Wall clock time and date at job start Tue Mar 31 2020 06:25:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46886 * 2 1 4 4 C 1.50703 * 109.46912 * 180.02562 * 3 2 1 5 5 C 1.38258 * 119.99670 * 269.72692 * 4 3 2 6 6 C 1.38219 * 119.99522 * 179.80753 * 5 4 3 7 7 C 1.38250 * 120.00130 * 0.40023 * 6 5 4 8 8 C 1.38212 * 120.00000 * 359.85691 * 7 6 5 9 9 C 1.50702 * 119.99912 * 179.97438 * 8 7 6 10 10 N 1.46894 * 109.47425 * 269.97588 * 9 8 7 11 11 C 1.47850 * 110.99971 * 290.84383 * 10 9 8 12 12 C 1.54907 * 104.79378 * 213.63377 * 11 10 9 13 13 C 1.55136 * 101.65528 * 37.07112 * 12 11 10 14 14 O 1.42909 * 110.70413 * 82.72631 * 13 12 11 15 15 C 1.50700 * 110.85475 * 205.88988 * 13 12 11 16 16 H 1.08005 * 119.99372 * 113.68999 * 15 13 12 17 17 C 1.37870 * 120.00075 * 293.68661 * 15 13 12 18 18 N 1.31515 * 120.00151 * 359.97438 * 17 15 13 19 19 Si 1.86804 * 119.99785 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.46938 * 60.00347 * 19 17 15 21 21 H 1.48501 * 109.46802 * 179.97438 * 19 17 15 22 22 H 1.48489 * 109.47139 * 299.99853 * 19 17 15 23 23 C 1.47446 * 111.00268 * 170.00087 * 10 9 8 24 24 C 1.38210 * 120.00088 * 89.99887 * 4 3 2 25 25 H 1.09001 * 109.47109 * 299.99380 * 1 2 3 26 26 H 1.09002 * 109.47508 * 59.99571 * 1 2 3 27 27 H 1.09000 * 109.47437 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46652 * 240.00345 * 2 1 3 29 29 H 1.08992 * 109.47514 * 120.00434 * 2 1 3 30 30 H 1.09002 * 109.47398 * 300.00496 * 3 2 1 31 31 H 1.09001 * 109.47194 * 60.00677 * 3 2 1 32 32 H 1.07994 * 120.00494 * 0.02562 * 5 4 3 33 33 H 1.08005 * 119.99927 * 180.23109 * 6 5 4 34 34 H 1.08002 * 119.99686 * 179.82680 * 7 6 5 35 35 H 1.09003 * 109.47176 * 29.98009 * 9 8 7 36 36 H 1.09012 * 109.46916 * 149.97672 * 9 8 7 37 37 H 1.08998 * 110.37575 * 332.46353 * 11 10 9 38 38 H 1.08998 * 110.37203 * 94.80913 * 11 10 9 39 39 H 1.09002 * 110.99105 * 278.97373 * 12 11 10 40 40 H 1.09006 * 111.01918 * 155.18093 * 12 11 10 41 41 H 0.96702 * 114.00039 * 66.40297 * 14 13 12 42 42 H 0.97007 * 119.99931 * 180.02562 * 18 17 15 43 43 H 1.09001 * 109.88492 * 242.66399 * 23 10 9 44 44 H 1.08996 * 109.88428 * 3.85721 * 23 10 9 45 45 H 1.08002 * 120.00083 * 359.97438 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 6 4.2387 1.4481 1.1964 6 6 5.6209 1.4440 1.1959 7 6 6.3116 1.4429 -0.0017 8 6 5.6201 1.4427 -1.1984 9 6 6.3731 1.4420 -2.5038 10 7 6.6178 2.8267 -2.9288 11 6 5.3573 3.4897 -3.3256 12 6 5.7602 4.4526 -4.4702 13 6 6.8381 3.6213 -5.2143 14 8 6.2286 2.6982 -6.1192 15 6 7.8015 4.5220 -5.9434 16 1 8.8350 4.5707 -5.6336 17 6 7.3636 5.2837 -7.0059 18 7 6.1052 5.2240 -7.3834 19 14 8.5581 6.3996 -7.9101 20 1 9.6597 5.5850 -8.4827 21 1 7.8444 7.1052 -9.0047 22 1 9.1196 7.3952 -6.9623 23 6 7.5514 2.8724 -4.0690 24 6 4.2375 1.4427 -1.1978 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.6765 1.9564 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 3.6992 1.4520 2.1319 33 1 6.1613 1.4446 2.1310 34 1 7.3917 1.4426 -0.0021 35 1 7.3256 0.9282 -2.3736 36 1 5.7836 0.9277 -3.2630 37 1 4.6379 2.7536 -3.6844 38 1 4.9427 4.0494 -2.4872 39 1 6.1836 5.3753 -4.0733 40 1 4.9113 4.6633 -5.1208 41 1 5.7667 3.1182 -6.8577 42 1 5.7972 5.7597 -8.1312 43 1 8.4580 3.4066 -3.7847 44 1 7.7991 1.8594 -4.3862 45 1 3.6972 1.4424 -2.1330 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592522578.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:11 Heat of formation + Delta-G solvation = -41.962497 kcal Electronic energy + Delta-G solvation = -23080.269408 eV Core-core repulsion = 19868.438390 eV Total energy + Delta-G solvation = -3211.831018 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.59324 -38.14690 -35.45805 -34.56090 -32.06782 -31.84959 -30.98031 -29.14827 -28.02887 -26.46860 -25.44915 -23.92022 -22.31576 -21.56085 -20.68558 -19.61867 -19.42293 -17.12434 -16.36210 -15.71731 -15.37275 -14.98710 -14.87800 -14.54528 -14.19209 -14.03057 -13.72036 -13.43483 -13.33455 -12.93411 -12.46484 -12.22959 -12.08926 -11.91785 -11.87697 -11.65805 -11.32642 -11.30670 -11.23033 -10.96153 -10.86448 -10.71998 -10.57933 -10.47336 -10.44683 -10.26432 -9.87099 -9.26182 -8.67098 -8.59774 -8.45288 -8.08149 -7.61381 -6.20604 -4.27599 1.51275 1.54952 3.25082 3.29607 3.32799 3.86411 4.31262 4.67028 4.76527 4.86060 4.96509 5.04431 5.05653 5.07507 5.26158 5.30776 5.40046 5.52993 5.64220 5.68883 5.70334 5.73540 5.78299 5.84751 5.94536 6.00995 6.12238 6.14370 6.17067 6.25040 6.27503 6.32205 6.44991 6.55435 6.62289 6.72673 6.86140 6.96399 7.09312 7.17562 7.43673 7.49156 7.69010 7.78508 7.84333 8.15296 8.73448 9.40186 9.52948 10.86641 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.024640 B = 0.003468 C = 0.003204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.088597 B = 8072.894421 C = 8737.377462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.118 4.118 3 C -0.080 4.080 4 C -0.086 4.086 5 C -0.126 4.126 6 C -0.121 4.121 7 C -0.106 4.106 8 C -0.060 4.060 9 C 0.086 3.914 10 N -0.524 5.524 11 C 0.045 3.955 12 C -0.131 4.131 13 C 0.237 3.763 14 O -0.593 6.593 15 C -0.531 4.531 16 H 0.062 0.938 17 C 0.069 3.931 18 N -0.900 5.900 19 Si 0.901 3.099 20 H -0.276 1.276 21 H -0.286 1.286 22 H -0.275 1.275 23 C 0.057 3.943 24 C -0.108 4.108 25 H 0.053 0.947 26 H 0.055 0.945 27 H 0.053 0.947 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.115 0.885 33 H 0.117 0.883 34 H 0.120 0.880 35 H 0.075 0.925 36 H 0.043 0.957 37 H 0.036 0.964 38 H 0.059 0.941 39 H 0.062 0.938 40 H 0.072 0.928 41 H 0.383 0.617 42 H 0.268 0.732 43 H 0.080 0.920 44 H 0.046 0.954 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.088 -8.063 14.416 17.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.156 4.156 3 C -0.117 4.117 4 C -0.086 4.086 5 C -0.144 4.144 6 C -0.140 4.140 7 C -0.125 4.125 8 C -0.061 4.061 9 C -0.042 4.042 10 N -0.248 5.248 11 C -0.082 4.082 12 C -0.170 4.170 13 C 0.197 3.803 14 O -0.403 6.403 15 C -0.570 4.570 16 H 0.080 0.920 17 C -0.132 4.132 18 N -0.540 5.540 19 Si 0.729 3.271 20 H -0.201 1.201 21 H -0.212 1.212 22 H -0.201 1.201 23 C -0.070 4.070 24 C -0.127 4.127 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.133 0.867 33 H 0.135 0.865 34 H 0.138 0.862 35 H 0.093 0.907 36 H 0.061 0.939 37 H 0.054 0.946 38 H 0.077 0.923 39 H 0.081 0.919 40 H 0.090 0.910 41 H 0.235 0.765 42 H 0.078 0.922 43 H 0.098 0.902 44 H 0.065 0.935 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -6.733 -8.171 15.108 18.448 hybrid contribution 0.026 0.728 -1.568 1.729 sum -6.707 -7.442 13.539 16.843 Atomic orbital electron populations 1.21794 0.95832 1.01559 1.01840 1.21503 0.95493 0.96269 1.02317 1.20616 0.91146 0.97185 1.02760 1.19803 0.95365 1.00251 0.93140 1.20914 0.94217 1.02145 0.97141 1.21064 0.94230 1.00863 0.97797 1.20999 0.99851 0.99866 0.91769 1.19869 0.93383 0.97663 0.95137 1.21228 0.98800 0.91431 0.92694 1.63719 1.11856 1.13310 1.35875 1.23056 0.90726 0.96887 0.97544 1.23168 1.00731 0.97699 0.95410 1.19702 0.89075 0.85470 0.86097 1.86069 1.74387 1.38284 1.41570 1.21578 0.96357 1.23959 1.15099 0.91996 1.25009 0.95308 0.96263 0.96650 1.69584 1.14560 1.41771 1.28108 0.86507 0.80931 0.80512 0.79185 1.20118 1.21192 1.20088 1.22862 0.95626 0.99711 0.88818 1.20971 0.93725 1.00524 0.97444 0.92823 0.92603 0.92803 0.91819 0.92028 0.91028 0.91271 0.86725 0.86478 0.86191 0.90675 0.93902 0.94599 0.92263 0.91887 0.90980 0.76492 0.92248 0.90194 0.93506 0.86457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.91 37.16 0.37 -0.83 16 2 C -0.12 -1.08 5.92 -26.73 -0.16 -1.24 16 3 C -0.08 -0.81 5.35 -27.88 -0.15 -0.96 16 4 C -0.09 -1.07 5.13 -104.62 -0.54 -1.61 16 5 C -0.13 -1.49 9.70 -39.58 -0.38 -1.87 16 6 C -0.12 -1.47 10.05 -39.58 -0.40 -1.87 16 7 C -0.11 -1.46 9.70 -39.59 -0.38 -1.85 16 8 C -0.06 -0.91 5.09 -104.62 -0.53 -1.45 16 9 C 0.09 1.47 4.72 -4.98 -0.02 1.44 16 10 N -0.52 -10.32 5.15 -232.68 -1.20 -11.52 16 11 C 0.05 0.92 5.60 -2.30 -0.01 0.91 16 12 C -0.13 -3.08 5.67 -24.59 -0.14 -3.22 16 13 C 0.24 5.92 0.85 -89.95 -0.08 5.85 16 14 O -0.59 -15.54 13.08 -35.23 -0.46 -16.00 16 15 C -0.53 -14.32 8.22 -34.44 -0.28 -14.60 16 16 H 0.06 1.65 7.53 -52.48 -0.40 1.26 16 17 C 0.07 1.84 5.28 -17.82 -0.09 1.75 16 18 N -0.90 -24.13 10.69 55.43 0.59 -23.53 16 19 Si 0.90 20.76 29.54 -169.99 -5.02 15.74 16 20 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 21 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 23 C 0.06 1.25 6.21 -2.83 -0.02 1.24 16 24 C -0.11 -1.55 8.58 -39.59 -0.34 -1.89 16 25 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.75 8.08 -51.93 -0.42 0.33 16 31 H 0.07 0.63 8.08 -51.93 -0.42 0.21 16 32 H 0.11 1.10 8.06 -52.49 -0.42 0.68 16 33 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 34 H 0.12 1.53 8.06 -52.49 -0.42 1.11 16 35 H 0.07 1.18 7.98 -51.93 -0.41 0.77 16 36 H 0.04 0.76 7.79 -51.92 -0.40 0.36 16 37 H 0.04 0.72 6.99 -51.93 -0.36 0.36 16 38 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 39 H 0.06 1.53 8.05 -51.93 -0.42 1.11 16 40 H 0.07 1.78 7.76 -51.93 -0.40 1.38 16 41 H 0.38 10.27 6.98 45.56 0.32 10.59 16 42 H 0.27 6.88 8.31 -40.82 -0.34 6.55 16 43 H 0.08 1.75 7.63 -51.93 -0.40 1.36 16 44 H 0.05 1.02 7.47 -51.93 -0.39 0.63 16 45 H 0.12 1.69 7.49 -52.49 -0.39 1.30 16 LS Contribution 358.96 15.07 5.41 5.41 Total: -1.00 -27.55 358.96 -10.88 -38.42 By element: Atomic # 1 Polarization: 18.73 SS G_CDS: -7.04 Total: 11.70 kcal Atomic # 6 Polarization: -17.05 SS G_CDS: -3.16 Total: -20.21 kcal Atomic # 7 Polarization: -34.45 SS G_CDS: -0.61 Total: -35.06 kcal Atomic # 8 Polarization: -15.54 SS G_CDS: -0.46 Total: -16.00 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -27.55 -10.88 -38.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592522578.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.538 kcal (2) G-P(sol) polarization free energy of solvation -27.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds