Wall clock time and date at job start Tue Mar 31 2020 06:07:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50701 * 109.47346 * 2 1 4 4 C 1.38257 * 119.99782 * 264.97923 * 3 2 1 5 5 C 1.38210 * 119.99734 * 179.97438 * 4 3 2 6 6 C 1.38256 * 120.00337 * 359.97438 * 5 4 3 7 7 C 1.38209 * 119.99963 * 359.80584 * 6 5 4 8 8 C 1.38208 * 120.00078 * 84.99627 * 3 2 1 9 9 C 1.50700 * 120.00163 * 359.97438 * 8 3 2 10 10 C 1.53001 * 109.47281 * 84.99546 * 9 8 3 11 11 N 1.46902 * 109.46881 * 179.97438 * 10 9 8 12 12 C 1.48527 * 111.00363 * 287.39933 * 11 10 9 13 13 C 1.55190 * 103.23671 * 200.25890 * 12 11 10 14 14 C 1.54595 * 102.80276 * 37.43192 * 13 12 11 15 15 O 1.42907 * 110.31010 * 219.05029 * 14 13 12 16 16 C 1.50700 * 110.30911 * 96.98273 * 14 13 12 17 17 H 1.07999 * 119.99988 * 242.78830 * 16 14 13 18 18 C 1.37885 * 120.00047 * 62.79010 * 16 14 13 19 19 N 1.31518 * 119.99792 * 359.72305 * 18 16 14 20 20 Si 1.86795 * 120.00009 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47163 * 59.99902 * 20 18 16 22 22 H 1.48495 * 109.47159 * 179.97438 * 20 18 16 23 23 H 1.48505 * 109.47290 * 299.99897 * 20 18 16 24 24 C 1.47897 * 110.99547 * 169.99906 * 11 10 9 25 25 H 1.09008 * 109.47069 * 300.00154 * 1 2 3 26 26 H 1.09002 * 109.47511 * 60.00132 * 1 2 3 27 27 H 1.08999 * 109.47253 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47332 * 239.99617 * 2 1 3 29 29 H 1.09002 * 109.46988 * 119.99922 * 2 1 3 30 30 H 1.08003 * 119.99859 * 359.97438 * 4 3 2 31 31 H 1.08002 * 119.99883 * 179.97438 * 5 4 3 32 32 H 1.08000 * 119.99756 * 179.97438 * 6 5 4 33 33 H 1.08000 * 120.00191 * 180.23283 * 7 6 5 34 34 H 1.09000 * 109.46786 * 324.99358 * 9 8 3 35 35 H 1.09000 * 109.47160 * 204.99845 * 9 8 3 36 36 H 1.08995 * 109.46752 * 60.00530 * 10 9 8 37 37 H 1.08997 * 109.47012 * 299.99760 * 10 9 8 38 38 H 1.09000 * 110.66561 * 318.71101 * 12 11 10 39 39 H 1.08999 * 110.66737 * 81.67534 * 12 11 10 40 40 H 1.09002 * 110.76219 * 279.12003 * 13 12 11 41 41 H 1.09001 * 110.80503 * 155.76044 * 13 12 11 42 42 H 0.96708 * 113.99929 * 297.20961 * 15 14 13 43 43 H 0.97000 * 119.99468 * 179.97438 * 19 18 16 44 44 H 1.09000 * 109.92283 * 26.49708 * 24 11 10 45 45 H 1.09005 * 109.92050 * 265.19672 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3616 2.0376 -1.1928 5 6 2.8219 3.3408 -1.1928 6 6 2.9525 4.0279 -0.0002 7 6 2.6191 3.4128 1.1918 8 6 2.1643 2.1071 1.1923 9 6 1.8053 1.4349 2.4925 10 6 3.0020 0.6251 2.9955 11 7 2.6521 -0.0296 4.2631 12 6 2.5818 0.9577 5.3705 13 6 2.7367 0.0790 6.6403 14 6 3.7666 -0.9853 6.1968 15 8 3.4177 -2.2650 6.7286 16 6 5.1506 -0.5929 6.6459 17 1 5.9207 -0.3978 5.9143 18 6 5.4338 -0.4831 7.9909 19 7 4.4946 -0.7155 8.8817 20 14 7.1491 0.0040 8.5475 21 1 7.4859 1.3424 7.9995 22 1 7.1932 0.0516 10.0310 23 1 8.1317 -0.9944 8.0544 24 6 3.6896 -1.0065 4.6590 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 2.2591 1.5010 -2.1244 31 1 3.0794 3.8225 -2.1245 32 1 3.3126 5.0461 -0.0003 33 1 2.7176 3.9508 2.1231 34 1 0.9565 0.7694 2.3350 35 1 1.5417 2.1912 3.2318 36 1 3.8506 1.2907 3.1529 37 1 3.2655 -0.1312 2.2561 38 1 3.3981 1.6762 5.2977 39 1 1.6193 1.4693 5.3692 40 1 1.7883 -0.3887 6.9047 41 1 3.1235 0.6666 7.4729 42 1 3.4281 -2.3056 7.6948 43 1 4.6939 -0.6385 9.8279 44 1 4.6517 -0.7188 4.2351 45 1 3.4121 -2.0029 4.3149 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592153164.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:12 Heat of formation + Delta-G solvation = -38.596719 kcal Electronic energy + Delta-G solvation = -23276.484243 eV Core-core repulsion = 20064.799177 eV Total energy + Delta-G solvation = -3211.685067 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.80421 -38.26612 -35.27674 -34.24754 -32.78261 -32.12177 -30.08008 -29.36842 -27.98973 -27.10469 -24.63643 -23.93868 -22.75571 -21.58701 -20.45446 -19.96748 -19.31378 -17.02218 -16.42725 -15.97960 -15.51991 -15.06362 -14.91345 -14.33890 -13.90935 -13.80117 -13.70636 -13.48737 -13.16378 -13.09569 -12.66120 -12.41867 -12.25711 -12.01999 -11.83356 -11.68843 -11.32883 -11.19769 -11.06376 -11.03289 -10.78146 -10.67670 -10.55957 -10.45884 -10.30574 -10.20118 -9.94211 -9.13783 -8.81141 -8.59409 -8.54308 -8.09641 -7.69953 -6.20696 -4.30568 1.34179 1.37694 3.22618 3.27754 3.30694 3.72540 4.28840 4.56706 4.72131 4.83830 4.95508 5.05644 5.08557 5.10980 5.30239 5.34221 5.42390 5.51734 5.55487 5.59045 5.79767 5.84308 5.86412 5.94043 5.94905 6.01871 6.07095 6.10455 6.16197 6.27079 6.29782 6.42974 6.46428 6.48271 6.52451 6.73760 6.75639 7.00011 7.03165 7.10300 7.40080 7.52348 7.59290 7.75176 7.82896 8.22562 8.72485 9.38442 9.56933 10.84827 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.022273 B = 0.003706 C = 0.003405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.821384 B = 7552.623066 C = 8221.723752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.092 4.092 3 C -0.077 4.077 4 C -0.119 4.119 5 C -0.127 4.127 6 C -0.125 4.125 7 C -0.115 4.115 8 C -0.071 4.071 9 C -0.079 4.079 10 C 0.055 3.945 11 N -0.518 5.518 12 C 0.039 3.961 13 C -0.127 4.127 14 C 0.246 3.754 15 O -0.590 6.590 16 C -0.535 4.535 17 H 0.058 0.942 18 C 0.070 3.930 19 N -0.894 5.894 20 Si 0.898 3.102 21 H -0.277 1.277 22 H -0.285 1.285 23 H -0.275 1.275 24 C 0.053 3.947 25 H 0.059 0.941 26 H 0.051 0.949 27 H 0.058 0.942 28 H 0.067 0.933 29 H 0.082 0.918 30 H 0.118 0.882 31 H 0.117 0.883 32 H 0.118 0.882 33 H 0.121 0.879 34 H 0.083 0.917 35 H 0.070 0.930 36 H 0.033 0.967 37 H 0.068 0.932 38 H 0.039 0.961 39 H 0.062 0.938 40 H 0.048 0.952 41 H 0.082 0.918 42 H 0.381 0.619 43 H 0.268 0.732 44 H 0.042 0.958 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.904 6.652 -15.893 18.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.129 4.129 3 C -0.077 4.077 4 C -0.137 4.137 5 C -0.145 4.145 6 C -0.143 4.143 7 C -0.133 4.133 8 C -0.072 4.072 9 C -0.116 4.116 10 C -0.074 4.074 11 N -0.242 5.242 12 C -0.089 4.089 13 C -0.166 4.166 14 C 0.206 3.794 15 O -0.399 6.399 16 C -0.574 4.574 17 H 0.076 0.924 18 C -0.132 4.132 19 N -0.534 5.534 20 Si 0.726 3.274 21 H -0.202 1.202 22 H -0.211 1.211 23 H -0.201 1.201 24 C -0.074 4.074 25 H 0.078 0.922 26 H 0.070 0.930 27 H 0.077 0.923 28 H 0.086 0.914 29 H 0.101 0.899 30 H 0.136 0.864 31 H 0.135 0.865 32 H 0.136 0.864 33 H 0.139 0.861 34 H 0.101 0.899 35 H 0.088 0.912 36 H 0.051 0.949 37 H 0.086 0.914 38 H 0.057 0.943 39 H 0.080 0.920 40 H 0.067 0.933 41 H 0.100 0.900 42 H 0.231 0.769 43 H 0.078 0.922 44 H 0.061 0.939 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -6.491 6.234 -16.412 18.718 hybrid contribution 1.913 1.050 0.992 2.397 sum -4.578 7.285 -15.420 17.658 Atomic orbital electron populations 1.21733 0.94742 1.01783 1.01974 1.20635 0.96290 0.92674 1.03278 1.19801 0.99004 0.96283 0.92578 1.20999 1.00197 0.95169 0.97369 1.21063 1.00653 0.94929 0.97890 1.21091 1.00722 0.99844 0.92671 1.21100 0.99309 0.94729 0.98130 1.19842 0.98484 0.93991 0.94848 1.20627 0.99163 0.99097 0.92746 1.22175 0.95412 0.96803 0.93028 1.64745 1.44265 1.13656 1.01549 1.23202 0.99044 0.94449 0.92167 1.23058 0.98867 0.98692 0.95985 1.19348 0.91766 0.80935 0.87347 1.86113 1.92192 1.34494 1.27063 1.21733 0.96453 1.47020 0.92154 0.92428 1.25004 0.97412 0.94209 0.96582 1.69658 1.32610 1.49461 1.01712 0.86559 0.84304 0.79117 0.77469 1.20223 1.21064 1.20067 1.22766 0.91911 0.95420 0.97313 0.92233 0.92986 0.92322 0.91396 0.89932 0.86416 0.86493 0.86404 0.86143 0.89871 0.91165 0.94858 0.91390 0.94296 0.92002 0.93317 0.89971 0.76879 0.92216 0.93948 0.91321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.72 37.16 0.36 -1.06 16 2 C -0.09 -0.99 5.38 -27.88 -0.15 -1.14 16 3 C -0.08 -0.91 5.13 -104.63 -0.54 -1.45 16 4 C -0.12 -1.29 9.68 -39.58 -0.38 -1.67 16 5 C -0.13 -1.32 10.05 -39.59 -0.40 -1.72 16 6 C -0.13 -1.36 10.05 -39.59 -0.40 -1.76 16 7 C -0.11 -1.39 9.68 -39.58 -0.38 -1.78 16 8 C -0.07 -0.91 5.13 -104.62 -0.54 -1.45 16 9 C -0.08 -1.08 4.75 -27.88 -0.13 -1.21 16 10 C 0.05 0.89 4.52 -3.82 -0.02 0.87 16 11 N -0.52 -10.06 5.24 -230.29 -1.21 -11.27 16 12 C 0.04 0.78 5.92 -1.76 -0.01 0.77 16 13 C -0.13 -3.00 5.90 -24.73 -0.15 -3.14 16 14 C 0.25 6.22 0.99 -90.42 -0.09 6.13 16 15 O -0.59 -15.78 12.93 -35.23 -0.46 -16.24 16 16 C -0.54 -14.44 8.23 -34.44 -0.28 -14.72 16 17 H 0.06 1.56 7.34 -52.49 -0.39 1.17 16 18 C 0.07 1.85 5.01 -17.82 -0.09 1.76 16 19 N -0.89 -23.88 10.38 55.43 0.58 -23.30 16 20 Si 0.90 20.68 29.54 -169.99 -5.02 15.66 16 21 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 22 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 23 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 24 C 0.05 1.19 6.13 -2.76 -0.02 1.17 16 25 H 0.06 0.62 6.80 -51.92 -0.35 0.27 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.07 0.65 8.05 -51.93 -0.42 0.23 16 29 H 0.08 0.99 5.62 -51.93 -0.29 0.70 16 30 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 31 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 32 H 0.12 1.04 8.06 -52.49 -0.42 0.61 16 33 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 34 H 0.08 1.13 5.62 -51.93 -0.29 0.84 16 35 H 0.07 0.97 7.27 -51.93 -0.38 0.59 16 36 H 0.03 0.57 7.83 -51.93 -0.41 0.16 16 37 H 0.07 1.07 6.74 -51.93 -0.35 0.72 16 38 H 0.04 0.79 7.81 -51.93 -0.41 0.39 16 39 H 0.06 1.10 7.79 -51.93 -0.40 0.70 16 40 H 0.05 1.15 8.08 -51.93 -0.42 0.73 16 41 H 0.08 2.09 6.63 -51.93 -0.34 1.74 16 42 H 0.38 10.26 7.20 45.56 0.33 10.59 16 43 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 44 H 0.04 0.94 7.02 -51.93 -0.36 0.58 16 45 H 0.07 1.54 7.96 -51.93 -0.41 1.13 16 LS Contribution 350.27 15.07 5.28 5.28 Total: -1.00 -27.75 350.27 -10.61 -38.36 By element: Atomic # 1 Polarization: 18.47 SS G_CDS: -6.57 Total: 11.90 kcal Atomic # 6 Polarization: -17.18 SS G_CDS: -3.21 Total: -20.39 kcal Atomic # 7 Polarization: -33.94 SS G_CDS: -0.63 Total: -34.57 kcal Atomic # 8 Polarization: -15.78 SS G_CDS: -0.46 Total: -16.24 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -27.75 -10.61 -38.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592153164.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.241 kcal (2) G-P(sol) polarization free energy of solvation -27.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds