Wall clock time and date at job start Tue Mar 31 2020 06:25:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46886 * 2 1 4 4 C 1.50703 * 109.46912 * 180.02562 * 3 2 1 5 5 C 1.38258 * 119.99670 * 269.72692 * 4 3 2 6 6 C 1.38219 * 119.99522 * 179.80753 * 5 4 3 7 7 C 1.38250 * 120.00130 * 0.40023 * 6 5 4 8 8 C 1.38212 * 120.00000 * 359.85691 * 7 6 5 9 9 C 1.50702 * 119.99912 * 179.97438 * 8 7 6 10 10 N 1.46894 * 109.47425 * 269.97588 * 9 8 7 11 11 C 1.47850 * 110.99971 * 290.84383 * 10 9 8 12 12 C 1.54907 * 104.79378 * 213.63377 * 11 10 9 13 13 C 1.55136 * 101.65528 * 37.07112 * 12 11 10 14 14 O 1.42909 * 110.70413 * 82.72631 * 13 12 11 15 15 C 1.50700 * 110.85475 * 205.88988 * 13 12 11 16 16 H 1.08005 * 119.99372 * 113.68999 * 15 13 12 17 17 C 1.37870 * 120.00075 * 293.68661 * 15 13 12 18 18 N 1.31515 * 120.00151 * 359.97438 * 17 15 13 19 19 Si 1.86804 * 119.99785 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.46938 * 60.00347 * 19 17 15 21 21 H 1.48501 * 109.46802 * 179.97438 * 19 17 15 22 22 H 1.48489 * 109.47139 * 299.99853 * 19 17 15 23 23 C 1.47446 * 111.00268 * 170.00087 * 10 9 8 24 24 C 1.38210 * 120.00088 * 89.99887 * 4 3 2 25 25 H 1.09001 * 109.47109 * 299.99380 * 1 2 3 26 26 H 1.09002 * 109.47508 * 59.99571 * 1 2 3 27 27 H 1.09000 * 109.47437 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46652 * 240.00345 * 2 1 3 29 29 H 1.08992 * 109.47514 * 120.00434 * 2 1 3 30 30 H 1.09002 * 109.47398 * 300.00496 * 3 2 1 31 31 H 1.09001 * 109.47194 * 60.00677 * 3 2 1 32 32 H 1.07994 * 120.00494 * 0.02562 * 5 4 3 33 33 H 1.08005 * 119.99927 * 180.23109 * 6 5 4 34 34 H 1.08002 * 119.99686 * 179.82680 * 7 6 5 35 35 H 1.09003 * 109.47176 * 29.98009 * 9 8 7 36 36 H 1.09012 * 109.46916 * 149.97672 * 9 8 7 37 37 H 1.08998 * 110.37575 * 332.46353 * 11 10 9 38 38 H 1.08998 * 110.37203 * 94.80913 * 11 10 9 39 39 H 1.09002 * 110.99105 * 278.97373 * 12 11 10 40 40 H 1.09006 * 111.01918 * 155.18093 * 12 11 10 41 41 H 0.96702 * 114.00039 * 66.40297 * 14 13 12 42 42 H 0.97007 * 119.99931 * 180.02562 * 18 17 15 43 43 H 1.09001 * 109.88492 * 242.66399 * 23 10 9 44 44 H 1.08996 * 109.88428 * 3.85721 * 23 10 9 45 45 H 1.08002 * 120.00083 * 359.97438 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 6 4.2387 1.4481 1.1964 6 6 5.6209 1.4440 1.1959 7 6 6.3116 1.4429 -0.0017 8 6 5.6201 1.4427 -1.1984 9 6 6.3731 1.4420 -2.5038 10 7 6.6178 2.8267 -2.9288 11 6 5.3573 3.4897 -3.3256 12 6 5.7602 4.4526 -4.4702 13 6 6.8381 3.6213 -5.2143 14 8 6.2286 2.6982 -6.1192 15 6 7.8015 4.5220 -5.9434 16 1 8.8350 4.5707 -5.6336 17 6 7.3636 5.2837 -7.0059 18 7 6.1052 5.2240 -7.3834 19 14 8.5581 6.3996 -7.9101 20 1 9.6597 5.5850 -8.4827 21 1 7.8444 7.1052 -9.0047 22 1 9.1196 7.3952 -6.9623 23 6 7.5514 2.8724 -4.0690 24 6 4.2375 1.4427 -1.1978 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.6765 1.9564 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 3.6992 1.4520 2.1319 33 1 6.1613 1.4446 2.1310 34 1 7.3917 1.4426 -0.0021 35 1 7.3256 0.9282 -2.3736 36 1 5.7836 0.9277 -3.2630 37 1 4.6379 2.7536 -3.6844 38 1 4.9427 4.0494 -2.4872 39 1 6.1836 5.3753 -4.0733 40 1 4.9113 4.6633 -5.1208 41 1 5.7667 3.1182 -6.8577 42 1 5.7972 5.7597 -8.1312 43 1 8.4580 3.4066 -3.7847 44 1 7.7991 1.8594 -4.3862 45 1 3.6972 1.4424 -2.1330 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592522578.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:10 Heat of formation + Delta-G solvation = -57.467778 kcal Electronic energy + Delta-G solvation = -23080.941767 eV Core-core repulsion = 19868.438390 eV Total energy + Delta-G solvation = -3212.503377 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.78438 -39.72865 -36.81770 -35.83667 -34.13446 -33.18431 -31.87807 -30.70433 -29.87209 -27.33663 -27.05052 -25.61444 -23.19505 -22.58551 -22.09279 -21.30999 -20.86228 -19.15331 -17.40758 -16.94136 -16.92790 -16.68197 -16.28909 -15.88644 -15.52653 -15.46807 -14.92752 -14.56558 -14.44780 -14.24958 -13.95336 -13.77581 -13.35666 -13.21965 -13.16654 -12.92907 -12.88587 -12.76859 -12.64987 -12.35727 -12.34177 -12.17921 -12.00473 -11.99322 -11.66382 -11.57272 -11.44756 -11.16108 -10.63944 -10.12530 -9.68860 -9.47682 -9.22765 -8.23020 -6.38000 0.48522 0.54486 1.41840 1.42299 1.50349 2.38032 2.79349 3.01241 3.30886 3.81364 3.82586 3.88233 3.98462 4.18424 4.18893 4.27062 4.30589 4.36371 4.39610 4.50042 4.53962 4.57167 4.62624 4.69684 4.77345 4.81798 4.85391 4.90396 5.02600 5.09355 5.13944 5.17415 5.25061 5.31569 5.32375 5.46042 5.46507 5.51218 5.62318 5.75659 5.77927 5.79447 5.95221 6.15319 6.18814 6.21990 6.66148 7.32601 7.42143 8.82405 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.024640 B = 0.003468 C = 0.003204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.088597 B = 8072.894421 C = 8737.377462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.115 4.115 3 C -0.078 4.078 4 C -0.088 4.088 5 C -0.124 4.124 6 C -0.119 4.119 7 C -0.117 4.117 8 C -0.079 4.079 9 C 0.090 3.910 10 N -0.520 5.520 11 C 0.061 3.939 12 C -0.124 4.124 13 C 0.222 3.778 14 O -0.599 6.599 15 C -0.558 4.558 16 H 0.057 0.943 17 C 0.028 3.972 18 N -0.916 5.916 19 Si 0.962 3.038 20 H -0.274 1.274 21 H -0.281 1.281 22 H -0.272 1.272 23 C 0.064 3.936 24 C -0.124 4.124 25 H 0.063 0.937 26 H 0.051 0.949 27 H 0.060 0.940 28 H 0.050 0.950 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.085 0.915 32 H 0.143 0.857 33 H 0.145 0.855 34 H 0.127 0.873 35 H 0.086 0.914 36 H 0.029 0.971 37 H 0.034 0.966 38 H 0.071 0.929 39 H 0.050 0.950 40 H 0.053 0.947 41 H 0.377 0.623 42 H 0.270 0.730 43 H 0.079 0.921 44 H 0.046 0.954 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.292 -8.135 16.427 19.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.153 4.153 3 C -0.115 4.115 4 C -0.088 4.088 5 C -0.142 4.142 6 C -0.137 4.137 7 C -0.136 4.136 8 C -0.079 4.079 9 C -0.038 4.038 10 N -0.244 5.244 11 C -0.067 4.067 12 C -0.163 4.163 13 C 0.182 3.818 14 O -0.409 6.409 15 C -0.597 4.597 16 H 0.076 0.924 17 C -0.172 4.172 18 N -0.556 5.556 19 Si 0.788 3.212 20 H -0.199 1.199 21 H -0.206 1.206 22 H -0.197 1.197 23 C -0.064 4.064 24 C -0.143 4.143 25 H 0.082 0.918 26 H 0.070 0.930 27 H 0.079 0.921 28 H 0.069 0.931 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.104 0.896 32 H 0.161 0.839 33 H 0.163 0.837 34 H 0.145 0.855 35 H 0.104 0.896 36 H 0.047 0.953 37 H 0.052 0.948 38 H 0.090 0.910 39 H 0.069 0.931 40 H 0.072 0.928 41 H 0.228 0.772 42 H 0.079 0.921 43 H 0.098 0.902 44 H 0.064 0.936 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -6.941 -8.255 17.132 20.244 hybrid contribution 0.054 0.717 -2.150 2.267 sum -6.886 -7.537 14.982 18.130 Atomic orbital electron populations 1.21778 0.94734 1.02139 1.02174 1.21467 0.96421 0.95429 1.01949 1.20652 0.89688 0.97967 1.03225 1.20069 0.96592 0.99365 0.92787 1.21287 0.94373 1.00612 0.97890 1.21402 0.94607 0.99461 0.98233 1.21164 1.00399 1.00106 0.91901 1.19745 0.93669 0.99897 0.94632 1.21231 0.99539 0.89517 0.93474 1.63736 1.11100 1.15315 1.34273 1.22884 0.90953 0.96162 0.96653 1.22981 0.99574 0.97693 0.96067 1.19947 0.89453 0.85879 0.86568 1.86064 1.74432 1.38775 1.41635 1.21861 0.96609 1.25051 1.16152 0.92429 1.25723 0.96868 0.97406 0.97244 1.69671 1.15661 1.42036 1.28227 0.85549 0.78922 0.78726 0.78047 1.19909 1.20601 1.19677 1.22737 0.95876 0.99185 0.88603 1.20994 0.93612 1.01708 0.97981 0.91807 0.92960 0.92141 0.93141 0.91447 0.91722 0.89632 0.83919 0.83693 0.85516 0.89569 0.95272 0.94768 0.91026 0.93118 0.92823 0.77197 0.92083 0.90245 0.93571 0.87568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.91 71.98 0.71 -1.37 16 2 C -0.12 -1.92 5.92 30.59 0.18 -1.74 16 3 C -0.08 -1.45 5.35 29.85 0.16 -1.29 16 4 C -0.09 -2.05 5.13 -19.87 -0.10 -2.16 16 5 C -0.12 -2.54 9.70 22.27 0.22 -2.32 16 6 C -0.12 -2.54 10.05 22.27 0.22 -2.31 16 7 C -0.12 -3.03 9.70 22.27 0.22 -2.81 16 8 C -0.08 -2.35 5.09 -19.87 -0.10 -2.45 16 9 C 0.09 3.04 4.72 85.56 0.40 3.45 16 10 N -0.52 -20.50 5.15 -890.07 -4.59 -25.09 16 11 C 0.06 2.49 5.60 86.77 0.49 2.98 16 12 C -0.12 -5.97 5.67 31.98 0.18 -5.79 16 13 C 0.22 11.30 0.85 -10.36 -0.01 11.29 16 14 O -0.60 -32.21 13.08 -148.98 -1.95 -34.16 16 15 C -0.56 -30.52 8.22 25.60 0.21 -30.31 16 16 H 0.06 3.11 7.53 -2.91 -0.02 3.09 16 17 C 0.03 1.47 5.28 84.65 0.45 1.92 16 18 N -0.92 -49.69 10.69 21.44 0.23 -49.46 16 19 Si 0.96 42.60 29.54 68.60 2.03 44.63 16 20 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 21 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 22 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 23 C 0.06 2.83 6.21 86.65 0.54 3.37 16 24 C -0.12 -3.52 8.58 22.27 0.19 -3.33 16 25 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.06 1.29 8.08 -2.39 -0.02 1.27 16 31 H 0.09 1.32 8.08 -2.39 -0.02 1.30 16 32 H 0.14 2.12 8.06 -2.91 -0.02 2.10 16 33 H 0.15 2.24 8.06 -2.91 -0.02 2.22 16 34 H 0.13 3.01 8.06 -2.91 -0.02 2.99 16 35 H 0.09 2.68 7.98 -2.39 -0.02 2.66 16 36 H 0.03 1.06 7.79 -2.38 -0.02 1.04 16 37 H 0.03 1.40 6.99 -2.39 -0.02 1.39 16 38 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 39 H 0.05 2.51 8.05 -2.39 -0.02 2.49 16 40 H 0.05 2.73 7.76 -2.38 -0.02 2.71 16 41 H 0.38 20.85 6.98 -74.06 -0.52 20.33 16 42 H 0.27 13.94 8.31 -92.70 -0.77 13.17 16 43 H 0.08 3.51 7.63 -2.39 -0.02 3.49 16 44 H 0.05 2.02 7.47 -2.39 -0.02 2.01 16 45 H 0.11 3.15 7.49 -2.91 -0.02 3.13 16 Total: -1.00 -58.52 358.96 0.11 -58.41 By element: Atomic # 1 Polarization: 38.12 SS G_CDS: 0.44 Total: 38.55 kcal Atomic # 6 Polarization: -36.83 SS G_CDS: 3.96 Total: -32.88 kcal Atomic # 7 Polarization: -70.19 SS G_CDS: -4.36 Total: -74.55 kcal Atomic # 8 Polarization: -32.21 SS G_CDS: -1.95 Total: -34.16 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Total: -58.52 0.11 -58.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592522578.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.940 kcal (2) G-P(sol) polarization free energy of solvation -58.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds