.064 3.936 23 C -0.107 4.107 24 C -0.122 4.122 25 H 0.059 0.941 26 H 0.061 0.939 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.053 0.947 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.134 0.866 33 H 0.112 0.888 34 H 0.085 0.915 35 H 0.030 0.970 36 H 0.035 0.965 37 H 0.072 0.928 38 H 0.050 0.950 39 H 0.053 0.947 40 H 0.377 0.623 41 H 0.269 0.731 42 H 0.079 0.921 43 H 0.046 0.954 44 H 0.128 0.872 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.267 6.736 -4.539 20.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.157 4.157 3 C -0.111 4.111 4 C -0.089 4.089 5 C -0.142 4.142 6 C -0.141 4.141 7 C -0.087 4.087 8 C -0.037 4.037 9 N -0.245 5.245 10 C -0.067 4.067 11 C -0.164 4.164 12 C 0.181 3.819 13 O -0.409 6.409 14 C -0.594 4.594 15 H 0.075 0.925 16 C -0.173 4.173 17 N -0.556 5.556 18 Si 0.788 3.212 19 H -0.194 1.194 20 H -0.205 1.205 21 H -0.204 1.204 22 C -0.064 4.064 23 C -0.125 4.125 24 C -0.140 4.140 25 H 0.078 0.922 26 H 0.080 0.920 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.097 0.903 31 H 0.101 0.899 32 H 0.152 0.848 33 H 0.130 0.870 34 H 0.104 0.896 35 H 0.049 0.951 36 H 0.054 0.946 37 H 0.090 0.910 38 H 0.069 0.931 39 H 0.072 0.928 40 H 0.228 0.772 41 H 0.079 0.921 42 H 0.097 0.903 43 H 0.065 0.935 44 H 0.145 0.855 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -19.708 6.856 -5.212 21.508 hybrid contribution 1.898 -0.749 1.151 2.343 sum -17.810 6.107 -4.061 19.261 Atomic orbital electron populations 1.21767 0.94573 1.02013 1.02349 1.21495 0.96525 0.95833 1.01816 1.20633 0.89173 0.97611 1.03697 1.20154 0.96850 0.99080 0.92793 1.21172 0.93422 1.00989 0.98613 1.21148 0.95000 1.00564 0.97345 1.19744 0.94298 1.00622 0.94070 1.21222 0.91959 0.89463 1.01085 1.63735 1.13506 1.15362 1.31909 1.22893 0.98125 0.96185 0.89506 1.22987 0.95497 0.97705 1.00194 1.19960 0.90753 0.85918 0.85305 1.86061 1.80696 1.38770 1.35362 1.21904 1.18254 1.24845 0.94357 0.92476 1.25726 0.99114 0.97443 0.95045 1.69684 1.41955 1.42056 1.01940 0.85439 0.78819 0.78354 0.78572 1.19440 1.20480 1.20413 1.22730 0.86293 0.99194 0.98181 1.21151 0.94696 0.99229 0.97454 1.21247 0.93616 1.00650 0.98505 0.92222 0.92027 0.92563 0.92462 0.92774 0.90306 0.89933 0.84805 0.87008 0.89622 0.95139 0.94627 0.90998 0.93127 0.92790 0.77189 0.92111 0.90329 0.93539 0.85451 0.84204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.91 71.98 0.71 -1.04 16 2 C -0.12 -1.80 5.92 30.59 0.18 -1.62 16 3 C -0.07 -1.11 5.34 29.85 0.16 -0.96 16 4 C -0.09 -1.86 5.13 -19.87 -0.10 -1.96 16 5 C -0.12 -2.90 9.70 22.27 0.22 -2.68 16 6 C -0.12 -3.40 8.93 22.27 0.20 -3.20 16 7 C -0.09 -2.57 5.09 -19.87 -0.10 -2.67 16 8 C 0.09 3.03 4.72 85.56 0.40 3.44 16 9 N -0.52 -20.47 5.15 -890.10 -4.59 -25.05 16 10 C 0.06 2.45 5.60 86.77 0.49 2.94 16 11 C -0.12 -5.99 5.67 31.98 0.18 -5.81 16 12 C 0.22 11.24 0.85 -10.36 -0.01 11.23 16 13 O -0.60 -32.14 13.08 -148.98 -1.95 -34.09 16 14 C -0.56 -30.32 8.22 25.60 0.21 -30.11 16 15 H 0.06 3.10 7.53 -2.91 -0.02 3.08 16 16 C 0.03 1.42 5.28 84.65 0.45 1.87 16 17 N -0.92 -49.64 10.69 21.44 0.23 -49.41 16 18 Si 0.96 42.64 29.54 68.60 2.03 44.66 16 19 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 20 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 21 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 22 C 0.06 2.83 6.21 86.65 0.54 3.36 16 23 C -0.11 -2.77 9.70 22.27 0.22 -2.55 16 24 C -0.12 -2.68 9.70 22.27 0.22 -2.46 16 25 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 26 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 30 H 0.08 1.05 8.09 -2.38 -0.02 1.03 16 31 H 0.08 1.05 8.09 -2.39 -0.02 1.03 16 32 H 0.13 2.57 8.06 -2.91 -0.02 2.55 16 33 H 0.11 3.17 7.49 -2.91 -0.02 3.15 16 34 H 0.09 2.64 7.97 -2.39 -0.02 2.63 16 35 H 0.03 1.09 7.79 -2.39 -0.02 1.07 16 36 H 0.04 1.45 6.99 -2.39 -0.02 1.43 16 37 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 38 H 0.05 2.50 8.05 -2.38 -0.02 2.48 16 39 H 0.05 2.74 7.76 -2.39 -0.02 2.72 16 40 H 0.38 20.81 6.98 -74.05 -0.52 20.30 16 41 H 0.27 13.84 8.31 -92.70 -0.77 13.07 16 42 H 0.08 3.47 7.63 -2.39 -0.02 3.46 16 43 H 0.05 2.03 7.48 -2.38 -0.02 2.01 16 44 H 0.13 3.04 8.06 -2.91 -0.02 3.01 16 45 H 0.14 2.35 8.06 -2.91 -0.02 2.33 16 Total: -1.00 -58.35 358.96 0.11 -58.24 By element: Atomic # 1 Polarization: 37.43 SS G_CDS: 0.44 Total: 37.86 kcal Atomic # 6 Polarization: -36.17 SS G_CDS: 3.96 Total: -32.21 kcal Atomic # 7 Polarization: -70.11 SS G_CDS: -4.36 Total: -74.47 kcal Atomic # 8 Polarization: -32.14 SS G_CDS: -1.95 Total: -34.09 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.66 kcal Total: -58.35 0.11 -58.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592150295.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.653 kcal (2) G-P(sol) polarization free energy of solvation -58.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds